Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0002381

Physical Location & Seq

Genomic Coordinates Forward (+)

27780102 .. 27784161

Gene Structure 4060 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G276100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGGGTCGTAGAATCATCAACGCTTCCTCCAAATACGACTTTGTCAAGGTGAAGGTGTGGTTGGGTGATGATGCCGAGCACTACTACGTTTTTTCCAGGTTTTTGCTCAGCCGAATGTTAACCGTCACTAAGATCCCAAATCATGCAGCTGTCAAAATCGCTCTTGAGCTCAAGAAGCTGCTCGTAGACAACAGCCTTCTAGATGTCTCGCAGTCTGATTTGGAAGCTAATATGTTTAAGCTTATGGAGCAAAGGGGTTATGGGGAAGAGTACGTAAATCATTACAAGATGATGACTAGATTTCACCATCAAAGAGTGCCACTAATTATTCTTTTATGTGGAACTGCCTGTGTCGGAAAGTCCACCATAGCTACCCAAATTTCACAAAGGCTGAATTTGCCTAATGTCATGCAGACAGATGTAGTATATGAATTGCTGCGCACATCCACAGATGCACCATTGGCATCTACTCCTGTGTGGGCACGAGACTTCAGCTCCTCCGAAGAGTTGATTACTGAATTTTGTAGGGAATGCAGGATTGTTCGTAAAGGATTGGCTGGTGACTTGAAGAAAGCACTCAAGGATGGAAAACCGATAATAATAGAGGGAATGCATTTGGATCCAAACATTTATTTAATGGATTATGAAAACAAACCATCAGCTCCTGTGGAAGAGAAAACTCTGGAGGCAAATGAGTGTGCCAGCACGGAAGAAGGGACAACAGCTAACAAGGTTAACAAAGTTTCAGACTACCTGGAAGCCATTGGCCTAGCAGGAAGTGTTTCTGAGATTAAAAACGGTGCAAGTCCTAAAGGTCCAGAGGAGCTTAAAAGCACTTCTGTTGAGAAAGAGAAGTCTGGTCCTGGACCACTAATTATACCTCTAGTTCTGAAGATGGCTGAATTTGATCATAATACTTTACTAGAGGAGTGGTTCTCAACTTATACATTTAGCGATAGACTTCTAGGCCAGGACAGAGATAAGCTGATAAGCAACTTAAACACCATTCAGGACTATCTTTGCTCATTCAACTCCAAGGGCTCGACAGTTCTCAATCTATCAGCAACTACATTCAACCCAACATTGGATTGGCTGCATGGCTATCTTCTTGAGTGTATCGAGCAAGGCATTTCGCCGCTGTCCAATGACAATGTCAGGCGGCTTGTGGAAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_18

Protein Analysis

392

Amino Acids

43.91

Weight (kDa)

5.62

Isoelectric Point (pI)

