Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008128.1

Orthogroup ID

OG0002381

Physical Location & Seq

Genomic Coordinates Forward (+)

44569 .. 46738

Gene Structure 2170 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008128.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

atggatgatgaaaataaaacacgagctgatgtgcaagagaaaactccggaggcaaaccatcttgcagcaaatgattcaaaaacacagatgggaaatgattctctaatatataccgagcatgtcaactctgaagaagggacactaaataacaaagtcaacaatgtctcagattacctggaagctattaaccttgctggaagtttgtctgataaaaaaggtgaaaatcttagtggtgaagagacaaacaaaacttctcttgttaagaaagagaagtccggtccggaaccaataattatacctatagttctgaagatggctgaatttgatcataaggctttgctagaggaggagatctcaacccgaacatttagtgataaatgtctagtccaggataaagataaactaataagcaacttaaagatcatccaggactatctttgctcattcaattctcagggattgacagtagtcaatatatcagcaacaacattcccacaaacattggattggctgcatggatatcttcttgagtgtattgagcatggtatttcatctgtgtccaacgaaaatagtaggcggcctgtggaaaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_18

Protein Analysis

197

Amino Acids

21.95

Weight (kDa)

4.86

Isoelectric Point (pI)

42.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61450
fragaria_vesca	FvH4_2g12100 FvH4_3g27272 FvH4_5g28373 FvH4_7g05310 FvH4_7g05310 FvH4_7g05310 FvH4_7g05310 FvH4_7g05310 FvH4_7g27310 FvH4_c2g00051
malus_domestica	MD01G1182200.v1.1 MD07G1252500.v1.1 MD07G1252600.v1.1
prunus_persica	Prupe.2G276000_v2.0.a1 Prupe.2G276100_v2.0.a1 Prupe.2G276100_v2.0.a1
pyrus_communis	pycom01g19200 pycom07g22490 pycom07g22500 pycom07g22520
rosa_chinensis	RchiOBHm_Chr1g0331961 RchiOBHm_Chr1g0374151
rosa_laevigata	RLG00000026758 RLG00000029700
rosa_multiflora	Rmu_sc0008128.1_g000007
rosa_roxburghii	Rroxscaffold_4G00283680 Rroxscaffold_4G00318580
rosa_rugosa	Rorug01G0097200 Rorug01G0097300 Rorug01G0097400 Rorug01G0381100
rosa_samantha	Rh1AG121300 Rh1AG392100 Rh1BG092900 Rh1BG356100 Rh1CG116100 Rh1CG369000 Rh1DG127200 Rh1DG386600
rosa_wichuraiana	Rw1G009900 Rw1G034360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	2 cut(s)	46, 280
AciI	CCGC	1 cut(s)	577
AcsI	RAATTY	1 cut(s)	320
AcuI	CTGAAG	2 cut(s)	150, 329
AgsI	TTSAA	2 cut(s)	78, 448
AjnI	CCWGG	3 cut(s)	174, 387, 426
AluBI	AGCT	2 cut(s)	26, 182
AluI	AGCT	2 cut(s)	26, 182
Alw26I	GTCTC	2 cut(s)	169, 233
Aor13HI	TCCGGA	2 cut(s)	46, 280
AoxI	GGCC	1 cut(s)	578
ApeKI	GCWGC	2 cut(s)	65, 511
ApoI	RAATTY	1 cut(s)	320
Asp700I	GAANNNNTTC	1 cut(s)	97
AspS9I	GGNCC	1 cut(s)	278
AsuHPI	GGTGA	2 cut(s)	230, 245
AvaII	GGWCC	1 cut(s)	278
BauI	CACGAG	1 cut(s)	21
BbvI	GCAGC	2 cut(s)	77, 498
BccI	CCATC	3 cut(s)	66, 82, 307
