Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002723.1

Orthogroup ID

OG0002071

Physical Location & Seq

Genomic Coordinates Reverse (-)

131088 .. 132332

Gene Structure 1245 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002723.1_g000041.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

atgtcgccgatttgtagccgagtgaagaggtcccgaataaagaagatgagattctatttatccgacccggaactcggatgtgataaaatgatggaggaacgcggcggatctgagcagcaagtcgaggtcctggagttggttggtgagggacgtggcagcgctacagagtggagaggaggttgggctggagagtggagaagaggggattctcggcgacggagaggcctcaaacccaacctcaaccgtccatccacctcgctccaatcaatcacagacgtccatgacctcctccccaagtacggcctcccaaggggtctgttacccgacaacgtaaggtcctacactctctccgacaatggaaccttcgagatctatctcgagaacccatgttatgttcactttgatcagttggtgtactacaacaagaacattaaagggaagctgagtttcggctctgtttccaatgtgtcggggattcaagccaagaagctattttatttgggttaccgtgacggggatgcatatggaacaagggtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF538

Protein Analysis

179

Amino Acids

20.41

Weight (kDa)

9.46

Isoelectric Point (pI)

53.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55265
fragaria_vesca	FvH4_3g44990 FvH4_3g45000
malus_domestica	MD03G1007700.v1.1 MD11G1010900.v1.1
prunus_persica	Prupe.6G009400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0081761 RchiOBHm_Chr5g0081931 RchiOBHm_Chr5g0081981 RchiOBHm_Chr5g0082001 RchiOBHm_Chr5g0082141 RchiOBHm_Chr5g0082171 RchiOBHm_Chr5g0082211 RchiOBHm_Chr5g0082231 RchiOBHm_Chr5g0082391 RchiOBHm_Chr5g0082501 RchiOBHm_Chr5g0082531 RchiOBHm_Chr5g0082751 RchiOBHm_Chr5g0082781
rosa_multiflora	Rmu_sc0000303.1_g000015 Rmu_sc0001381.1_g000025 Rmu_sc0001687.1_g000005 Rmu_sc0001687.1_g000012 Rmu_sc0001687.1_g000036 Rmu_sc0002723.1_g000041 Rmu_sc0006948.1_g000007
rosa_roxburghii	Rroxscaffold_1G00001680 Rroxscaffold_1G00001850
rosa_rugosa	Rorug03G0305700.1 Rorug05G0478100 Rorug05G0478700 Rorug05G0479300 Rorug05G0479500
rosa_samantha	Rh5BG554600 Rh5BG556100 Rh5BG556700 Rh5DG564300 Rh5DG564600 Rh5DG565400 Rh5DG565500
rosa_wichuraiana	Rw0G009110 Rw0G019550 Rw5G049440 Rw5G049550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	279
AccII	CGCG	1 cut(s)	102
AciI	CCGC	2 cut(s)	102, 105
AclWI	GGATC	1 cut(s)	115
AcyI	GRCGYC	1 cut(s)	276
AfaI	GTAC	2 cut(s)	299, 416
AfeI	AGCGCT	1 cut(s)	160
AfiI	CCNNNNNNNGG	5 cut(s)	74, 136, 299, 310, 514
