Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0002381

Physical Location & Seq

Genomic Coordinates Forward (+)

17978033 .. 17980857

Gene Structure 2825 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g19200.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGAAAATGTCATTGACAGTCCTTGGAAAAAATTTCATTCATTCTCTCCCCTCCCACACACGCAACTCTCTTTCTCTGCAACTCCACCCTCCAACTGCAACAACAGTGGGATTCCACCCAGACACCCAGAAGATGAACAACAACAACAAGGGCAAAGCAGTCGCCGTCTCAAGCCCCAACGTCAACGACATCGACGACGACGACGACGGCAACGGTAACATCAGCGAAGACGAATTGGACGACGACAACAACAGAAGCAGTGGCGTCTCTTCGACTTCCATCAGATTCTCGTCCCGCAACACTTCCTCCAAATACGACTTCGTCAAGGTGAAGGTCTGGCTGGGTGATAATGCAGACCACTACTACGTTCTGTCCAGATTTTTGCTCAGTCGAATGTTGACTGTCACTAAGATCCCAAATTATGTAGCGATTAAAATAGCGCTGGAGCTCAAGAAGTTGCTGATTGACAACAGTCTGCTAGATGTTTCGCAGTCCGATTTAGAAGTCAATTTGTTTAAGCTTATGGAACGAAGGGGATATGGGGAAGAGTACATAAATCGGTACAAGATGATGACCAGATTTCACCATCAACGAGTGCCATTAGTTATTCTTGTATGTGGAACTGCCTGTGTTGGAAAGTCGACCATTGCTACCCAACTCGCACAAAGATTAAATTTGCCTAATGTCTTGCAGACGGATATGGTATATGAATTGTTGCGCACGGCAACAGATGCACCGTTGACATCTACTCCTGTATGGGCACGAGATTTCAGCTCCTCTGAGGAATTAATTACTGAATTTTGTAGGGAATGCAGGATTGTCCGTAAAGGATTGGGTGGTGATATGAAGAAAGCTATGAAAGATGGAAAGCCAATAATAATAGAGTTTTGTAATGCTGAACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_18

Protein Analysis

302

Amino Acids

33.84

Weight (kDa)

7.65

Isoelectric Point (pI)

