FvH4_3g44990

Protein of unknown function, DUF538

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0002071
Physical Location & Seq
Forward (+)
37468087 .. 37473131
5045 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g44990.t1

Sequence Viewer

Length: 525 bp
ATGGCCTCATCCACCACCCAATTCTCACTCTACCTTCTTCTCCTAACCCTCTTCTCAGCAACCCAATCATCCCAATCCCTCAGAGACCTCAAACCCAATCCCAACCATCCATCCACCTCACTCCAATCAATCACAGACGTCCATGACCTCCTCCCCAAGTACGGCCTCCCAAGGGGTCTCTTACCCGACAACGTAAGATCCTACACTCTCTCCGATGACGGAACTTTCGAGATCTATCTCGAAAGCCCTTGTTATGTCCACTTTGACGAGCTGGTTTACTACAACACCACCATCAAGGGAAAGTTGAGTTTCGGCTCTGTTTCCGATGTGTCGGGGATTCAAGCCAAGAAGCTGTTTATCTGGGTTTCCGTGACGGGGATGCATATGGATGAAGGTTCTGATTCTGTTGAGTTTTACGTTGGTGCTTTGTCGGAGAAACTGCCGGCTAAACAGTTCGAGGATGTTCCTGTTTGTAAGACCAAGGCTTGCCGAGGAGGAGCTGGAGCTGGCATTGAGTCAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF538

Protein Analysis

175

Amino Acids

19.04

Weight (kDa)

5.27

Isoelectric Point (pI)

