Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0002381

Physical Location & Seq

Genomic Coordinates Forward (+)

23821744 .. 23824490

Gene Structure 2747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g22490.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGGGATTCCACCCAGAGACACAGACGATGAACAACAAGGGCAAAGCAGTCGCCGTCTCAAGCCCCAACATCAACGACATCGACGACGACAACGTTAACATCAACGTAGACGACTTGGATTTGGACGACGACAACAACAACAGAAGTAGTGGCGTCTCTTCGACTTCCATCAGATTCTCGTCCCGCAACACTTCCTCCAAATACGACTTTGTCAAGGTGAAGGTCTGGCTGGGTGATAATGCAGATCACTACTATGTTCTTTCCAGATTTTTGCTCAGTCGAATGTTGACTGTCACTAAGATCCCGAATTATGTAGCGATTAAAATCGCGCTGGAGCTCAAGAAGCTGCTGATTGACAACAGCCTGCTAGATGTTTCGCAGTCCGATTTGGAAGTGAATTTGTTTAAGCTTATGGAACGAAGGGGTTATGGGGAAGAGTACATAAATCGGTACAAGATGATGACCAGATTTCACCATCAACGAGTACCATTAGTTATTCTTGTATGTGGAACTGCCTGTGTTGGAAAGTCGACCATTGCTACCCAACTCGCACAAAGACTAAATTTGCCTAATGTCTTGCAGACAGATATGGTATATGAATTGTTGCGCACGTCAACAGATGCACCGTTGACATCTACTCCTGTATGGGAACGAGACTTCAGCTCCTCTGAGGAGTTAATTACTGAATTTTGTAGGGAATGCAGGATTGTCCGTAAAGGATTGGCTGGTGATTTGAAGAAAGCTATGAAAGATGGAAAGCCAATAATAATAGAGGGAATACATTTGGATCCAAGCATTTATTTAATGGAAGATGATAATAAAACACAAGCACAAGAGAAAACTCAGGAGGCAGACCCCGTTGCAGTAGATGGTTCCAAAACACAGATGGAAAACAATTCTCCAAGTATAAGCGGAAGTTCTTCTGAAGTTTGCAACAGTGCTGCACATGTCAGCTGCGAAGAAGGGACACCAACTAACAAGGTGGACGAAGTCTCGGATCGATCTGGAAGCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_18

Protein Analysis

339

Amino Acids

37.75

Weight (kDa)

5.13

Isoelectric Point (pI)