39.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61450
fragaria_vesca	FvH4_2g12100 FvH4_3g27272 FvH4_5g28373 FvH4_7g05310 FvH4_7g05310 FvH4_7g05310 FvH4_7g05310 FvH4_7g05310 FvH4_7g27310 FvH4_c2g00051
malus_domestica	MD01G1182200.v1.1 MD07G1252500.v1.1 MD07G1252600.v1.1
prunus_persica	Prupe.2G276000_v2.0.a1 Prupe.2G276100_v2.0.a1 Prupe.2G276100_v2.0.a1
pyrus_communis	pycom01g19200 pycom07g22490 pycom07g22500 pycom07g22520
rosa_chinensis	RchiOBHm_Chr1g0331961 RchiOBHm_Chr1g0374151
rosa_laevigata	RLG00000026758 RLG00000029700
rosa_multiflora	Rmu_sc0008128.1_g000007
rosa_roxburghii	Rroxscaffold_4G00283680 Rroxscaffold_4G00318580
rosa_rugosa	Rorug01G0097200 Rorug01G0097300 Rorug01G0097400 Rorug01G0381100
rosa_samantha	Rh1AG121300 Rh1AG392100 Rh1BG092900 Rh1BG356100 Rh1CG116100 Rh1CG369000 Rh1DG127200 Rh1DG386600
rosa_wichuraiana	Rw1G009900 Rw1G034360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	440
AccI	GTMKAC	1 cut(s)	186
AciI	CCGC	2 cut(s)	1136, 1159
AclWI	GGATC	3 cut(s)	127, 614, 627
AcsI	RAATTY	4 cut(s)	378, 394, 518, 902
AcuI	CTGAAG	2 cut(s)	475, 911
AfaI	GTAC	1 cut(s)	272
AfiI	CCNNNNNNNGG	1 cut(s)	1084
AgsI	TTSAA	3 cut(s)	568, 1030, 1075
AjnI	CCWGG	4 cut(s)	95, 753, 862, 969
AjuI	GAANNNNNNNTTGG	2 cut(s)	44, 76
Alw21I	GWGCWC	2 cut(s)	81, 171
Alw26I	GTCTC	2 cut(s)	211, 480
AlwI	GGATC	3 cut(s)	127, 614, 627
AlwNI	CAGNNNCTG	1 cut(s)	665
AoxI	GGCC	2 cut(s)	766, 967
ApeKI	GCWGC	4 cut(s)	146, 178, 436, 1093
ApoI	RAATTY	4 cut(s)	378, 394, 518, 902
Asp700I	GAANNNNTTC	1 cut(s)	781
AspLEI	GCGC	1 cut(s)	441
AspS9I	GGNCC	3 cut(s)	815, 860, 866
AsuHPI	GGTGA	4 cut(s)	61, 77, 296, 572
AvaII	GGWCC	3 cut(s)	815, 860, 866
BaeGI	GKGCMC	1 cut(s)	484
BamHI	GGATCC	1 cut(s)	619
BanII	GRGCYC	2 cut(s)	171, 1043
BauI	CACGAG	1 cut(s)	483
Bbv12I	GWGCWC	2 cut(s)	81, 171
BbvI	GCAGC	4 cut(s)	158, 165, 423, 1080
BccI	CCATC	4 cut(s)	315, 578, 664, 889
BciT130I	CCWGG	4 cut(s)	97, 755, 864, 971
BclI	TGATCA	1 cut(s)	907
BcoDI	GTCTC	2 cut(s)	211, 480
BfaI	CTAG	6 cut(s)	200, 297, 770, 884, 923, 965
BisI	GCNGC	6 cut(s)	147, 179, 437, 1094, 1136, 1160
BlpI	GCTNAGC	1 cut(s)	107
BlsI	GCNGC	6 cut(s)	148, 180, 438, 1095, 1137, 1161
Bme1390I	CCNGG	4 cut(s)	97, 755, 864, 971
Bme18I	GGWCC	3 cut(s)	815, 860, 866
BmgT120I	GGNCC	3 cut(s)	815, 860, 866
BmiI	GGNNCC	1 cut(s)	621
BmrFI	CCNGG	4 cut(s)	97, 755, 864, 971
BmsI	GCATC	3 cut(s)	61, 442, 473
BplI	GAGNNNNNCTC	2 cut(s)	920, 952