39.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61450
fragaria_vesca	FvH4_2g12100 FvH4_3g27272 FvH4_5g28373 FvH4_7g05310 FvH4_7g05310 FvH4_7g05310 FvH4_7g05310 FvH4_7g05310 FvH4_7g27310 FvH4_c2g00051
malus_domestica	MD01G1182200.v1.1 MD07G1252500.v1.1 MD07G1252600.v1.1
prunus_persica	Prupe.2G276000_v2.0.a1 Prupe.2G276100_v2.0.a1 Prupe.2G276100_v2.0.a1
pyrus_communis	pycom01g19200 pycom07g22490 pycom07g22500 pycom07g22520
rosa_chinensis	RchiOBHm_Chr1g0331961 RchiOBHm_Chr1g0374151
rosa_laevigata	RLG00000026758 RLG00000029700
rosa_multiflora	Rmu_sc0008128.1_g000007
rosa_roxburghii	Rroxscaffold_4G00283680 Rroxscaffold_4G00318580
rosa_rugosa	Rorug01G0097200 Rorug01G0097300 Rorug01G0097400 Rorug01G0381100
rosa_samantha	Rh1AG121300 Rh1AG392100 Rh1BG092900 Rh1BG356100 Rh1CG116100 Rh1CG369000 Rh1DG127200 Rh1DG386600
rosa_wichuraiana	Rw1G009900 Rw1G034360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	719
AccI	GTMKAC	1 cut(s)	641
AciI	CCGC	1 cut(s)	295
AclWI	GGATC	1 cut(s)	406
AcsI	RAATTY	3 cut(s)	31, 673, 797
AcyI	GRCGYC	1 cut(s)	264
AfaI	GTAC	2 cut(s)	551, 563
AfeI	AGCGCT	1 cut(s)	441
AjuI	GAANNNNNNNTTGG	2 cut(s)	302, 334
AluBI	AGCT	4 cut(s)	448, 520, 774, 854
AluI	AGCT	4 cut(s)	448, 520, 774, 854
Alw21I	GWGCWC	1 cut(s)	450
Alw26I	GTCTC	2 cut(s)	172, 271
AlwI	GGATC	1 cut(s)	406
Aor51HI	AGCGCT	1 cut(s)	441
ApoI	RAATTY	3 cut(s)	31, 673, 797
AseI	ATTAAT	1 cut(s)	788
AspLEI	GCGC	2 cut(s)	442, 720
AsuHPI	GGTGA	4 cut(s)	340, 356, 575, 851
BaeGI	GKGCMC	1 cut(s)	763
BanII	GRGCYC	1 cut(s)	450
BauI	CACGAG	1 cut(s)	762
BbsI	GAAGAC	1 cut(s)	234
Bbv12I	GWGCWC	1 cut(s)	450
BccI	CCATC	3 cut(s)	287, 594, 857
BceAI	ACGGC	3 cut(s)	149, 223, 738
BcgI	CGANNNNNNTGC	2 cut(s)	142, 176
BcoDI	GTCTC	2 cut(s)	172, 271
BfaI	CTAG	1 cut(s)	479
BfoI	RGCGCY	1 cut(s)	443
BmsI	GCATC	1 cut(s)	721
BoxI	GACNNNNGTC	1 cut(s)	471
BpiI	GAAGAC	1 cut(s)	234
BpmI	CTGGAG	1 cut(s)	464
BpuEI	CTTGAG	2 cut(s)	154, 434
BsaHI	GRCGYC	1 cut(s)	264
BsaJI	CCNNGG	1 cut(s)	22
BsaXI	ACNNNNNCTCC	4 cut(s)	290, 320, 733, 763
Bse3DI	GCAATG	1 cut(s)	645
BseDI	CCNNGG	1 cut(s)	22
BseMI	GCAATG	1 cut(s)	645
BseMII	CTCAG	2 cut(s)	400, 771
BseRI	GAGGAG	1 cut(s)	766
BseSI	GKGCMC	1 cut(s)	763
BseYI	CCCAGC	1 cut(s)	340
BsiHKAI	GWGCWC	1 cut(s)	450
BslFI	GGGAC	1 cut(s)	277
BsmAI	GTCTC	2 cut(s)	172, 271
BsmBI	CGTCTC	2 cut(s)	172, 271
BsmFI	GGGAC	1 cut(s)	277
BsmI	GAATGC	1 cut(s)	815