39.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61450
fragaria_vesca	FvH4_2g12100 FvH4_3g27272 FvH4_5g28373 FvH4_7g05310 FvH4_7g05310 FvH4_7g05310 FvH4_7g05310 FvH4_7g05310 FvH4_7g27310 FvH4_c2g00051
malus_domestica	MD01G1182200.v1.1 MD07G1252500.v1.1 MD07G1252600.v1.1
prunus_persica	Prupe.2G276000_v2.0.a1 Prupe.2G276100_v2.0.a1 Prupe.2G276100_v2.0.a1
pyrus_communis	pycom01g19200 pycom07g22490 pycom07g22500 pycom07g22520
rosa_chinensis	RchiOBHm_Chr1g0331961 RchiOBHm_Chr1g0374151
rosa_laevigata	RLG00000026758 RLG00000029700
rosa_multiflora	Rmu_sc0008128.1_g000007
rosa_roxburghii	Rroxscaffold_4G00283680 Rroxscaffold_4G00318580
rosa_rugosa	Rorug01G0097200 Rorug01G0097300 Rorug01G0097400 Rorug01G0381100
rosa_samantha	Rh1AG121300 Rh1AG392100 Rh1BG092900 Rh1BG356100 Rh1CG116100 Rh1CG369000 Rh1DG127200 Rh1DG386600
rosa_wichuraiana	Rw1G009900 Rw1G034360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	608
AccI	GTMKAC	2 cut(s)	108, 530
AccII	CGCG	1 cut(s)	329
AciI	CCGC	2 cut(s)	184, 912
AclI	AACGTT	1 cut(s)	93
AclWI	GGATC	4 cut(s)	295, 782, 795, 1005
AcsI	RAATTY	3 cut(s)	397, 562, 686
AcuI	CTGAAG	2 cut(s)	643, 945
AcyI	GRCGYC	1 cut(s)	153
AfaI	GTAC	3 cut(s)	440, 452, 486
AflIII	ACRYGT	1 cut(s)	946
AgsI	TTSAA	1 cut(s)	736
AjiI	CACGTC	1 cut(s)	612
AluBI	AGCT	7 cut(s)	337, 346, 409, 663, 743, 954, 1011
AluI	AGCT	7 cut(s)	337, 346, 409, 663, 743, 954, 1011
Alw21I	GWGCWC	1 cut(s)	339
Alw26I	GTCTC	5 cut(s)	11, 61, 160, 648, 997
AlwI	GGATC	4 cut(s)	295, 782, 795, 1005
ApeKI	GCWGC	3 cut(s)	346, 941, 954
ApoI	RAATTY	3 cut(s)	397, 562, 686
Asp700I	GAANNNNTTC	1 cut(s)	919
AspLEI	GCGC	2 cut(s)	331, 609
AsuHPI	GGTGA	4 cut(s)	229, 245, 464, 740
BamHI	GGATCC	1 cut(s)	787
BanII	GRGCYC	1 cut(s)	339
Bbv12I	GWGCWC	1 cut(s)	339
BbvI	GCAGC	3 cut(s)	333, 928, 941
BccI	CCATC	5 cut(s)	176, 483, 746, 863, 880
BceAI	ACGGC	1 cut(s)	38
BcgI	CGANNNNNNTGC	2 cut(s)	31, 65
BcoDI	GTCTC	5 cut(s)	11, 61, 160, 648, 997
BfaI	CTAG	1 cut(s)	368
BisI	GCNGC	3 cut(s)	347, 942, 955
BlsI	GCNGC	3 cut(s)	348, 943, 956
BmgBI	CACGTC	1 cut(s)	612
BmiI	GGNNCC	2 cut(s)	789, 874
BmsI	GCATC	1 cut(s)	610
BpmI	CTGGAG	1 cut(s)	353
BpuEI	CTTGAG	2 cut(s)	43, 323
Bsa29I	ATCGAT	1 cut(s)	1000
BsaBI	GATNNNNATC	1 cut(s)	323
BsaHI	GRCGYC	1 cut(s)	153
BsaXI	ACNNNNNCTCC	6 cut(s)	179, 209, 622, 647, 652, 677
Bse3DI	GCAATG	1 cut(s)	534
Bse8I	GATNNNNATC	1 cut(s)	323
BseCI	ATCGAT	1 cut(s)	1000
BseJI	GATNNNNATC	1 cut(s)	323
BseMI	GCAATG	1 cut(s)	534
BseMII	CTCAG	3 cut(s)	289, 660, 857
BseRI	GAGGAG	2 cut(s)	655, 686
BseXI	GCAGC	3 cut(s)	333, 928, 941
BseYI	CCCAGC	1 cut(s)	229
BsgI	GTGCAG	1 cut(s)	927
Bsh1236I	CGCG	1 cut(s)	329
BshVI	ATCGAT	1 cut(s)	1000
BsiHKAI	GWGCWC	1 cut(s)	339
BslFI	GGGAC	2 cut(s)	166, 979
BsmAI	GTCTC	5 cut(s)	11, 61, 160, 648, 997
BsmBI	CGTCTC	2 cut(s)	61, 160
BsmFI	GGGAC	2 cut(s)	166, 979
BsmI	GAATGC	1 cut(s)	704
