Rorug01G0097300

phosphotransferase activity, carboxyl group as acceptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0002381
Physical Location & Seq
Forward (+)
16098254 .. 16099085
832 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0097300.1

Sequence Viewer

Length: 660 bp
ATGGAGCTCCAAACCCCGCAACAAAAGGAACCACAACAACAGCAACCAACAGAGGAGGGAGGAAACACCCAAGCAGCTGGAAGTAGTGCCAACGTGGATTTCTGGCGAAGCCGTACCAGGTGGATTCCTACTCCAGAACAAATAAGAATCCTCAAGGATCTTTACTACGTCAAGGGATTTAAGTGCCCAACTACAGAGCAGATTCACGAGATCTGTCTCCAGCTGAACCAGTATGGGTATGTTGAGGGTAAGAACATTTACTTTTGGTTCCAGAACGTCAGGGCTCGAGAGAAGCAGATGAATAGGTGTAATCAGGCTGCTCCAGTGCCCATGAGAACTAGTTCTCTTGCTGGTGGATCCATTGACATCAATTTTGGGTCCACTAGTTCTACTGATGATGGTAGATCCATTGATCTCAACTTTGGTTCCACCTATTCTACTGGAGGACAAACATCCCTGCAACAACGAGGAGGAGATCACCAGGAGGTTCAAACTCTTCCTCTGTTCCCCGTGCACGGCGAGGACGTCTTTGGTAACCTGAAGACTACTTCCGAGGAAGGTAGTGCACATGATTACTATTTCGGTGGCTCAGGCGGTTACAACCGTGGATCTCCAGTTTCTCTTGAGCTCAGCCTCAACCCATCCGGAGCTGCTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_18

Protein Analysis

219

Amino Acids

24.23

Weight (kDa)

5.25

Isoelectric Point (pI)