BpmI	CTGGAG	1 cut(s)	704
Bpu1102I	GCTNAGC	1 cut(s)	107
BpuEI	CTTGAG	4 cut(s)	155, 185, 563, 1130
BsaAI	YACGTR	1 cut(s)	274
BsaJI	CCNNGG	1 cut(s)	1035
BsaXI	ACNNNNNCTCC	4 cut(s)	11, 41, 479, 509
Bsc4I	CCNNNNNNNGG	1 cut(s)	1084
BseBI	CCWGG	4 cut(s)	97, 755, 864, 971
BseDI	CCNNGG	1 cut(s)	1035
BseGI	GGATG	2 cut(s)	443, 589
BseLI	CCNNNNNNNGG	1 cut(s)	1084
BseMII	CTCAG	2 cut(s)	121, 777
BseRI	GAGGAG	3 cut(s)	487, 836, 941
BseSI	GKGCMC	1 cut(s)	484
BseXI	GCAGC	4 cut(s)	158, 165, 423, 1080
BshFI	GGCC	2 cut(s)	768, 969
BsiHKAI	GWGCWC	2 cut(s)	81, 171
BslFI	GGGAC	1 cut(s)	730
BslI	CCNNNNNNNGG	1 cut(s)	1084
BsmAI	GTCTC	2 cut(s)	211, 480
BsmFI	GGGAC	1 cut(s)	730
BsmI	GAATGC	2 cut(s)	536, 615
BsnI	GGCC	2 cut(s)	768, 969
Bsp1286I	GDGCHC	4 cut(s)	81, 171, 484, 1043
Bsp143I	GATC	3 cut(s)	132, 619, 907
Bsp1720I	GCTNAGC	1 cut(s)	107
BspACI	CCGC	2 cut(s)	1136, 1159
BspANI	GGCC	2 cut(s)	768, 969
BspCNI	CTCAG	2 cut(s)	120, 778
BspLI	GGNNCC	1 cut(s)	621
BspPI	GGATC	3 cut(s)	127, 614, 627
BssECI	CCNNGG	1 cut(s)	1035
BssMI	GATC	3 cut(s)	132, 619, 907
BssSI	CACGAG	1 cut(s)	483
BssT1I	CCWWGG	1 cut(s)	1035
Bst2BI	CACGAG	1 cut(s)	483
Bst2UI	CCWGG	4 cut(s)	97, 755, 864, 971
Bst4CI	ACNGT	3 cut(s)	124, 800, 1048
Bst6I	CTCTTC	3 cut(s)	261, 498, 666
BstBAI	YACGTR	1 cut(s)	274
BstC8I	GCNNGC	1 cut(s)	703
BstDEI	CTNAG	3 cut(s)	107, 129, 786
BstF5I	GGATG	2 cut(s)	443, 589
BstHHI	GCGC	1 cut(s)	441
BstKTI	GATC	3 cut(s)	135, 622, 910
BstMAI	GTCTC	2 cut(s)	211, 480
BstMBI	GATC	3 cut(s)	132, 619, 907
BstMWI	GCNNNNNNNGC	4 cut(s)	175, 247, 397, 461
BstNI	CCWGG	4 cut(s)	97, 755, 864, 971
BstSCI	CCNGG	4 cut(s)	95, 753, 862, 969
BstSLI	GKGCMC	1 cut(s)	484
BstSNI	TACGTA	1 cut(s)	274
BstV1I	GCAGC	4 cut(s)	158, 165, 423, 1080
BstX2I	RGATCY	2 cut(s)	132, 619
BstYI	RGATCY	2 cut(s)	132, 619
BsuRI	GGCC	2 cut(s)	768, 969
BtsCI	GGATG	2 cut(s)	443, 589
Cac8I	GCNNGC	1 cut(s)	703
CaiI	CAGNNNCTG	1 cut(s)	665
CfoI	GCGC	1 cut(s)	441
Cfr13I	GGNCC	3 cut(s)	815, 860, 866
Csp6I	GTAC	1 cut(s)	271
CviAII	CATG	3 cut(s)	143, 409, 1097
CviQI	GTAC	1 cut(s)	271
DdeI	CTNAG	3 cut(s)	107, 129, 786
DpnI	GATC	3 cut(s)	134, 621, 909
DpnII	GATC	3 cut(s)	132, 619, 907
Eam1104I	CTCTTC	3 cut(s)	261, 498, 666
EarI	CTCTTC	3 cut(s)	261, 498, 666
Ecl136II	GAGCTC	1 cut(s)	169
Eco105I	TACGTA	1 cut(s)	274
Eco130I	CCWWGG	1 cut(s)	1035
Eco24I	GRGCYC	2 cut(s)	171, 1043
Eco47I	GGWCC	3 cut(s)	815, 860, 866
Eco53kI	GAGCTC	1 cut(s)	169