BciT130I	CCWGG	3 cut(s)	176, 389, 428
BclI	TGATCA	1 cut(s)	325
BcoDI	GTCTC	2 cut(s)	169, 233
BfaI	CTAG	2 cut(s)	341, 383
BfmI	CTRYAG	1 cut(s)	300
BglII	AGATCT	1 cut(s)	351
BisI	GCNGC	3 cut(s)	66, 512, 578
BlsI	GCNGC	3 cut(s)	67, 513, 579
Bme1390I	CCNGG	3 cut(s)	176, 389, 428
Bme18I	GGWCC	1 cut(s)	278
BmgT120I	GGNCC	1 cut(s)	278
BmiI	GGNNCC	1 cut(s)	285
BmrFI	CCNGG	3 cut(s)	176, 389, 428
BoxI	GACNNNNGTC	1 cut(s)	467
BplI	GAGNNNNNCTC	2 cut(s)	338, 370
BpuEI	CTTGAG	1 cut(s)	548
BsaWI	WCCGGW	3 cut(s)	46, 275, 280
BseAI	TCCGGA	2 cut(s)	46, 280
BseBI	CCWGG	3 cut(s)	176, 389, 428
BseGI	GGATG	2 cut(s)	10, 423
BseMII	CTCAG	2 cut(s)	180, 467
BseRI	GAGGAG	2 cut(s)	359, 362
BseXI	GCAGC	2 cut(s)	77, 498
BshFI	GGCC	1 cut(s)	580
BsiSI	CCGG	3 cut(s)	47, 276, 281
BslFI	GGGAC	1 cut(s)	151
BsmAI	GTCTC	2 cut(s)	169, 233
BsmFI	GGGAC	1 cut(s)	151
BsnI	GGCC	1 cut(s)	580
Bsp13I	TCCGGA	2 cut(s)	46, 280
Bsp143I	GATC	3 cut(s)	325, 351, 420
BspACI	CCGC	1 cut(s)	577
BspANI	GGCC	1 cut(s)	580
BspCNI	CTCAG	2 cut(s)	179, 466
BspEI	TCCGGA	2 cut(s)	46, 280
BspLI	GGNNCC	1 cut(s)	285
BssMI	GATC	3 cut(s)	325, 351, 420
BssSI	CACGAG	1 cut(s)	21
Bst2BI	CACGAG	1 cut(s)	21
Bst2UI	CCWGG	3 cut(s)	176, 389, 428
Bst4CI	ACNGT	1 cut(s)	466
Bst6I	CTCTTC	1 cut(s)	231
BstDEI	CTNAG	3 cut(s)	166, 227, 453
BstF5I	GGATG	2 cut(s)	10, 423
BstKTI	GATC	3 cut(s)	328, 354, 423
BstMAI	GTCTC	2 cut(s)	169, 233
BstMBI	GATC	3 cut(s)	325, 351, 420
BstNI	CCWGG	3 cut(s)	176, 389, 428
BstNSI	RCATGY	1 cut(s)	122
BstPAI	GACNNNNGTC	1 cut(s)	467
BstSCI	CCNGG	3 cut(s)	174, 387, 426
BstSFI	CTRYAG	1 cut(s)	300
BstV1I	GCAGC	2 cut(s)	77, 498
BstX2I	RGATCY	1 cut(s)	351
BstYI	RGATCY	1 cut(s)	351
BsuRI	GGCC	1 cut(s)	580
BtsCI	GGATG	2 cut(s)	10, 423
Cfr13I	GGNCC	1 cut(s)	278
CpoI	CGGWCCG	1 cut(s)	278
CspCI	CAANNNNNGTGG	2 cut(s)	483, 518
CspI	CGGWCCG	1 cut(s)	278
CviAII	CATG	3 cut(s)	119, 515, 542
CviJI	RGCY	6 cut(s)	26, 182, 317, 335, 511, 580
CviKI_1	RGCY	6 cut(s)	26, 182, 317, 335, 511, 580
DdeI	CTNAG	3 cut(s)	166, 227, 453
DpnI	GATC	3 cut(s)	327, 353, 422
DpnII	GATC	3 cut(s)	325, 351, 420
Eam1104I	CTCTTC	1 cut(s)	231
EarI	CTCTTC	1 cut(s)	231
Eco32I	GATATC	1 cut(s)	521
Eco47I	GGWCC	1 cut(s)	278
Eco57I	CTGAAG	2 cut(s)	150, 329
EcoRII	CCWGG	3 cut(s)	174, 387, 426
EcoRV	GATATC	1 cut(s)	521
FaeI	CATG	3 cut(s)	122, 518, 545
FaiI	YATR	9 cut(s)	109, 111, 120, 296, 302, 330, 476, 516, 543
FaqI	GGGAC	1 cut(s)	151
FatI	CATG	3 cut(s)	118, 514, 541
FbaI	TGATCA	1 cut(s)	325
Fnu4HI	GCNGC	3 cut(s)	66, 512, 578
FokI	GGATG	2 cut(s)	17, 410
Fsp4HI	GCNGC	3 cut(s)	66, 512, 578