Bsp1286I	GDGCHC	1 cut(s)	339
Bsp143I	GATC	5 cut(s)	244, 300, 787, 997, 1001
BspACI	CCGC	2 cut(s)	184, 912
BspCNI	CTCAG	3 cut(s)	288, 661, 856
BspDI	ATCGAT	1 cut(s)	1000
BspFNI	CGCG	1 cut(s)	329
BspLI	GGNNCC	2 cut(s)	789, 874
BspPI	GGATC	4 cut(s)	295, 782, 795, 1005
BsrDI	GCAATG	1 cut(s)	534
BssMI	GATC	5 cut(s)	244, 300, 787, 997, 1001
BssNI	GRCGYC	1 cut(s)	153
Bst4CI	ACNGT	3 cut(s)	292, 627, 938
Bst6I	CTCTTC	2 cut(s)	163, 429
BstACI	GRCGYC	1 cut(s)	153
BstC8I	GCNNGC	1 cut(s)	365
BstDEI	CTNAG	4 cut(s)	275, 297, 669, 843
BstFNI	CGCG	1 cut(s)	329
BstHHI	GCGC	2 cut(s)	331, 609
BstKTI	GATC	5 cut(s)	247, 303, 790, 1000, 1004
BstMAI	GTCTC	5 cut(s)	11, 61, 160, 648, 997
BstMBI	GATC	5 cut(s)	244, 300, 787, 997, 1001
BstMWI	GCNNNNNNNGC	1 cut(s)	343
BstNSI	RCATGY	1 cut(s)	950
BstUI	CGCG	1 cut(s)	329
BstV1I	GCAGC	3 cut(s)	333, 928, 941
BstX2I	RGATCY	2 cut(s)	300, 787
BstYI	RGATCY	2 cut(s)	300, 787
Bsu15I	ATCGAT	1 cut(s)	1000
BsuTUI	ATCGAT	1 cut(s)	1000
BtrI	CACGTC	1 cut(s)	612
BtsIMutI	CAGTG	1 cut(s)	943
Cac8I	GCNNGC	1 cut(s)	365
CfoI	GCGC	2 cut(s)	331, 609
ClaI	ATCGAT	1 cut(s)	1000
CseI	GACGC	1 cut(s)	142
Csp6I	GTAC	3 cut(s)	439, 451, 485
CviAII	CATG	1 cut(s)	947
CviQI	GTAC	3 cut(s)	439, 451, 485
DdeI	CTNAG	4 cut(s)	275, 297, 669, 843
DpnI	GATC	5 cut(s)	246, 302, 789, 999, 1003
DpnII	GATC	5 cut(s)	244, 300, 787, 997, 1001
Eam1104I	CTCTTC	2 cut(s)	163, 429
EarI	CTCTTC	2 cut(s)	163, 429
Ecl136II	GAGCTC	1 cut(s)	337
Eco24I	GRGCYC	1 cut(s)	339
Eco53kI	GAGCTC	1 cut(s)	337
Eco57I	CTGAAG	2 cut(s)	643, 945
EcoICRI	GAGCTC	1 cut(s)	337
EcoT38I	GRGCYC	1 cut(s)	339
Esp3I	CGTCTC	2 cut(s)	61, 160
FaeI	CATG	1 cut(s)	950
FaqI	GGGAC	2 cut(s)	166, 979
FatI	CATG	1 cut(s)	946
FauI	CCCGC	1 cut(s)	191
FblI	GTMKAC	2 cut(s)	108, 530
Fnu4HI	GCNGC	3 cut(s)	347, 942, 955
FriOI	GRGCYC	1 cut(s)	339
Fsp4HI	GCNGC	3 cut(s)	347, 942, 955
FspBI	CTAG	1 cut(s)	368
FspI	TGCGCA	1 cut(s)	608
GlaI	GCGC	2 cut(s)	330, 608
GluI	GCNGC	3 cut(s)	347, 942, 955
GsaI	CCCAGC	1 cut(s)	233
GsuI	CTGGAG	1 cut(s)	353
HgaI	GACGC	1 cut(s)	142
HhaI	GCGC	2 cut(s)	331, 609
Hin1I	GRCGYC	1 cut(s)	153
Hin1II	CATG	1 cut(s)	950
Hin6I	GCGC	2 cut(s)	329, 607
HinP1I	GCGC	2 cut(s)	329, 607
HincII	GTYRAC	5 cut(s)	97, 288, 531, 615, 630
HindII	GTYRAC	5 cut(s)	97, 288, 531, 615, 630
HindIII	AAGCTT	1 cut(s)	407
HinfI	GANTC	2 cut(s)	6, 174
HpaI	GTTAAC	1 cut(s)	97
HphI	GGTGA	4 cut(s)	229, 245, 464, 740
Hpy166II	GTNNAC	7 cut(s)	97, 109, 288, 531, 615, 630, 985
Hpy188I	TCNGA	5 cut(s)	173, 385, 670, 925, 997
Hpy188III	TCNNGA	5 cut(s)	264, 304, 340, 845, 1005
Hpy8I	GTNNAC	7 cut(s)	97, 109, 288, 531, 615, 630, 985
Hpy99I	CGWCG	3 cut(s)	86, 89, 131
HpyAV	CCTTC	3 cut(s)	214, 414, 956
HpyCH4III	ACNGT	3 cut(s)	292, 627, 938
HpyCH4IV	ACGT	3 cut(s)	93, 105, 611
HpyCH4V	TGCA	7 cut(s)	242, 580, 623, 702, 863, 933, 944
HpyF10VI	GCNNNNNNNGC	1 cut(s)	343