Bsp1286I	GDGCHC	2 cut(s)	450, 763
Bsp143I	GATC	1 cut(s)	411
BspACI	CCGC	1 cut(s)	295
BspCNI	CTCAG	2 cut(s)	399, 772
BspPI	GGATC	1 cut(s)	406
BsrDI	GCAATG	1 cut(s)	645
BssECI	CCNNGG	1 cut(s)	22
BssMI	GATC	1 cut(s)	411
BssNI	GRCGYC	1 cut(s)	264
BssSI	CACGAG	1 cut(s)	762
BssT1I	CCWWGG	1 cut(s)	22
Bst2BI	CACGAG	1 cut(s)	762
Bst4CI	ACNGT	6 cut(s)	19, 106, 215, 403, 473, 738
Bst6I	CTCTTC	2 cut(s)	274, 540
BstACI	GRCGYC	1 cut(s)	264
BstAPI	GCANNNNNTGC	1 cut(s)	731
BstDEI	CTNAG	3 cut(s)	386, 408, 780
BstH2I	RGCGCY	1 cut(s)	443
BstHHI	GCGC	2 cut(s)	442, 720
BstKTI	GATC	1 cut(s)	414
BstMAI	GTCTC	2 cut(s)	172, 271
BstMBI	GATC	1 cut(s)	411
BstMWI	GCNNNNNNNGC	1 cut(s)	731
BstPAI	GACNNNNGTC	1 cut(s)	471
BstSLI	GKGCMC	1 cut(s)	763
BstV2I	GAAGAC	1 cut(s)	234
BstX2I	RGATCY	1 cut(s)	411
BstYI	RGATCY	1 cut(s)	411
BtsI	GCAGTG	1 cut(s)	265
BtsIMutI	CAGTG	2 cut(s)	111, 265
CfoI	GCGC	2 cut(s)	442, 720
CseI	GACGC	1 cut(s)	253
Csp6I	GTAC	2 cut(s)	550, 562
CspCI	CAANNNNNGTGG	2 cut(s)	87, 122
CviJI	RGCY	7 cut(s)	174, 340, 448, 520, 774, 854, 871
CviKI_1	RGCY	7 cut(s)	174, 340, 448, 520, 774, 854, 871
CviQI	GTAC	2 cut(s)	550, 562
DdeI	CTNAG	3 cut(s)	386, 408, 780
DpnI	GATC	1 cut(s)	413
DpnII	GATC	1 cut(s)	411
Eam1104I	CTCTTC	2 cut(s)	274, 540
EarI	CTCTTC	2 cut(s)	274, 540
Ecl136II	GAGCTC	1 cut(s)	448
Eco130I	CCWWGG	1 cut(s)	22
Eco24I	GRGCYC	1 cut(s)	450
Eco47III	AGCGCT	1 cut(s)	441
Eco53kI	GAGCTC	1 cut(s)	448
EcoICRI	GAGCTC	1 cut(s)	448
EcoT14I	CCWWGG	1 cut(s)	22
EcoT38I	GRGCYC	1 cut(s)	450
ErhI	CCWWGG	1 cut(s)	22
Esp3I	CGTCTC	2 cut(s)	172, 271
FaqI	GGGAC	1 cut(s)	277
FauI	CCCGC	1 cut(s)	302
FblI	GTMKAC	1 cut(s)	641
FriOI	GRGCYC	1 cut(s)	450
FspBI	CTAG	1 cut(s)	479
FspI	TGCGCA	1 cut(s)	719
GlaI	GCGC	2 cut(s)	441, 719
GsaI	CCCAGC	1 cut(s)	344
GsuI	CTGGAG	1 cut(s)	464
HaeII	RGCGCY	1 cut(s)	443
HgaI	GACGC	1 cut(s)	253
HhaI	GCGC	2 cut(s)	442, 720
Hin1I	GRCGYC	1 cut(s)	264
Hin6I	GCGC	2 cut(s)	440, 718
HinP1I	GCGC	2 cut(s)	440, 718
HincII	GTYRAC	4 cut(s)	184, 399, 642, 741
HindII	GTYRAC	4 cut(s)	184, 399, 642, 741
HindIII	AAGCTT	1 cut(s)	518
HinfI	GANTC	2 cut(s)	111, 285
HphI	GGTGA	4 cut(s)	340, 356, 575, 851
Hpy166II	GTNNAC	4 cut(s)	184, 399, 642, 741
Hpy188I	TCNGA	3 cut(s)	284, 496, 781
Hpy188III	TCNNGA	2 cut(s)	375, 451
Hpy8I	GTNNAC	4 cut(s)	184, 399, 642, 741
Hpy99I	CGWCG	6 cut(s)	197, 200, 203, 206, 209, 245
HpyAV	CCTTC	2 cut(s)	325, 525
HpyCH4III	ACNGT	6 cut(s)	19, 106, 215, 403, 473, 738
