Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002381

Physical Location & Seq

Genomic Coordinates Reverse (-)

5546696 .. 5547150

Gene Structure 455 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00283680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGGCTGAATTTGAGCACCAGGCATTGCTAGAGGAGTGGTTCACTTCTTCCACATGTAGTGATAAATGGCAAGTCCAGGATAGAGATAAGCTGATAAGCAATGTGAAGATGATTCAGGACTATCTTCACTCATTTGATTCAAAGGGACTGACAGTTCTCAACCTATCAGCAGCCACATTCGCTCAAACACTAGATTGGCTGCACGGATATATTCTTGAGGTACTTCTTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_18

Protein Analysis

77

Amino Acids

8.94

Weight (kDa)

4.66

Isoelectric Point (pI)

25.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61450
fragaria_vesca	FvH4_2g12100 FvH4_3g27272 FvH4_5g28373 FvH4_7g05310 FvH4_7g05310 FvH4_7g05310 FvH4_7g05310 FvH4_7g05310 FvH4_7g27310 FvH4_c2g00051
malus_domestica	MD01G1182200.v1.1 MD07G1252500.v1.1 MD07G1252600.v1.1
prunus_persica	Prupe.2G276000_v2.0.a1 Prupe.2G276100_v2.0.a1 Prupe.2G276100_v2.0.a1
pyrus_communis	pycom01g19200 pycom07g22490 pycom07g22500 pycom07g22520
rosa_chinensis	RchiOBHm_Chr1g0331961 RchiOBHm_Chr1g0374151
rosa_laevigata	RLG00000026758 RLG00000029700
rosa_multiflora	Rmu_sc0008128.1_g000007
rosa_roxburghii	Rroxscaffold_4G00283680 Rroxscaffold_4G00318580
rosa_rugosa	Rorug01G0097200 Rorug01G0097300 Rorug01G0097400 Rorug01G0381100
rosa_samantha	Rh1AG121300 Rh1AG392100 Rh1BG092900 Rh1BG356100 Rh1CG116100 Rh1CG369000 Rh1DG127200 Rh1DG386600
rosa_wichuraiana	Rw1G009900 Rw1G034360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	8
AfaI	GTAC	1 cut(s)	222
AflIII	ACRYGT	1 cut(s)	53
AgsI	TTSAA	1 cut(s)	141
AjnI	CCWGG	2 cut(s)	18, 75
AloI	GAACNNNNNNTCC	2 cut(s)	138, 170
AluBI	AGCT	1 cut(s)	91
AluI	AGCT	1 cut(s)	91
Alw21I	GWGCWC	1 cut(s)	18
ApeKI	GCWGC	2 cut(s)	170, 199
ApoI	RAATTY	1 cut(s)	8
Bbv12I	GWGCWC	1 cut(s)	18
BbvI	GCAGC	2 cut(s)	182, 186
BciT130I	CCWGG	2 cut(s)	20, 77
BfaI	CTAG	2 cut(s)	29, 191
BisI	GCNGC	2 cut(s)	171, 200
BlsI	GCNGC	2 cut(s)	172, 201
Bme1390I	CCNGG	2 cut(s)	20, 77
BmrFI	CCNGG	2 cut(s)	20, 77
Bse3DI	GCAATG	2 cut(s)	23, 106
BseBI	CCWGG	2 cut(s)	20, 77
BseMI	GCAATG	2 cut(s)	23, 106
BseRI	GAGGAG	1 cut(s)	47
BseXI	GCAGC	2 cut(s)	182, 186
BsgI	GTGCAG	1 cut(s)	185