43.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF538 PF04398 47 - 153 8.2e-32 Protein of unknown function, DUF538
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 141
AclWI GGATC 1 cut(s) 192
AcyI GRCGYC 1 cut(s) 138
AfaI GTAC 1 cut(s) 161
AfiI CCNNNNNNNGG 3 cut(s) 161, 172, 375
AgsI TTSAA 1 cut(s) 341
AluBI AGCT 4 cut(s) 271, 352, 500, 506
AluI AGCT 4 cut(s) 271, 352, 500, 506
Alw26I GTCTC 2 cut(s) 78, 182
AlwI GGATC 1 cut(s) 192
AoxI GGCC 2 cut(s) 3, 163
ArsI GACNNNNNNTTYG 2 cut(s) 209, 241
BccI CCATC 3 cut(s) 114, 118, 299
BceAI ACGGC 1 cut(s) 178
BcoDI GTCTC 2 cut(s) 78, 182
BglII AGATCT 1 cut(s) 231
BmsI GCATC 1 cut(s) 369
BpmI CTGGAG 1 cut(s) 522
BsaHI GRCGYC 1 cut(s) 138
BsaI GGTCTC 2 cut(s) 78, 182
BsaJI CCNNGG 3 cut(s) 170, 480, 490
BsaXI ACNNNNNCTCC 2 cut(s) 194, 224
Bsc4I CCNNNNNNNGG 3 cut(s) 161, 172, 375
Bse118I RCCGGY 1 cut(s) 442
BseDI CCNNGG 3 cut(s) 170, 480, 490
BseGI GGATG 7 cut(s) 8, 68, 106, 110, 384, 394, 466
BseLI CCNNNNNNNGG 3 cut(s) 161, 172, 375
BseMII CTCAG 2 cut(s) 69, 94
BseRI GAGGAG 3 cut(s) 140, 507, 510
BshFI GGCC 2 cut(s) 5, 165
BsiSI CCGG 1 cut(s) 443
BslI CCNNNNNNNGG 3 cut(s) 161, 172, 375
BsmAI GTCTC 2 cut(s) 78, 182
BsnI GGCC 2 cut(s) 5, 165
Bso31I GGTCTC 2 cut(s) 78, 182
Bsp143I GATC 2 cut(s) 197, 231
BspANI GGCC 2 cut(s) 5, 165
BspCNI CTCAG 2 cut(s) 68, 93
BspPI GGATC 1 cut(s) 192
BspTNI GGTCTC 2 cut(s) 78, 182
BsrFI RCCGGY 1 cut(s) 442
BssAI RCCGGY 1 cut(s) 442
BssECI CCNNGG 3 cut(s) 170, 480, 490
BssMI GATC 2 cut(s) 197, 231
BssNI GRCGYC 1 cut(s) 138
BssT1I CCWWGG 2 cut(s) 170, 480
Bst4CI ACNGT 1 cut(s) 453
Bst6I CTCTTC 1 cut(s) 56
BstACI GRCGYC 1 cut(s) 138
BstC8I GCNNGC 3 cut(s) 444, 487, 508
BstDEI CTNAG 2 cut(s) 55, 80
BstF5I GGATG 7 cut(s) 8, 68, 106, 110, 384, 394, 466
BstKTI GATC 2 cut(s) 200, 234
BstMAI GTCTC 2 cut(s) 78, 182
BstMBI GATC 2 cut(s) 197, 231
BstX2I RGATCY 2 cut(s) 197, 231
BstYI RGATCY 2 cut(s) 197, 231
BsuRI GGCC 2 cut(s) 5, 165
BtsCI GGATG 7 cut(s) 8, 68, 106, 110, 384, 394, 466
Cac8I GCNNGC 3 cut(s) 444, 487, 508
Cfr10I RCCGGY 1 cut(s) 442
Csp6I GTAC 1 cut(s) 160
CviAII CATG 1 cut(s) 143
CviQI GTAC 1 cut(s) 160
DdeI CTNAG 2 cut(s) 55, 80
DpnI GATC 2 cut(s) 199, 233
DpnII GATC 2 cut(s) 197, 231
Eam1104I CTCTTC 1 cut(s) 56
EarI CTCTTC 1 cut(s) 56
Eco130I CCWWGG 2 cut(s) 170, 480
Eco31I GGTCTC 2 cut(s) 78, 182
EcoT14I CCWWGG 2 cut(s) 170, 480
EcoT22I ATGCAT 1 cut(s) 384
ErhI CCWWGG 2 cut(s) 170, 480
FaeI CATG 1 cut(s) 146
FaiI YATR 5 cut(s) 144, 255, 384, 386, 523
FatI CATG 1 cut(s) 142
FauNDI CATATG 1 cut(s) 384
FokI GGATG 6 cut(s) 55, 93, 97, 391, 401, 473
GsuI CTGGAG 1 cut(s) 522
HaeIII GGCC 2 cut(s) 5, 165
HapII CCGG 1 cut(s) 443
Hin1I GRCGYC 1 cut(s) 138
Hin1II CATG 1 cut(s) 146
HinfI GANTC 3 cut(s) 337, 401, 515
HpaII CCGG 1 cut(s) 443
Hpy166II GTNNAC 2 cut(s) 259, 277
Hpy188I TCNGA 5 cut(s) 83, 214, 325, 400, 433
Hpy188III TCNNGA 2 cut(s) 229, 239
Hpy8I GTNNAC 2 cut(s) 259, 277
HpyAV CCTTC 2 cut(s) 44, 386
HpyCH4III ACNGT 1 cut(s) 453
HpyCH4IV ACGT 3 cut(s) 138, 192, 417
HpyCH4V TGCA 1 cut(s) 382
HpyF3I CTNAG 2 cut(s) 55, 80
HpySE526I ACGT 3 cut(s) 138, 192, 417
Hsp92I GRCGYC 1 cut(s) 138
Hsp92II CATG 1 cut(s) 146
KroI GCCGGC 1 cut(s) 442
KroNI GCCGGC 1 cut(s) 444
Kzo9I GATC 2 cut(s) 197, 231
LmnI GCTCC 2 cut(s) 497, 503
LpnPI CCDG 6 cut(s) 257, 346, 456, 480, 486, 492
LweI GCATC 1 cut(s) 369
MaeII ACGT 3 cut(s) 138, 192, 417
MaeIII GTNAC 1 cut(s) 370
MalI GATC 2 cut(s) 199, 233
MboI GATC 2 cut(s) 197, 231
MboII GAAGA 2 cut(s) 29, 43
MflI RGATCY 2 cut(s) 197, 231
MluCI AATT 1 cut(s) 20
MlyI GAGTC 1 cut(s) 524
MmeI TCCRAC 1 cut(s) 411
Mph1103I ATGCAT 1 cut(s) 384
MroNI GCCGGC 1 cut(s) 442
MslI CAYNNNNRTG 1 cut(s) 387
MspI CCGG 1 cut(s) 443
NaeI GCCGGC 1 cut(s) 444
NdeI CATATG 1 cut(s) 384
NdeII GATC 2 cut(s) 197, 231
NgoMIV GCCGGC 1 cut(s) 442
NlaIII CATG 1 cut(s) 146
NmeAIII GCCGAG 1 cut(s) 515
NmuCI GTSAC 1 cut(s) 370
NsiI ATGCAT 1 cut(s) 384
PcsI WCGNNNNNNNCGW 1 cut(s) 225
PdiI GCCGGC 1 cut(s) 444
PfeI GAWTC 2 cut(s) 337, 401
PleI GAGTC 1 cut(s) 523
PpsI GAGTC 1 cut(s) 523
PsuI RGATCY 2 cut(s) 197, 231
RsaI GTAC 1 cut(s) 161
RsaNI GTAC 1 cut(s) 160
RseI CAYNNNNRTG 1 cut(s) 387
Sau3AI GATC 2 cut(s) 197, 231
SchI GAGTC 1 cut(s) 524
SfaNI GCATC 1 cut(s) 369
SmiMI CAYNNNNRTG 1 cut(s) 387
Sse9I AATT 1 cut(s) 20
StyI CCWWGG 2 cut(s) 170, 480
TaaI ACNGT 1 cut(s) 453
TaiI ACGT 3 cut(s) 141, 195, 420
TaqI TCGA 3 cut(s) 228, 240, 456
TasI AATT 1 cut(s) 20
TfiI GAWTC 2 cut(s) 337, 401
TseFI GTSAC 1 cut(s) 370
Tsp45I GTSAC 1 cut(s) 370
TspDTI ATGAA 1 cut(s) 405
TspGWI ACGGA 2 cut(s) 234, 358
ZraI GACGTC 1 cut(s) 139
Zsp2I ATGCAT 1 cut(s) 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.