Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0002381

Physical Location & Seq

Genomic Coordinates Forward (+)

20448671 .. 20451898

Gene Structure 3228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g27310.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGGTCGTAAAATAAAGCACGGTTCCTCCAAATACGACTTTGTCAAGGTGAAGGTGTGGCTGGGTGAACATGCCGAGCACTACTACGTGTTTTCCAGGTTTTTACTCAGCCAGAATTTAACTGTTACCAAGATTCCAAACCATATATCTATCAAAATCGCTCTTGATCTCAAGAAGCTACTCGTAGACAATAGCCTTCTAGATGTCTCGCAATTGGATTTGGAAGATAACCTGTTTAAGATTATGGAGCAAAGGGGTTATGCGGAAGATTATGTAAAGCGTTACCGGATGATGACCAGATTTCACCATCAGAGAGTGCCATTAGTTATTATTGTGTGTGGAACTTCCTGTGTTGGAAAGTCCACCATTGCTGCCCAAATTTCACAAAGGTTCAATTTGCCTAATGTCATGCAGACAGATGTGGTGTACGAATTGCTGCGCACATCAACAGATGCACCGTTGGCCTCTACTCCAATATGGGCACGAAACTTCAGCTCTTCGGAAGAGTTGATTACTGAATTTTGTAGAGAATGCCGGGTTGTTCGAAAAGGTTTGGCTGGTGATTTGAAGAAAGCACTGAAAGATGGAAAACCAATAATAATAGAGGGGATGCATTTGGATCCAAACATATTTTTAATGTATGAAGAAAAAACCAACTCACCGGATCTCAACACTAGTACCAATCAGCATGTCAGCTCAGAAAAAGGGAAAGCACCGGCAAGTGTTTCTGAGAACACAGGTGAAACTGTCAAGGGTCCTGACCCAATAGTTATACCTCTGGTTTTGAATATGGCTGAATTTGATCACCAGGCATTGCTAGAGGAGTGGATCTCATCTTGCATATGTAGTGATAGATGGCAAGTTCAGGACACAGATAAGCTGATAAGCAATGTTAAGACAATTCAGGAGTATCTTCACTCATTTGATTCAAAGGGATTGACAGTTCTCAACCTATCAGCAGCGACATTCGCTCAAAAACTAGATTGGCTGCATGGATATCTTCTTGAGCGCATTGAGCAAGGCATGCAATCAGCGTCAAGCGAAAAAGGCCAGCTTGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_18

Protein Analysis

354

Amino Acids

39.99

Weight (kDa)

6.6

Isoelectric Point (pI)