Eco57I	CTGAAG	2 cut(s)	475, 911
EcoICRI	GAGCTC	1 cut(s)	169
EcoRII	CCWGG	4 cut(s)	95, 753, 862, 969
EcoT14I	CCWWGG	1 cut(s)	1035
EcoT22I	ATGCAT	1 cut(s)	615
EcoT38I	GRGCYC	2 cut(s)	171, 1043
ErhI	CCWWGG	1 cut(s)	1035
FaeI	CATG	3 cut(s)	146, 412, 1100
FaqI	GGGAC	1 cut(s)	730
FatI	CATG	3 cut(s)	142, 408, 1096
FbaI	TGATCA	1 cut(s)	907
FblI	GTMKAC	1 cut(s)	186
Fnu4HI	GCNGC	6 cut(s)	147, 179, 437, 1094, 1136, 1160
FokI	GGATG	2 cut(s)	430, 596
FriOI	GRGCYC	2 cut(s)	171, 1043
Fsp4HI	GCNGC	6 cut(s)	147, 179, 437, 1094, 1136, 1160
FspBI	CTAG	6 cut(s)	200, 297, 770, 884, 923, 965
FspI	TGCGCA	1 cut(s)	440
GlaI	GCGC	1 cut(s)	440
GluI	GCNGC	6 cut(s)	147, 179, 437, 1094, 1136, 1160
GsuI	CTGGAG	1 cut(s)	704
HaeIII	GGCC	2 cut(s)	768, 969
HhaI	GCGC	1 cut(s)	441
Hin1II	CATG	3 cut(s)	146, 412, 1100
Hin6I	GCGC	1 cut(s)	439
HinP1I	GCGC	1 cut(s)	439
HincII	GTYRAC	2 cut(s)	120, 736
HindII	GTYRAC	2 cut(s)	120, 736
HindIII	AAGCTT	1 cut(s)	239
HinfI	GANTC	1 cut(s)	12
HpaI	GTTAAC	2 cut(s)	120, 736
HphI	GGTGA	4 cut(s)	61, 77, 296, 572
Hpy166II	GTNNAC	4 cut(s)	120, 187, 363, 736
Hpy188I	TCNGA	6 cut(s)	217, 356, 502, 748, 787, 891
Hpy188III	TCNNGA	7 cut(s)	164, 172, 200, 683, 818, 1010, 1109
Hpy8I	GTNNAC	4 cut(s)	120, 187, 363, 736
HpyAV	CCTTC	3 cut(s)	46, 206, 707
HpyCH4III	ACNGT	3 cut(s)	124, 800, 1048
HpyCH4IV	ACGT	2 cut(s)	87, 273
HpyCH4V	TGCA	7 cut(s)	146, 412, 455, 534, 613, 803, 1096
HpyF10VI	GCNNNNNNNGC	4 cut(s)	175, 247, 397, 461
HpyF3I	CTNAG	3 cut(s)	107, 129, 786
HpySE526I	ACGT	2 cut(s)	87, 273
Hsp92II	CATG	3 cut(s)	146, 412, 1100
HspAI	GCGC	1 cut(s)	439
Ksp22I	TGATCA	1 cut(s)	907
KspAI	GTTAAC	2 cut(s)	120, 736
Kzo9I	GATC	3 cut(s)	132, 619, 907
LmnI	GCTCC	4 cut(s)	247, 500, 667, 823
Lsp1109I	GCAGC	4 cut(s)	158, 165, 423, 1080
LweI	GCATC	3 cut(s)	61, 442, 473
MaeI	CTAG	6 cut(s)	200, 297, 770, 884, 923, 965
MaeII	ACGT	2 cut(s)	87, 273
MaeIII	GTNAC	2 cut(s)	124, 560
MalI	GATC	3 cut(s)	134, 621, 909
MboI	GATC	3 cut(s)	132, 619, 907
MboII	GAAGA	7 cut(s)	278, 515, 580, 683, 722, 904, 1097
MflI	RGATCY	2 cut(s)	132, 619
MhlI	GDGCHC	4 cut(s)	81, 171, 484, 1043
MluCI	AATT	8 cut(s)	324, 378, 394, 431, 518, 873, 902, 1171
MmeI	TCCRAC	1 cut(s)	334
MnlI	CCTC	7 cut(s)	37, 508, 598, 679, 814, 891, 919
Mph1103I	ATGCAT	1 cut(s)	615
MroXI	GAANNNNTTC	1 cut(s)	781
MseI	TTAA	7 cut(s)	119, 237, 635, 735, 792, 828, 998
MspA1I	CMGCKG	2 cut(s)	149, 1138
MspR9I	CCNGG	4 cut(s)	97, 755, 864, 971
Mva1269I	GAATGC	2 cut(s)	536, 615