FspBI	CTAG	2 cut(s)	341, 383
GluI	GCNGC	3 cut(s)	66, 512, 578
HaeIII	GGCC	1 cut(s)	580
HapII	CCGG	3 cut(s)	47, 276, 281
Hin1II	CATG	3 cut(s)	122, 518, 545
HincII	GTYRAC	2 cut(s)	124, 157
HindII	GTYRAC	2 cut(s)	124, 157
HinfI	GANTC	2 cut(s)	74, 98
HpaII	CCGG	3 cut(s)	47, 276, 281
HphI	GGTGA	2 cut(s)	230, 245
Hpy166II	GTNNAC	2 cut(s)	124, 157
Hpy188I	TCNGA	4 cut(s)	130, 169, 208, 309
Hpy188III	TCNNGA	3 cut(s)	47, 281, 527
Hpy8I	GTNNAC	2 cut(s)	124, 157
HpyAV	CCTTC	1 cut(s)	128
HpyCH4III	ACNGT	1 cut(s)	466
HpyCH4V	TGCA	3 cut(s)	34, 65, 514
HpyF3I	CTNAG	3 cut(s)	166, 227, 453
Hsp92II	CATG	3 cut(s)	122, 518, 545
Kpn2I	TCCGGA	2 cut(s)	46, 280
Ksp22I	TGATCA	1 cut(s)	325
Kzo9I	GATC	3 cut(s)	325, 351, 420
Lsp1109I	GCAGC	2 cut(s)	77, 498
MaeI	CTAG	2 cut(s)	341, 383
MalI	GATC	3 cut(s)	327, 353, 422
MboI	GATC	3 cut(s)	325, 351, 420
MboII	GAAGA	4 cut(s)	143, 248, 322, 515
MflI	RGATCY	1 cut(s)	351
MluCI	AATT	3 cut(s)	291, 320, 448
MmeI	TCCRAC	1 cut(s)	585
MnlI	CCTC	3 cut(s)	43, 337, 340
MroI	TCCGGA	2 cut(s)	46, 280
MroXI	GAANNNNTTC	1 cut(s)	97
MseI	TTAA	3 cut(s)	186, 261, 416
MspI	CCGG	3 cut(s)	47, 276, 281
MspR9I	CCNGG	3 cut(s)	176, 389, 428
MvaI	CCWGG	3 cut(s)	176, 389, 428
NdeII	GATC	3 cut(s)	325, 351, 420
NlaIII	CATG	3 cut(s)	122, 518, 545
NlaIV	GGNNCC	1 cut(s)	285
NspI	RCATGY	1 cut(s)	122
PdmI	GAANNNNTTC	1 cut(s)	97
PfeI	GAWTC	2 cut(s)	74, 98
PfoI	TCCNGGA	2 cut(s)	387, 426
PkrI	GCNGC	3 cut(s)	67, 513, 579
PshAI	GACNNNNGTC	1 cut(s)	467
Psp6I	CCWGG	3 cut(s)	174, 387, 426
PspGI	CCWGG	3 cut(s)	174, 387, 426
PspN4I	GGNNCC	1 cut(s)	285
PspPI	GGNCC	1 cut(s)	278
PsuI	RGATCY	1 cut(s)	351
Rsr2I	CGGWCCG	1 cut(s)	278
RsrII	CGGWCCG	1 cut(s)	278
SaqAI	TTAA	3 cut(s)	186, 261, 416
SatI	GCNGC	3 cut(s)	66, 512, 578
Sau3AI	GATC	3 cut(s)	325, 351, 420
Sau96I	GGNCC	1 cut(s)	278
ScrFI	CCNGG	3 cut(s)	176, 389, 428
SetI	ASST	6 cut(s)	28, 177, 184, 192, 220, 301
SfcI	CTRYAG	1 cut(s)	300
SinI	GGWCC	1 cut(s)	278
SmlI	CTYRAG	1 cut(s)	527
SmoI	CTYRAG	1 cut(s)	527
Sse9I	AATT	3 cut(s)	291, 320, 448
SsiI	CCGC	1 cut(s)	577
SspMI	CTAG	2 cut(s)	341, 383
StyD4I	CCNGG	3 cut(s)	174, 387, 426
TaaI	ACNGT	1 cut(s)	466
TasI	AATT	3 cut(s)	291, 320, 448
TauI	GCSGC	1 cut(s)	580
TfiI	GAWTC	2 cut(s)	74, 98
Tru1I	TTAA	3 cut(s)	186, 261, 416
Tru9I	TTAA	3 cut(s)	186, 261, 416
TseI	GCWGC	2 cut(s)	65, 511
TspDTI	ATGAA	2 cut(s)	24, 540
VpaK11BI	GGWCC	1 cut(s)	278
XapI	RAATTY	1 cut(s)	320
XceI	RCATGY	1 cut(s)	122
XmnI	GAANNNNTTC	1 cut(s)	97
XspI	CTAG	2 cut(s)	341, 383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.