HpyF3I	CTNAG	4 cut(s)	275, 297, 669, 843
HpySE526I	ACGT	3 cut(s)	93, 105, 611
Hsp92I	GRCGYC	1 cut(s)	153
Hsp92II	CATG	1 cut(s)	950
HspAI	GCGC	2 cut(s)	329, 607
KspAI	GTTAAC	1 cut(s)	97
Kzo9I	GATC	5 cut(s)	244, 300, 787, 997, 1001
LmnI	GCTCC	2 cut(s)	334, 668
Lsp1109I	GCAGC	3 cut(s)	333, 928, 941
LweI	GCATC	1 cut(s)	610
MaeI	CTAG	1 cut(s)	368
MaeII	ACGT	3 cut(s)	93, 105, 611
MaeIII	GTNAC	1 cut(s)	292
MalI	GATC	5 cut(s)	246, 302, 789, 999, 1003
MboI	GATC	5 cut(s)	244, 300, 787, 997, 1001
MboII	GAAGA	6 cut(s)	150, 446, 748, 821, 912, 971
MflI	RGATCY	2 cut(s)	300, 787
MhlI	GDGCHC	1 cut(s)	339
MluCI	AATT	7 cut(s)	307, 397, 562, 599, 678, 686, 895
MmeI	TCCRAC	1 cut(s)	502
MnlI	CCTC	5 cut(s)	205, 664, 676, 766, 841
MroXI	GAANNNNTTC	1 cut(s)	919
MseI	TTAA	5 cut(s)	96, 321, 405, 677, 803
MslI	CAYNNNNRTG	1 cut(s)	252
MspA1I	CMGCKG	1 cut(s)	954
Mva1269I	GAATGC	1 cut(s)	704
MvnI	CGCG	1 cut(s)	329
MwoI	GCNNNNNNNGC	1 cut(s)	343
NdeII	GATC	5 cut(s)	244, 300, 787, 997, 1001
NlaIII	CATG	1 cut(s)	950
NlaIV	GGNNCC	2 cut(s)	789, 874
NmuCI	GTSAC	1 cut(s)	292
NsbI	TGCGCA	1 cut(s)	608
NspI	RCATGY	1 cut(s)	950
PciI	ACATGT	1 cut(s)	946
PcsI	WCGNNNNNNNCGW	2 cut(s)	81, 90
PctI	GAATGC	1 cut(s)	704
PdmI	GAANNNNTTC	1 cut(s)	919
PfeI	GAWTC	2 cut(s)	6, 174
PflFI	GACNNNGTC	2 cut(s)	209, 989
PkrI	GCNGC	3 cut(s)	348, 943, 956
PscI	ACATGT	1 cut(s)	946
Psp124BI	GAGCTC	1 cut(s)	339
Psp1406I	AACGTT	1 cut(s)	93
PspFI	CCCAGC	1 cut(s)	229
PspN4I	GGNNCC	2 cut(s)	789, 874
PsuI	RGATCY	2 cut(s)	300, 787
PsyI	GACNNNGTC	2 cut(s)	209, 989
PvuII	CAGCTG	1 cut(s)	954
RsaI	GTAC	3 cut(s)	440, 452, 486
RsaNI	GTAC	3 cut(s)	439, 451, 485
RseI	CAYNNNNRTG	1 cut(s)	252
SacI	GAGCTC	1 cut(s)	339
SalI	GTCGAC	1 cut(s)	529
SaqAI	TTAA	5 cut(s)	96, 321, 405, 677, 803
SatI	GCNGC	3 cut(s)	347, 942, 955
Sau3AI	GATC	5 cut(s)	244, 300, 787, 997, 1001
SduI	GDGCHC	1 cut(s)	339
SfaNI	GCATC	1 cut(s)	610
SmiMI	CAYNNNNRTG	1 cut(s)	252
SmlI	CTYRAG	2 cut(s)	58, 338
SmoI	CTYRAG	2 cut(s)	58, 338
Sse9I	AATT	7 cut(s)	307, 397, 562, 599, 678, 686, 895
SsiI	CCGC	2 cut(s)	184, 912
SspMI	CTAG	1 cut(s)	368
SstI	GAGCTC	1 cut(s)	339
TaaI	ACNGT	3 cut(s)	292, 627, 938
TaiI	ACGT	3 cut(s)	96, 108, 614
TaqI	TCGA	5 cut(s)	81, 161, 280, 530, 1000
TasI	AATT	7 cut(s)	307, 397, 562, 599, 678, 686, 895
TatI	WGTACW	1 cut(s)	438
TfiI	GAWTC	2 cut(s)	6, 174
Tru1I	TTAA	5 cut(s)	96, 321, 405, 677, 803
Tru9I	TTAA	5 cut(s)	96, 321, 405, 677, 803
TscAI	CASTG	1 cut(s)	943
TseFI	GTSAC	1 cut(s)	292
TseI	GCWGC	3 cut(s)	346, 941, 954
Tsp45I	GTSAC	1 cut(s)	292
TspDTI	ATGAA	3 cut(s)	44, 612, 761
TspGWI	ACGGA	1 cut(s)	701
TspRI	CASTG	1 cut(s)	943
Tth111I	GACNNNGTC	2 cut(s)	209, 989
XapI	RAATTY	3 cut(s)	397, 562, 686
XceI	RCATGY	1 cut(s)	950
XcmI	CCANNNNNNNNNTGG	1 cut(s)	883
XmiI	GTMKAC	2 cut(s)	108, 530
XmnI	GAANNNNTTC	1 cut(s)	919
XspI	CTAG	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.