MvaI	CCWGG	4 cut(s)	97, 755, 864, 971
MwoI	GCNNNNNNNGC	4 cut(s)	175, 247, 397, 461
NdeII	GATC	3 cut(s)	132, 619, 907
NlaIII	CATG	3 cut(s)	146, 412, 1100
NlaIV	GGNNCC	1 cut(s)	621
NmeAIII	GCCGAG	1 cut(s)	100
NmuCI	GTSAC	2 cut(s)	124, 560
NsbI	TGCGCA	1 cut(s)	440
NsiI	ATGCAT	1 cut(s)	615
PctI	GAATGC	2 cut(s)	536, 615
PdmI	GAANNNNTTC	1 cut(s)	781
PfeI	GAWTC	1 cut(s)	12
PflFI	GACNNNGTC	2 cut(s)	41, 1151
PfoI	TCCNGGA	1 cut(s)	862
PkrI	GCNGC	6 cut(s)	148, 180, 438, 1095, 1137, 1161
Ppu21I	YACGTR	1 cut(s)	274
Psp124BI	GAGCTC	1 cut(s)	171
Psp6I	CCWGG	4 cut(s)	95, 753, 862, 969
PspGI	CCWGG	4 cut(s)	95, 753, 862, 969
PspN4I	GGNNCC	1 cut(s)	621
PspPI	GGNCC	3 cut(s)	815, 860, 866
PstNI	CAGNNNCTG	1 cut(s)	665
PsuI	RGATCY	2 cut(s)	132, 619
PsyI	GACNNNGTC	2 cut(s)	41, 1151
PvuII	CAGCTG	1 cut(s)	149
RsaI	GTAC	1 cut(s)	272
RsaNI	GTAC	1 cut(s)	271
SacI	GAGCTC	1 cut(s)	171
SaqAI	TTAA	7 cut(s)	119, 237, 635, 735, 792, 828, 998
SatI	GCNGC	6 cut(s)	147, 179, 437, 1094, 1136, 1160
Sau3AI	GATC	3 cut(s)	132, 619, 907
Sau96I	GGNCC	3 cut(s)	815, 860, 866
ScrFI	CCNGG	4 cut(s)	97, 755, 864, 971
SduI	GDGCHC	4 cut(s)	81, 171, 484, 1043
SfaNI	GCATC	3 cut(s)	61, 442, 473
SinI	GGWCC	3 cut(s)	815, 860, 866
SmlI	CTYRAG	4 cut(s)	164, 170, 578, 1109
SmoI	CTYRAG	4 cut(s)	164, 170, 578, 1109
SnaBI	TACGTA	1 cut(s)	274
Sse9I	AATT	8 cut(s)	324, 378, 394, 431, 518, 873, 902, 1171
SsiI	CCGC	2 cut(s)	1136, 1159
SspMI	CTAG	6 cut(s)	200, 297, 770, 884, 923, 965
SstI	GAGCTC	1 cut(s)	171
StyD4I	CCNGG	4 cut(s)	95, 753, 862, 969
StyI	CCWWGG	1 cut(s)	1035
TaaI	ACNGT	3 cut(s)	124, 800, 1048
TaiI	ACGT	2 cut(s)	90, 276
TaqI	TCGA	2 cut(s)	1043, 1119
TasI	AATT	8 cut(s)	324, 378, 394, 431, 518, 873, 902, 1171
TauI	GCSGC	2 cut(s)	1138, 1162
TfiI	GAWTC	1 cut(s)	12
Tru1I	TTAA	7 cut(s)	119, 237, 635, 735, 792, 828, 998
Tru9I	TTAA	7 cut(s)	119, 237, 635, 735, 792, 828, 998
TseFI	GTSAC	2 cut(s)	124, 560
TseI	GCWGC	4 cut(s)	146, 178, 436, 1093
Tsp45I	GTSAC	2 cut(s)	124, 560
TspDTI	ATGAA	2 cut(s)	444, 660
TspGWI	ACGGA	1 cut(s)	722
Tth111I	GACNNNGTC	2 cut(s)	41, 1151
VpaK11BI	GGWCC	3 cut(s)	815, 860, 866
XapI	RAATTY	4 cut(s)	378, 394, 518, 902
XbaI	TCTAGA	1 cut(s)	199
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1086
XmiI	GTMKAC	1 cut(s)	186
XmnI	GAANNNNTTC	1 cut(s)	781
XspI	CTAG	6 cut(s)	200, 297, 770, 884, 923, 965
Zsp2I	ATGCAT	1 cut(s)	615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.