50.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 38 - 99 4.5e-09 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 528
AccIII TCCGGA 1 cut(s) 644
AciI CCGC 2 cut(s) 17, 594
AclWI GGATC 5 cut(s) 165, 351, 364, 399, 616
AcuI CTGAAG 1 cut(s) 560
AcyI GRCGYC 1 cut(s) 525
AfaI GTAC 1 cut(s) 115
AfiI CCNNNNNNNGG 1 cut(s) 515
AgsI TTSAA 1 cut(s) 491
AhlI ACTAGT 2 cut(s) 338, 383
AjnI CCWGG 2 cut(s) 116, 480
AjuI GAANNNNNNNTTGG 2 cut(s) 83, 115
AluBI AGCT 5 cut(s) 7, 77, 223, 628, 650
AluI AGCT 5 cut(s) 7, 77, 223, 628, 650
Alw21I GWGCWC 4 cut(s) 9, 516, 568, 630
Alw26I GTCTC 1 cut(s) 221
Alw44I GTGCAC 2 cut(s) 512, 564
AlwI GGATC 5 cut(s) 165, 351, 364, 399, 616
Ama87I CYCGRG 1 cut(s) 285
Aor13HI TCCGGA 1 cut(s) 644
ApaLI GTGCAC 2 cut(s) 512, 564
ApeKI GCWGC 3 cut(s) 74, 317, 650
ArsI GACNNNNNNTTYG 2 cut(s) 356, 388
Asp700I GAANNNNTTC 1 cut(s) 340
AspS9I GGNCC 1 cut(s) 378
AsuHPI GGTGA 1 cut(s) 470
AvaI CYCGRG 1 cut(s) 285
AvaII GGWCC 1 cut(s) 378
BaeGI GKGCMC 4 cut(s) 188, 330, 516, 568
BamHI GGATCC 1 cut(s) 356
BanII GRGCYC 3 cut(s) 9, 286, 630
BauI CACGAG 1 cut(s) 206
BbsI GAAGAC 1 cut(s) 548
Bbv12I GWGCWC 4 cut(s) 9, 516, 568, 630
BbvI GCAGC 3 cut(s) 86, 304, 637
BccI CCATC 2 cut(s) 392, 649
BceAI ACGGC 2 cut(s) 96, 532
BciT130I CCWGG 2 cut(s) 118, 482
BcoDI GTCTC 1 cut(s) 221
BcuI ACTAGT 2 cut(s) 338, 383
BfaI CTAG 3 cut(s) 339, 384, 658
BfmI CTRYAG 1 cut(s) 192
BglII AGATCT 1 cut(s) 210
BisI GCNGC 3 cut(s) 75, 318, 651
BlpI GCTNAGC 1 cut(s) 629
BlsI GCNGC 3 cut(s) 76, 319, 652
Bme1390I CCNGG 2 cut(s) 118, 482
Bme18I GGWCC 1 cut(s) 378
BmeT110I CYCGRG 1 cut(s) 285
BmgT120I GGNCC 1 cut(s) 378
BmiI GGNNCC 5 cut(s) 30, 269, 358, 379, 427
BmrFI CCNGG 2 cut(s) 118, 482
BpiI GAAGAC 1 cut(s) 548
BpmI CTGGAG 5 cut(s) 117, 203, 306, 462, 597
Bpu10I CCTNAGC 1 cut(s) 589
Bpu1102I GCTNAGC 1 cut(s) 629
BpuEI CTTGAG 2 cut(s) 137, 644
BsaHI GRCGYC 1 cut(s) 525
BsaJI CCNNGG 2 cut(s) 552, 604
BsaWI WCCGGW 1 cut(s) 644
Bsc4I CCNNNNNNNGG 1 cut(s) 515
Bse1I ACTGG 4 cut(s) 229, 323, 445, 614
BseAI TCCGGA 1 cut(s) 644
BseBI CCWGG 2 cut(s) 118, 482
BseDI CCNNGG 2 cut(s) 552, 604
BseGI GGATG 2 cut(s) 452, 641
BseLI CCNNNNNNNGG 1 cut(s) 515
BseMII CTCAG 2 cut(s) 603, 643
BseNI ACTGG 4 cut(s) 229, 323, 445, 614
BseRI GAGGAG 3 cut(s) 68, 483, 486
BseSI GKGCMC 4 cut(s) 188, 330, 516, 568
BseXI GCAGC 3 cut(s) 86, 304, 637
BsiHKAI GWGCWC 4 cut(s) 9, 516, 568, 630
BsiHKCI CYCGRG 1 cut(s) 285
BsiSI CCGG 1 cut(s) 645
BslI CCNNNNNNNGG 1 cut(s) 515
BsmAI GTCTC 1 cut(s) 221
BsoBI CYCGRG 1 cut(s) 285
Bsp1286I GDGCHC 7 cut(s) 9, 188, 286, 330, 516, 568, 630
Bsp13I TCCGGA 1 cut(s) 644
Bsp143I GATC 7 cut(s) 157, 210, 356, 404, 412, 475, 608