31.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61450
fragaria_vesca	FvH4_2g12100 FvH4_3g27272 FvH4_5g28373 FvH4_7g05310 FvH4_7g05310 FvH4_7g05310 FvH4_7g05310 FvH4_7g05310 FvH4_7g27310 FvH4_c2g00051
malus_domestica	MD01G1182200.v1.1 MD07G1252500.v1.1 MD07G1252600.v1.1
prunus_persica	Prupe.2G276000_v2.0.a1 Prupe.2G276100_v2.0.a1 Prupe.2G276100_v2.0.a1
pyrus_communis	pycom01g19200 pycom07g22490 pycom07g22500 pycom07g22520
rosa_chinensis	RchiOBHm_Chr1g0331961 RchiOBHm_Chr1g0374151
rosa_laevigata	RLG00000026758 RLG00000029700
rosa_multiflora	Rmu_sc0008128.1_g000007
rosa_roxburghii	Rroxscaffold_4G00283680 Rroxscaffold_4G00318580
rosa_rugosa	Rorug01G0097200 Rorug01G0097300 Rorug01G0097400 Rorug01G0381100
rosa_samantha	Rh1AG121300 Rh1AG392100 Rh1BG092900 Rh1BG356100 Rh1CG116100 Rh1CG369000 Rh1DG127200 Rh1DG386600
rosa_wichuraiana	Rw1G009900 Rw1G034360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	440
AccI	GTMKAC	1 cut(s)	186
AciI	CCGC	1 cut(s)	263
AclWI	GGATC	4 cut(s)	614, 627, 672, 836
AcsI	RAATTY	4 cut(s)	115, 378, 518, 797
AcuI	CTGAAG	1 cut(s)	475
AfaI	GTAC	2 cut(s)	428, 679
AflIII	ACRYGT	1 cut(s)	87
AgsI	TTSAA	4 cut(s)	394, 568, 787, 930
AhlI	ACTAGT	1 cut(s)	674
AjnI	CCWGG	2 cut(s)	95, 807
AloI	GAACNNNNNNTCC	2 cut(s)	927, 959
AluBI	AGCT	5 cut(s)	178, 495, 696, 880, 1054
AluI	AGCT	5 cut(s)	178, 495, 696, 880, 1054
Alw21I	GWGCWC	1 cut(s)	81
Alw26I	GTCTC	1 cut(s)	211
AlwI	GGATC	4 cut(s)	614, 627, 672, 836
AoxI	GGCC	2 cut(s)	462, 1048
ApeKI	GCWGC	4 cut(s)	371, 436, 959, 988
ApoI	RAATTY	4 cut(s)	115, 378, 518, 797
AspLEI	GCGC	2 cut(s)	441, 1011
AspS9I	GGNCC	1 cut(s)	755
AsuC2I	CCSGG	1 cut(s)	536
AsuHPI	GGTGA	7 cut(s)	61, 77, 296, 572, 651, 752, 797
AsuII	TTCGAA	1 cut(s)	544
AvaII	GGWCC	1 cut(s)	755
BaeGI	GKGCMC	1 cut(s)	484
BaeI	ACNNNNGTAYC	2 cut(s)	661, 694
BamHI	GGATCC	1 cut(s)	619
Bbv12I	GWGCWC	1 cut(s)	81
BbvI	GCAGC	4 cut(s)	358, 423, 971, 975
BccI	CCATC	3 cut(s)	315, 578, 849
BciT130I	CCWGG	2 cut(s)	97, 809
BclI	TGATCA	1 cut(s)	802
BcnI	CCSGG	1 cut(s)	536
BcoDI	GTCTC	1 cut(s)	211
BcuI	ACTAGT	1 cut(s)	674
BfaI	CTAG	5 cut(s)	200, 675, 818, 980, 1060
BisI	GCNGC	4 cut(s)	372, 437, 960, 989
BlsI	GCNGC	4 cut(s)	373, 438, 961, 990
Bme1390I	CCNGG	3 cut(s)	97, 536, 809
Bme18I	GGWCC	1 cut(s)	755
BmgT120I	GGNCC	1 cut(s)	755
BmiI	GGNNCC	3 cut(s)	25, 621, 756
BmrFI	CCNGG	3 cut(s)	97, 536, 809