BsiHKAI	GWGCWC	1 cut(s)	18
BslFI	GGGAC	1 cut(s)	159
BsmFI	GGGAC	1 cut(s)	159
Bsp1286I	GDGCHC	1 cut(s)	18
BsrDI	GCAATG	2 cut(s)	23, 106
Bst2UI	CCWGG	2 cut(s)	20, 77
Bst4CI	ACNGT	1 cut(s)	154
BstMWI	GCNNNNNNNGC	1 cut(s)	179
BstNI	CCWGG	2 cut(s)	20, 77
BstNSI	RCATGY	1 cut(s)	57
BstSCI	CCNGG	2 cut(s)	18, 75
BstV1I	GCAGC	2 cut(s)	182, 186
Csp6I	GTAC	1 cut(s)	221
CviAII	CATG	1 cut(s)	54
CviJI	RGCY	4 cut(s)	5, 91, 173, 199
CviKI_1	RGCY	4 cut(s)	5, 91, 173, 199
CviQI	GTAC	1 cut(s)	221
EcoRII	CCWGG	2 cut(s)	18, 75
FaeI	CATG	1 cut(s)	57
FaiI	YATR	2 cut(s)	55, 210
FaqI	GGGAC	1 cut(s)	159
FatI	CATG	1 cut(s)	53
Fnu4HI	GCNGC	2 cut(s)	171, 200
Fsp4HI	GCNGC	2 cut(s)	171, 200
FspBI	CTAG	2 cut(s)	29, 191
GluI	GCNGC	2 cut(s)	171, 200
Hin1II	CATG	1 cut(s)	57
HinfI	GANTC	2 cut(s)	112, 137
Hpy166II	GTNNAC	1 cut(s)	42
Hpy188III	TCNNGA	2 cut(s)	116, 215
Hpy8I	GTNNAC	1 cut(s)	42
HpyCH4III	ACNGT	1 cut(s)	154
HpyCH4V	TGCA	1 cut(s)	202
HpyF10VI	GCNNNNNNNGC	1 cut(s)	179
Hsp92II	CATG	1 cut(s)	57
LpnPI	CCDG	5 cut(s)	5, 32, 62, 89, 101
Lsp1109I	GCAGC	2 cut(s)	182, 186
MaeI	CTAG	2 cut(s)	29, 191
MboII	GAAGA	3 cut(s)	39, 116, 118
MhlI	GDGCHC	1 cut(s)	18
MluCI	AATT	2 cut(s)	8, 229
MnlI	CCTC	2 cut(s)	25, 211
MseI	TTAA	2 cut(s)	228, 232
MspR9I	CCNGG	2 cut(s)	20, 77
MvaI	CCWGG	2 cut(s)	20, 77
MwoI	GCNNNNNNNGC	1 cut(s)	179
NlaIII	CATG	1 cut(s)	57
NspI	RCATGY	1 cut(s)	57
PacI	TTAATTAA	1 cut(s)	232
PciI	ACATGT	1 cut(s)	53
PfeI	GAWTC	2 cut(s)	112, 137
PfoI	TCCNGGA	1 cut(s)	75
PkrI	GCNGC	2 cut(s)	172, 201
PscI	ACATGT	1 cut(s)	53
Psp6I	CCWGG	2 cut(s)	18, 75
PspGI	CCWGG	2 cut(s)	18, 75
RsaI	GTAC	1 cut(s)	222
RsaNI	GTAC	1 cut(s)	221
SaqAI	TTAA	2 cut(s)	228, 232
SatI	GCNGC	2 cut(s)	171, 200
ScrFI	CCNGG	2 cut(s)	20, 77
SduI	GDGCHC	1 cut(s)	18
SetI	ASST	3 cut(s)	93, 165, 222
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
Sse9I	AATT	2 cut(s)	8, 229
SspMI	CTAG	2 cut(s)	29, 191
StyD4I	CCNGG	2 cut(s)	18, 75
TaaI	ACNGT	1 cut(s)	154
TasI	AATT	2 cut(s)	8, 229
TfiI	GAWTC	2 cut(s)	112, 137
Tru1I	TTAA	2 cut(s)	228, 232
Tru9I	TTAA	2 cut(s)	228, 232
TseI	GCWGC	2 cut(s)	170, 199
TspGWI	ACGGA	1 cut(s)	219
XapI	RAATTY	1 cut(s)	8
XceI	RCATGY	1 cut(s)	57
XspI	CTAG	2 cut(s)	29, 191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.