Bsp1720I GCTNAGC 1 cut(s) 629
BspACI CCGC 2 cut(s) 17, 594
BspCNI CTCAG 2 cut(s) 602, 642
BspEI TCCGGA 1 cut(s) 644
BspLI GGNNCC 5 cut(s) 30, 269, 358, 379, 427
BspPI GGATC 5 cut(s) 165, 351, 364, 399, 616
BsrI ACTGG 4 cut(s) 229, 323, 445, 614
BssECI CCNNGG 2 cut(s) 552, 604
BssMI GATC 7 cut(s) 157, 210, 356, 404, 412, 475, 608
BssNI GRCGYC 1 cut(s) 525
BssSI CACGAG 1 cut(s) 206
Bst2BI CACGAG 1 cut(s) 206
Bst2UI CCWGG 2 cut(s) 118, 482
Bst4CI ACNGT 1 cut(s) 605
Bst6I CTCTTC 1 cut(s) 501
BstACI GRCGYC 1 cut(s) 525
BstDEI CTNAG 2 cut(s) 589, 629
BstDSI CCRYGG 1 cut(s) 604
BstEII GGTNACC 1 cut(s) 533
BstF5I GGATG 2 cut(s) 452, 641
BstKTI GATC 7 cut(s) 160, 213, 359, 407, 415, 478, 611
BstMAI GTCTC 1 cut(s) 221
BstMBI GATC 7 cut(s) 157, 210, 356, 404, 412, 475, 608
BstNI CCWGG 2 cut(s) 118, 482
BstPI GGTNACC 1 cut(s) 533
BstSCI CCNGG 2 cut(s) 116, 480
BstSFI CTRYAG 1 cut(s) 192
BstSLI GKGCMC 4 cut(s) 188, 330, 516, 568
BstV1I GCAGC 3 cut(s) 86, 304, 637
BstV2I GAAGAC 1 cut(s) 548
BstX2I RGATCY 5 cut(s) 157, 210, 356, 404, 608
BstXI CCANNNNNNTGG 1 cut(s) 77
BstYI RGATCY 5 cut(s) 157, 210, 356, 404, 608
BtgI CCRYGG 1 cut(s) 604
BtsCI GGATG 2 cut(s) 452, 641
BtsIMutI CAGTG 1 cut(s) 330
Cfr13I GGNCC 1 cut(s) 378
CsiI ACCWGGT 1 cut(s) 116
Csp6I GTAC 1 cut(s) 114
CviAII CATG 2 cut(s) 331, 569
CviQI GTAC 1 cut(s) 114
DdeI CTNAG 2 cut(s) 589, 629
DpnI GATC 7 cut(s) 159, 212, 358, 406, 414, 477, 610
DpnII GATC 7 cut(s) 157, 210, 356, 404, 412, 475, 608
Eam1104I CTCTTC 1 cut(s) 501
EarI CTCTTC 1 cut(s) 501
Ecl136II GAGCTC 2 cut(s) 7, 628
Eco24I GRGCYC 3 cut(s) 9, 286, 630
Eco47I GGWCC 1 cut(s) 378
Eco53kI GAGCTC 2 cut(s) 7, 628
Eco57I CTGAAG 1 cut(s) 560
Eco88I CYCGRG 1 cut(s) 285
Eco91I GGTNACC 1 cut(s) 533
EcoICRI GAGCTC 2 cut(s) 7, 628
EcoO65I GGTNACC 1 cut(s) 533
EcoRII CCWGG 2 cut(s) 116, 480
EcoT38I GRGCYC 3 cut(s) 9, 286, 630
FaeI CATG 2 cut(s) 334, 572
FaiI YATR 4 cut(s) 234, 240, 332, 570
FatI CATG 2 cut(s) 330, 568
FauI CCCGC 1 cut(s) 24
Fnu4HI GCNGC 3 cut(s) 75, 318, 651
FokI GGATG 2 cut(s) 439, 628
FriOI GRGCYC 3 cut(s) 9, 286, 630
Fsp4HI GCNGC 3 cut(s) 75, 318, 651
FspBI CTAG 3 cut(s) 339, 384, 658
GluI GCNGC 3 cut(s) 75, 318, 651
GsuI CTGGAG 5 cut(s) 117, 203, 306, 462, 597
HapII CCGG 1 cut(s) 645
Hin1I GRCGYC 1 cut(s) 525
Hin1II CATG 2 cut(s) 334, 572
HinfI GANTC 3 cut(s) 124, 147, 202
HpaII CCGG 1 cut(s) 645
HphI GGTGA 1 cut(s) 470
Hpy166II GTNNAC 3 cut(s) 381, 514, 566
Hpy188I TCNGA 1 cut(s) 553
Hpy188III TCNNGA 6 cut(s) 134, 206, 271, 287, 623, 645
Hpy8I GTNNAC 3 cut(s) 381, 514, 566
HpyAV CCTTC 1 cut(s) 551
HpyCH4III ACNGT 1 cut(s) 605
HpyCH4IV ACGT 4 cut(s) 93, 168, 276, 525