BmsI	GCATC	2 cut(s)	442, 600
BplI	GAGNNNNNCTC	2 cut(s)	815, 847
Bpu14I	TTCGAA	1 cut(s)	544
BpuEI	CTTGAG	2 cut(s)	155, 1025
BpuMI	CCSGG	1 cut(s)	536
BsaAI	YACGTR	1 cut(s)	88
BsaWI	WCCGGW	2 cut(s)	285, 661
BsaXI	ACNNNNNCTCC	2 cut(s)	11, 41
Bse118I	RCCGGY	1 cut(s)	715
Bse3DI	GCAATG	3 cut(s)	366, 812, 895
BseBI	CCWGG	2 cut(s)	97, 809
BseGI	GGATG	2 cut(s)	294, 615
BseMI	GCAATG	3 cut(s)	366, 812, 895
BseMII	CTCAG	3 cut(s)	121, 711, 720
BseRI	GAGGAG	1 cut(s)	836
BseSI	GKGCMC	1 cut(s)	484
BseXI	GCAGC	4 cut(s)	358, 423, 971, 975
BseYI	CCCAGC	1 cut(s)	61
BshFI	GGCC	2 cut(s)	464, 1050
BsiHKAI	GWGCWC	1 cut(s)	81
BsiSI	CCGG	4 cut(s)	286, 535, 662, 716
BsmAI	GTCTC	1 cut(s)	211
BsmI	GAATGC	1 cut(s)	536
BsnI	GGCC	2 cut(s)	464, 1050
Bsp119I	TTCGAA	1 cut(s)	544
Bsp1286I	GDGCHC	2 cut(s)	81, 484
Bsp143I	GATC	5 cut(s)	166, 619, 664, 802, 828
BspACI	CCGC	1 cut(s)	263
BspANI	GGCC	2 cut(s)	464, 1050
BspCNI	CTCAG	3 cut(s)	120, 710, 721
BspLI	GGNNCC	3 cut(s)	25, 621, 756
BspPI	GGATC	4 cut(s)	614, 627, 672, 836
BspQI	GCTCTTC	1 cut(s)	502
BspT104I	TTCGAA	1 cut(s)	544
BsrDI	GCAATG	3 cut(s)	366, 812, 895
BsrFI	RCCGGY	1 cut(s)	715
BssAI	RCCGGY	1 cut(s)	715
BssMI	GATC	5 cut(s)	166, 619, 664, 802, 828
Bst2UI	CCWGG	2 cut(s)	97, 809
Bst4CI	ACNGT	5 cut(s)	23, 124, 459, 748, 943
Bst6I	CTCTTC	2 cut(s)	498, 502
BstAPI	GCANNNNNTGC	1 cut(s)	1024
BstBAI	YACGTR	1 cut(s)	88
BstBI	TTCGAA	1 cut(s)	544
BstC8I	GCNNGC	2 cut(s)	1025, 1052
BstDEI	CTNAG	3 cut(s)	107, 697, 729
BstF5I	GGATG	2 cut(s)	294, 615
BstHHI	GCGC	2 cut(s)	441, 1011
BstKTI	GATC	5 cut(s)	169, 622, 667, 805, 831
BstMAI	GTCTC	1 cut(s)	211
BstMBI	GATC	5 cut(s)	166, 619, 664, 802, 828
BstMWI	GCNNNNNNNGC	5 cut(s)	461, 968, 1015, 1024, 1047
BstNI	CCWGG	2 cut(s)	97, 809
BstNSI	RCATGY	3 cut(s)	74, 692, 1027
BstSCI	CCNGG	3 cut(s)	95, 534, 807
BstSLI	GKGCMC	1 cut(s)	484
BstV1I	GCAGC	4 cut(s)	358, 423, 971, 975
BstX2I	RGATCY	3 cut(s)	619, 664, 828
BstYI	RGATCY	3 cut(s)	619, 664, 828
BsuRI	GGCC	2 cut(s)	464, 1050
BtsCI	GGATG	2 cut(s)	294, 615
BtsIMutI	CAGTG	1 cut(s)	575
Cac8I	GCNNGC	2 cut(s)	1025, 1052
CfoI	GCGC	2 cut(s)	441, 1011
Cfr10I	RCCGGY	1 cut(s)	715
Cfr13I	GGNCC	1 cut(s)	755
CseI	GACGC	1 cut(s)	1023
Csp6I	GTAC	2 cut(s)	427, 678
CviAII	CATG	5 cut(s)	71, 409, 689, 992, 1024
CviQI	GTAC	2 cut(s)	427, 678
DdeI	CTNAG	3 cut(s)	107, 697, 729
DpnI	GATC	5 cut(s)	168, 621, 666, 804, 830