AgsI	TTSAA	1 cut(s)	479
AjiI	CACGTC	1 cut(s)	152
AjnI	CCWGG	1 cut(s)	129
AluBI	AGCT	2 cut(s)	442, 490
AluI	AGCT	2 cut(s)	442, 490
AlwI	GGATC	1 cut(s)	115
Ama87I	CYCGRG	1 cut(s)	377
Aor51HI	AGCGCT	1 cut(s)	160
AoxI	GGCC	2 cut(s)	223, 301
ApeKI	GCWGC	2 cut(s)	115, 156
AspLEI	GCGC	1 cut(s)	161
AspS9I	GGNCC	3 cut(s)	30, 127, 336
AsuC2I	CCSGG	1 cut(s)	68
AsuHPI	GGTGA	1 cut(s)	155
AvaI	CYCGRG	1 cut(s)	377
AvaII	GGWCC	3 cut(s)	30, 127, 336
BbvI	GCAGC	2 cut(s)	127, 168
BccI	CCATC	2 cut(s)	85, 256
BceAI	ACGGC	1 cut(s)	316
BciT130I	CCWGG	1 cut(s)	131
BclI	TGATCA	1 cut(s)	403
BcnI	CCSGG	1 cut(s)	68
BfmI	CTRYAG	1 cut(s)	162
BfoI	RGCGCY	1 cut(s)	162
BglII	AGATCT	1 cut(s)	369
BisI	GCNGC	3 cut(s)	103, 116, 157
BlsI	GCNGC	3 cut(s)	104, 117, 158
Bme1390I	CCNGG	2 cut(s)	68, 131
Bme18I	GGWCC	3 cut(s)	30, 127, 336
BmeT110I	CYCGRG	1 cut(s)	377
BmgBI	CACGTC	1 cut(s)	152
BmgT120I	GGNCC	3 cut(s)	30, 127, 336
BmiI	GGNNCC	2 cut(s)	32, 361
BmrFI	CCNGG	2 cut(s)	68, 131
BmsI	GCATC	1 cut(s)	508
BpmI	CTGGAG	2 cut(s)	152, 207
BpuMI	CCSGG	1 cut(s)	68
BsaHI	GRCGYC	1 cut(s)	276
BsaJI	CCNNGG	1 cut(s)	308
BsaXI	ACNNNNNCTCC	4 cut(s)	163, 193, 332, 362
Bsc4I	CCNNNNNNNGG	5 cut(s)	74, 136, 299, 310, 514
BseBI	CCWGG	1 cut(s)	131
BseDI	CCNNGG	1 cut(s)	308
BseGI	GGATG	3 cut(s)	83, 248, 523
BseLI	CCNNNNNNNGG	5 cut(s)	74, 136, 299, 310, 514
BseMII	CTCAG	2 cut(s)	102, 434
BseRI	GAGGAG	2 cut(s)	189, 278
BseXI	GCAGC	2 cut(s)	127, 168
Bsh1236I	CGCG	1 cut(s)	102
BshFI	GGCC	2 cut(s)	225, 303
BsiHKCI	CYCGRG	1 cut(s)	377
BsiSI	CCGG	1 cut(s)	68
BslFI	GGGAC	2 cut(s)	16, 162
BslI	CCNNNNNNNGG	5 cut(s)	74, 136, 299, 310, 514
BsmFI	GGGAC	2 cut(s)	16, 162
BsnI	GGCC	2 cut(s)	225, 303
BsoBI	CYCGRG	1 cut(s)	377
Bsp143I	GATC	3 cut(s)	107, 369, 403
BspACI	CCGC	2 cut(s)	102, 105
BspANI	GGCC	2 cut(s)	225, 303
BspCNI	CTCAG	2 cut(s)	103, 435
BspFNI	CGCG	1 cut(s)	102
BspLI	GGNNCC	2 cut(s)	32, 361
BspPI	GGATC	1 cut(s)	115
BssECI	CCNNGG	1 cut(s)	308
BssMI	GATC	3 cut(s)	107, 369, 403
BssNI	GRCGYC	1 cut(s)	276
BssT1I	CCWWGG	1 cut(s)	308
Bst2UI	CCWGG	1 cut(s)	131
Bst4CI	ACNGT	2 cut(s)	245, 509
Bst6I	CTCTTC	2 cut(s)	20, 193
BstACI	GRCGYC	1 cut(s)	276
BstDEI	CTNAG	2 cut(s)	111, 443
BstEII	GGTNACC	1 cut(s)	503
BstF5I	GGATG	3 cut(s)	83, 248, 523
BstFNI	CGCG	1 cut(s)	102
BstH2I	RGCGCY	1 cut(s)	162
BstHHI	GCGC	1 cut(s)	161