HpyCH4IV	ACGT	2 cut(s)	180, 366
HpyCH4V	TGCA	6 cut(s)	79, 98, 353, 691, 734, 813
HpyF10VI	GCNNNNNNNGC	1 cut(s)	731
HpyF3I	CTNAG	3 cut(s)	386, 408, 780
HpySE526I	ACGT	2 cut(s)	180, 366
Hsp92I	GRCGYC	1 cut(s)	264
HspAI	GCGC	2 cut(s)	440, 718
Kzo9I	GATC	1 cut(s)	411
LmnI	GCTCC	2 cut(s)	445, 779
LweI	GCATC	1 cut(s)	721
MaeI	CTAG	1 cut(s)	479
MaeII	ACGT	2 cut(s)	180, 366
MaeIII	GTNAC	2 cut(s)	215, 403
MalI	GATC	1 cut(s)	413
MboI	GATC	1 cut(s)	411
MboII	GAAGA	5 cut(s)	142, 239, 261, 557, 859
MflI	RGATCY	1 cut(s)	411
MhlI	GDGCHC	2 cut(s)	450, 763
MluCI	AATT	9 cut(s)	31, 233, 418, 508, 673, 710, 785, 789, 797
MmeI	TCCRAC	2 cut(s)	116, 613
MnlI	CCTC	5 cut(s)	61, 99, 316, 775, 787
MseI	TTAA	4 cut(s)	432, 516, 671, 788
Mva1269I	GAATGC	1 cut(s)	815
MwoI	GCNNNNNNNGC	1 cut(s)	731
NdeII	GATC	1 cut(s)	411
NmuCI	GTSAC	1 cut(s)	403
NsbI	TGCGCA	1 cut(s)	719
PcsI	WCGNNNNNNNCGW	4 cut(s)	192, 198, 201, 237
PctI	GAATGC	1 cut(s)	815
PfeI	GAWTC	2 cut(s)	111, 285
PflFI	GACNNNGTC	1 cut(s)	320
PshAI	GACNNNNGTC	1 cut(s)	471
PshBI	ATTAAT	1 cut(s)	788
Psp124BI	GAGCTC	1 cut(s)	450
PspFI	CCCAGC	1 cut(s)	340
PsuI	RGATCY	1 cut(s)	411
PsyI	GACNNNGTC	1 cut(s)	320
RsaI	GTAC	2 cut(s)	551, 563
RsaNI	GTAC	2 cut(s)	550, 562
SacI	GAGCTC	1 cut(s)	450
SalI	GTCGAC	1 cut(s)	640
SaqAI	TTAA	4 cut(s)	432, 516, 671, 788
Sau3AI	GATC	1 cut(s)	411
SduI	GDGCHC	2 cut(s)	450, 763
SetI	ASST	8 cut(s)	183, 330, 336, 369, 450, 522, 776, 856
SfaNI	GCATC	1 cut(s)	721
SmlI	CTYRAG	2 cut(s)	169, 449
SmoI	CTYRAG	2 cut(s)	169, 449
Sse9I	AATT	9 cut(s)	31, 233, 418, 508, 673, 710, 785, 789, 797
SsiI	CCGC	1 cut(s)	295
SspMI	CTAG	1 cut(s)	479
SstI	GAGCTC	1 cut(s)	450
StyI	CCWWGG	1 cut(s)	22
TaaI	ACNGT	6 cut(s)	19, 106, 215, 403, 473, 738
TaiI	ACGT	2 cut(s)	183, 369
TaqI	TCGA	4 cut(s)	192, 272, 391, 641
TasI	AATT	9 cut(s)	31, 233, 418, 508, 673, 710, 785, 789, 797
TatI	WGTACW	1 cut(s)	549
TfiI	GAWTC	2 cut(s)	111, 285
Tru1I	TTAA	4 cut(s)	432, 516, 671, 788
Tru9I	TTAA	4 cut(s)	432, 516, 671, 788
TscAI	CASTG	2 cut(s)	111, 265
TseFI	GTSAC	1 cut(s)	403
Tsp45I	GTSAC	1 cut(s)	403
TspDTI	ATGAA	7 cut(s)	17, 25, 29, 149, 723, 860, 872
TspGWI	ACGGA	2 cut(s)	710, 812
TspRI	CASTG	2 cut(s)	111, 265
Tth111I	GACNNNGTC	1 cut(s)	320
VspI	ATTAAT	1 cut(s)	788
XapI	RAATTY	3 cut(s)	31, 673, 797
XmiI	GTMKAC	1 cut(s)	641
XspI	CTAG	1 cut(s)	479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.