DpnII	GATC	5 cut(s)	166, 619, 664, 802, 828
Eam1104I	CTCTTC	2 cut(s)	498, 502
EarI	CTCTTC	2 cut(s)	498, 502
Eco32I	GATATC	1 cut(s)	998
Eco47I	GGWCC	1 cut(s)	755
Eco57I	CTGAAG	1 cut(s)	475
EcoO109I	RGGNCCY	1 cut(s)	755
EcoRII	CCWGG	2 cut(s)	95, 807
EcoRV	GATATC	1 cut(s)	998
EcoT22I	ATGCAT	1 cut(s)	615
FaeI	CATG	5 cut(s)	74, 412, 692, 995, 1027
FalI	AAGNNNNNCTT	1 cut(s)	1038
FatI	CATG	5 cut(s)	70, 408, 688, 991, 1023
FauNDI	CATATG	1 cut(s)	842
FbaI	TGATCA	1 cut(s)	802
FblI	GTMKAC	1 cut(s)	186
Fnu4HI	GCNGC	4 cut(s)	372, 437, 960, 989
FokI	GGATG	2 cut(s)	301, 622
Fsp4HI	GCNGC	4 cut(s)	372, 437, 960, 989
FspBI	CTAG	5 cut(s)	200, 675, 818, 980, 1060
FspI	TGCGCA	1 cut(s)	440
GlaI	GCGC	2 cut(s)	440, 1010
GluI	GCNGC	4 cut(s)	372, 437, 960, 989
GsaI	CCCAGC	1 cut(s)	65
HaeIII	GGCC	2 cut(s)	464, 1050
HapII	CCGG	4 cut(s)	286, 535, 662, 716
HgaI	GACGC	1 cut(s)	1023
HhaI	GCGC	2 cut(s)	441, 1011
Hin1II	CATG	5 cut(s)	74, 412, 692, 995, 1027
Hin6I	GCGC	2 cut(s)	439, 1009
HinP1I	GCGC	2 cut(s)	439, 1009
HinfI	GANTC	2 cut(s)	133, 926
HpaII	CCGG	4 cut(s)	286, 535, 662, 716
HphI	GGTGA	7 cut(s)	61, 77, 296, 572, 651, 752, 797
Hpy166II	GTNNAC	4 cut(s)	68, 187, 363, 427
Hpy188I	TCNGA	4 cut(s)	312, 502, 700, 730
Hpy188III	TCNNGA	7 cut(s)	164, 172, 200, 758, 866, 905, 1004
Hpy8I	GTNNAC	4 cut(s)	68, 187, 363, 427
HpyAV	CCTTC	2 cut(s)	46, 206
HpyCH4III	ACNGT	5 cut(s)	23, 124, 459, 748, 943
HpyCH4IV	ACGT	1 cut(s)	87
HpyCH4V	TGCA	6 cut(s)	412, 455, 613, 840, 991, 1027
HpyF10VI	GCNNNNNNNGC	5 cut(s)	461, 968, 1015, 1024, 1047
HpyF3I	CTNAG	3 cut(s)	107, 697, 729
HpySE526I	ACGT	1 cut(s)	87
Hsp92II	CATG	5 cut(s)	74, 412, 692, 995, 1027
HspAI	GCGC	2 cut(s)	439, 1009
Ksp22I	TGATCA	1 cut(s)	802
Kzo9I	GATC	5 cut(s)	166, 619, 664, 802, 828
LguI	GCTCTTC	1 cut(s)	502
LmnI	GCTCC	1 cut(s)	247
Lsp1109I	GCAGC	4 cut(s)	358, 423, 971, 975
LweI	GCATC	2 cut(s)	442, 600
MaeI	CTAG	5 cut(s)	200, 675, 818, 980, 1060
MaeII	ACGT	1 cut(s)	87
MaeIII	GTNAC	2 cut(s)	124, 281
MalI	GATC	5 cut(s)	168, 621, 666, 804, 830
MboI	GATC	5 cut(s)	166, 619, 664, 802, 828
MboII	GAAGA	8 cut(s)	236, 278, 489, 515, 580, 656, 905, 992
MfeI	CAATTG	1 cut(s)	212
MflI	RGATCY	3 cut(s)	619, 664, 828
MhlI	GDGCHC	2 cut(s)	81, 484
MluCI	AATT	8 cut(s)	115, 212, 378, 394, 431, 518, 797, 900
MmeI	TCCRAC	1 cut(s)	334
MnlI	CCTC	5 cut(s)	37, 475, 598, 786, 814
Mph1103I	ATGCAT	1 cut(s)	615
MseI	TTAA	4 cut(s)	119, 237, 635, 894