BstKTI	GATC	3 cut(s)	110, 372, 406
BstMBI	GATC	3 cut(s)	107, 369, 403
BstNI	CCWGG	1 cut(s)	131
BstPI	GGTNACC	1 cut(s)	503
BstSCI	CCNGG	2 cut(s)	66, 129
BstSFI	CTRYAG	1 cut(s)	162
BstUI	CGCG	1 cut(s)	102
BstV1I	GCAGC	2 cut(s)	127, 168
BstX2I	RGATCY	2 cut(s)	107, 369
BstYI	RGATCY	2 cut(s)	107, 369
BsuRI	GGCC	2 cut(s)	225, 303
BtrI	CACGTC	1 cut(s)	152
BtsCI	GGATG	3 cut(s)	83, 248, 523
CfoI	GCGC	1 cut(s)	161
Cfr13I	GGNCC	3 cut(s)	30, 127, 336
Csp6I	GTAC	2 cut(s)	298, 415
CviAII	CATG	2 cut(s)	281, 387
CviJI	RGCY	8 cut(s)	18, 185, 225, 303, 442, 453, 482, 490
CviKI_1	RGCY	8 cut(s)	18, 185, 225, 303, 442, 453, 482, 490
CviQI	GTAC	2 cut(s)	298, 415
DdeI	CTNAG	2 cut(s)	111, 443
DpnI	GATC	3 cut(s)	109, 371, 405
DpnII	GATC	3 cut(s)	107, 369, 403
Eam1104I	CTCTTC	2 cut(s)	20, 193
EarI	CTCTTC	2 cut(s)	20, 193
EciI	GGCGGA	1 cut(s)	120
Eco130I	CCWWGG	1 cut(s)	308
Eco147I	AGGCCT	1 cut(s)	225
Eco47I	GGWCC	3 cut(s)	30, 127, 336
Eco47III	AGCGCT	1 cut(s)	160
Eco88I	CYCGRG	1 cut(s)	377
Eco91I	GGTNACC	1 cut(s)	503
EcoO109I	RGGNCCY	3 cut(s)	30, 127, 336
EcoO65I	GGTNACC	1 cut(s)	503
EcoRII	CCWGG	1 cut(s)	129
EcoT14I	CCWWGG	1 cut(s)	308
EcoT22I	ATGCAT	1 cut(s)	523
ErhI	CCWWGG	1 cut(s)	308
FaeI	CATG	2 cut(s)	284, 390
FaiI	YATR	5 cut(s)	282, 388, 393, 523, 525
FaqI	GGGAC	2 cut(s)	16, 162
FatI	CATG	2 cut(s)	280, 386
FauNDI	CATATG	1 cut(s)	523
FbaI	TGATCA	1 cut(s)	403
Fnu4HI	GCNGC	3 cut(s)	103, 116, 157
FokI	GGATG	3 cut(s)	90, 235, 530
Fsp4HI	GCNGC	3 cut(s)	103, 116, 157
GlaI	GCGC	1 cut(s)	160
GluI	GCNGC	3 cut(s)	103, 116, 157
GsuI	CTGGAG	2 cut(s)	152, 207
HaeII	RGCGCY	1 cut(s)	162
HaeIII	GGCC	2 cut(s)	225, 303
HapII	CCGG	1 cut(s)	68
HhaI	GCGC	1 cut(s)	161
Hin1I	GRCGYC	1 cut(s)	276
Hin1II	CATG	2 cut(s)	284, 390
Hin6I	GCGC	1 cut(s)	159
HinP1I	GCGC	1 cut(s)	159
HinfI	GANTC	3 cut(s)	51, 206, 475
HpaII	CCGG	1 cut(s)	68
HphI	GGTGA	1 cut(s)	155
Hpy166II	GTNNAC	2 cut(s)	397, 415
Hpy188I	TCNGA	5 cut(s)	64, 77, 112, 352, 539
Hpy188III	TCNNGA	4 cut(s)	33, 367, 377, 379
Hpy8I	GTNNAC	2 cut(s)	397, 415
Hpy99I	CGWCG	1 cut(s)	219
HpyAV	CCTTC	1 cut(s)	373
HpyCH4III	ACNGT	2 cut(s)	245, 509
HpyCH4IV	ACGT	3 cut(s)	151, 276, 330
HpyCH4V	TGCA	1 cut(s)	521
HpyF3I	CTNAG	2 cut(s)	111, 443
HpySE526I	ACGT	3 cut(s)	151, 276, 330
Hsp92I	GRCGYC	1 cut(s)	276
Hsp92II	CATG	2 cut(s)	284, 390