HpyCH4V TGCA 3 cut(s) 460, 514, 566
HpyF3I CTNAG 2 cut(s) 589, 629
HpySE526I ACGT 4 cut(s) 93, 168, 276, 525
Hsp92I GRCGYC 1 cut(s) 525
Hsp92II CATG 2 cut(s) 334, 572
Kpn2I TCCGGA 1 cut(s) 644
Kzo9I GATC 7 cut(s) 157, 210, 356, 404, 412, 475, 608
LmnI GCTCC 4 cut(s) 4, 12, 325, 647
Lsp1109I GCAGC 3 cut(s) 86, 304, 637
MabI ACCWGGT 1 cut(s) 116
MaeI CTAG 3 cut(s) 339, 384, 658
MaeII ACGT 4 cut(s) 93, 168, 276, 525
MaeIII GTNAC 2 cut(s) 533, 596
MalI GATC 7 cut(s) 159, 212, 358, 406, 414, 477, 610
MboI GATC 7 cut(s) 157, 210, 356, 404, 412, 475, 608
MboII GAAGA 2 cut(s) 488, 553
MflI RGATCY 5 cut(s) 157, 210, 356, 404, 608
MhlI GDGCHC 7 cut(s) 9, 188, 286, 330, 516, 568, 630
MluCI AATT 1 cut(s) 370
MroI TCCGGA 1 cut(s) 644
MroXI GAANNNNTTC 1 cut(s) 340
MseI TTAA 1 cut(s) 180
MspA1I CMGCKG 2 cut(s) 77, 223
MspI CCGG 1 cut(s) 645
MspR9I CCNGG 2 cut(s) 118, 482
MvaI CCWGG 2 cut(s) 118, 482
NdeII GATC 7 cut(s) 157, 210, 356, 404, 412, 475, 608
NlaIII CATG 2 cut(s) 334, 572
NlaIV GGNNCC 5 cut(s) 30, 269, 358, 379, 427
PaeR7I CTCGAG 1 cut(s) 285
PcsI WCGNNNNNNNCGW 1 cut(s) 522
PdmI GAANNNNTTC 1 cut(s) 340
PfeI GAWTC 3 cut(s) 124, 147, 202
PkrI GCNGC 3 cut(s) 76, 319, 652
Psp124BI GAGCTC 2 cut(s) 9, 630
Psp6I CCWGG 2 cut(s) 116, 480
PspEI GGTNACC 1 cut(s) 533
PspGI CCWGG 2 cut(s) 116, 480
PspN4I GGNNCC 5 cut(s) 30, 269, 358, 379, 427
PspPI GGNCC 1 cut(s) 378
PsuI RGATCY 5 cut(s) 157, 210, 356, 404, 608
PvuII CAGCTG 2 cut(s) 77, 223
RsaI GTAC 1 cut(s) 115
RsaNI GTAC 1 cut(s) 114
SacI GAGCTC 2 cut(s) 9, 630
SaqAI TTAA 1 cut(s) 180
SatI GCNGC 3 cut(s) 75, 318, 651
Sau3AI GATC 7 cut(s) 157, 210, 356, 404, 412, 475, 608
Sau96I GGNCC 1 cut(s) 378
ScrFI CCNGG 2 cut(s) 118, 482
SduI GDGCHC 7 cut(s) 9, 188, 286, 330, 516, 568, 630
SexAI ACCWGGT 1 cut(s) 116
SfcI CTRYAG 1 cut(s) 192
Sfr274I CTCGAG 1 cut(s) 285
SinI GGWCC 1 cut(s) 378
SlaI CTCGAG 1 cut(s) 285
SmlI CTYRAG 3 cut(s) 152, 285, 623
SmoI CTYRAG 3 cut(s) 152, 285, 623
SpeI ACTAGT 2 cut(s) 338, 383
Sse9I AATT 1 cut(s) 370
SsiI CCGC 2 cut(s) 17, 594
SspMI CTAG 3 cut(s) 339, 384, 658
SstI GAGCTC 2 cut(s) 9, 630
StyD4I CCNGG 2 cut(s) 116, 480
TaaI ACNGT 1 cut(s) 605
TaiI ACGT 4 cut(s) 96, 171, 279, 528
TaqI TCGA 1 cut(s) 286
TasI AATT 1 cut(s) 370
TfiI GAWTC 3 cut(s) 124, 147, 202
Tru1I TTAA 1 cut(s) 180
Tru9I TTAA 1 cut(s) 180
TscAI CASTG 1 cut(s) 330
TseI GCWGC 3 cut(s) 74, 317, 650
TspDTI ATGAA 1 cut(s) 314
TspRI CASTG 1 cut(s) 330
VneI GTGCAC 2 cut(s) 512, 564
VpaK11BI GGWCC 1 cut(s) 378
XhoI CTCGAG 1 cut(s) 285
XmnI GAANNNNTTC 1 cut(s) 340
XspI CTAG 3 cut(s) 339, 384, 658
ZraI GACGTC 1 cut(s) 526
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.