MspI	CCGG	4 cut(s)	286, 535, 662, 716
MspR9I	CCNGG	3 cut(s)	97, 536, 809
MunI	CAATTG	1 cut(s)	212
Mva1269I	GAATGC	1 cut(s)	536
MvaI	CCWGG	2 cut(s)	97, 809
MwoI	GCNNNNNNNGC	5 cut(s)	461, 968, 1015, 1024, 1047
NciI	CCSGG	1 cut(s)	536
NdeI	CATATG	1 cut(s)	842
NdeII	GATC	5 cut(s)	166, 619, 664, 802, 828
NlaIII	CATG	5 cut(s)	74, 412, 692, 995, 1027
NlaIV	GGNNCC	3 cut(s)	25, 621, 756
NmeAIII	GCCGAG	1 cut(s)	100
NsbI	TGCGCA	1 cut(s)	440
NsiI	ATGCAT	1 cut(s)	615
NspI	RCATGY	3 cut(s)	74, 692, 1027
NspV	TTCGAA	1 cut(s)	544
PaeI	GCATGC	1 cut(s)	1027
PciSI	GCTCTTC	1 cut(s)	502
PctI	GAATGC	1 cut(s)	536
PfeI	GAWTC	2 cut(s)	133, 926
PflFI	GACNNNGTC	1 cut(s)	41
PkrI	GCNGC	4 cut(s)	373, 438, 961, 990
Ppu21I	YACGTR	1 cut(s)	88
PpuMI	RGGWCCY	1 cut(s)	755
Psp5II	RGGWCCY	1 cut(s)	755
Psp6I	CCWGG	2 cut(s)	95, 807
PspFI	CCCAGC	1 cut(s)	61
PspGI	CCWGG	2 cut(s)	95, 807
PspN4I	GGNNCC	3 cut(s)	25, 621, 756
PspPI	GGNCC	1 cut(s)	755
PspPPI	RGGWCCY	1 cut(s)	755
PsuI	RGATCY	3 cut(s)	619, 664, 828
PsyI	GACNNNGTC	1 cut(s)	41
RsaI	GTAC	2 cut(s)	428, 679
RsaNI	GTAC	2 cut(s)	427, 678
SapI	GCTCTTC	1 cut(s)	502
SaqAI	TTAA	4 cut(s)	119, 237, 635, 894
SatI	GCNGC	4 cut(s)	372, 437, 960, 989
Sau3AI	GATC	5 cut(s)	166, 619, 664, 802, 828
Sau96I	GGNCC	1 cut(s)	755
ScrFI	CCNGG	3 cut(s)	97, 536, 809
SduI	GDGCHC	2 cut(s)	81, 484
SfaNI	GCATC	2 cut(s)	442, 600
SfuI	TTCGAA	1 cut(s)	544
SinI	GGWCC	1 cut(s)	755
SmlI	CTYRAG	2 cut(s)	170, 1004
SmoI	CTYRAG	2 cut(s)	170, 1004
SpeI	ACTAGT	1 cut(s)	674
SphI	GCATGC	1 cut(s)	1027
Sse9I	AATT	8 cut(s)	115, 212, 378, 394, 431, 518, 797, 900
SsiI	CCGC	1 cut(s)	263
SspMI	CTAG	5 cut(s)	200, 675, 818, 980, 1060
StyD4I	CCNGG	3 cut(s)	95, 534, 807
TaaI	ACNGT	5 cut(s)	23, 124, 459, 748, 943
TaiI	ACGT	1 cut(s)	90
TaqI	TCGA	1 cut(s)	544
TasI	AATT	8 cut(s)	115, 212, 378, 394, 431, 518, 797, 900
TfiI	GAWTC	2 cut(s)	133, 926
Tru1I	TTAA	4 cut(s)	119, 237, 635, 894
Tru9I	TTAA	4 cut(s)	119, 237, 635, 894
TscAI	CASTG	1 cut(s)	582
TseI	GCWGC	4 cut(s)	371, 436, 959, 988
TspDTI	ATGAA	1 cut(s)	657
TspRI	CASTG	1 cut(s)	582
Tth111I	GACNNNGTC	1 cut(s)	41
VpaK11BI	GGWCC	1 cut(s)	755
XapI	RAATTY	4 cut(s)	115, 378, 518, 797
XbaI	TCTAGA	1 cut(s)	199
XceI	RCATGY	3 cut(s)	74, 692, 1027
XmiI	GTMKAC	1 cut(s)	186
XspI	CTAG	5 cut(s)	200, 675, 818, 980, 1060
Zsp2I	ATGCAT	1 cut(s)	615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.