HspAI	GCGC	1 cut(s)	159
Ksp22I	TGATCA	1 cut(s)	403
Kzo9I	GATC	3 cut(s)	107, 369, 403
LmnI	GCTCC	1 cut(s)	264
LpnPI	CCDG	4 cut(s)	81, 116, 143, 171
Lsp1109I	GCAGC	2 cut(s)	127, 168
LweI	GCATC	1 cut(s)	508
MaeII	ACGT	3 cut(s)	151, 276, 330
MaeIII	GTNAC	3 cut(s)	318, 503, 509
MalI	GATC	3 cut(s)	109, 371, 405
MboI	GATC	3 cut(s)	107, 369, 403
MboII	GAAGA	3 cut(s)	37, 55, 210
MflI	RGATCY	2 cut(s)	107, 369
MmeI	TCCRAC	2 cut(s)	87, 375
Mph1103I	ATGCAT	1 cut(s)	523
MseI	TTAA	1 cut(s)	432
MspI	CCGG	1 cut(s)	68
MspR9I	CCNGG	2 cut(s)	68, 131
MvaI	CCWGG	1 cut(s)	131
MvnI	CGCG	1 cut(s)	102
NciI	CCSGG	1 cut(s)	68
NdeI	CATATG	1 cut(s)	523
NdeII	GATC	3 cut(s)	107, 369, 403
NlaIII	CATG	2 cut(s)	284, 390
NlaIV	GGNNCC	2 cut(s)	32, 361
NmeAIII	GCCGAG	2 cut(s)	44, 190
NmuCI	GTSAC	1 cut(s)	509
NsiI	ATGCAT	1 cut(s)	523
PaeR7I	CTCGAG	1 cut(s)	377
PceI	AGGCCT	1 cut(s)	225
PfeI	GAWTC	3 cut(s)	51, 206, 475
PfoI	TCCNGGA	1 cut(s)	129
PkrI	GCNGC	3 cut(s)	104, 117, 158
PpuMI	RGGWCCY	3 cut(s)	30, 127, 336
Psp5II	RGGWCCY	3 cut(s)	30, 127, 336
Psp6I	CCWGG	1 cut(s)	129
PspEI	GGTNACC	1 cut(s)	503
PspGI	CCWGG	1 cut(s)	129
PspN4I	GGNNCC	2 cut(s)	32, 361
PspPI	GGNCC	3 cut(s)	30, 127, 336
PspPPI	RGGWCCY	3 cut(s)	30, 127, 336
PsuI	RGATCY	2 cut(s)	107, 369
RsaI	GTAC	2 cut(s)	299, 416
RsaNI	GTAC	2 cut(s)	298, 415
SaqAI	TTAA	1 cut(s)	432
SatI	GCNGC	3 cut(s)	103, 116, 157
Sau3AI	GATC	3 cut(s)	107, 369, 403
Sau96I	GGNCC	3 cut(s)	30, 127, 336
ScrFI	CCNGG	2 cut(s)	68, 131
SfaNI	GCATC	1 cut(s)	508
SfcI	CTRYAG	1 cut(s)	162
Sfr274I	CTCGAG	1 cut(s)	377
SinI	GGWCC	3 cut(s)	30, 127, 336
SlaI	CTCGAG	1 cut(s)	377
SmlI	CTYRAG	1 cut(s)	377
SmoI	CTYRAG	1 cut(s)	377
SseBI	AGGCCT	1 cut(s)	225
SsiI	CCGC	2 cut(s)	102, 105
StuI	AGGCCT	1 cut(s)	225
StyD4I	CCNGG	2 cut(s)	66, 129
StyI	CCWWGG	1 cut(s)	308
TaaI	ACNGT	2 cut(s)	245, 509
TaiI	ACGT	3 cut(s)	154, 279, 333
TaqI	TCGA	3 cut(s)	123, 366, 378
TatI	WGTACW	1 cut(s)	414
TauI	GCSGC	1 cut(s)	105
TfiI	GAWTC	3 cut(s)	51, 206, 475
Tru1I	TTAA	1 cut(s)	432
Tru9I	TTAA	1 cut(s)	432
TseFI	GTSAC	1 cut(s)	509
TseI	GCWGC	2 cut(s)	115, 156
Tsp45I	GTSAC	1 cut(s)	509
TspGWI	ACGGA	1 cut(s)	232
VpaK11BI	GGWCC	3 cut(s)	30, 127, 336
XhoI	CTCGAG	1 cut(s)	377
ZraI	GACGTC	1 cut(s)	277
Zsp2I	ATGCAT	1 cut(s)	523

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.