RchiOBHm_Chr5g0082501

Protein of unknown function, DUF538

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0002071
Physical Location & Seq
Forward (+)
88501196 .. 88503944
2749 bp
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UTR
Exon/CDS
Intron
PRQ35670

Sequence Viewer

Length: 306 bp
ATGATGGAACCTTCGAGATCAAATCTCGAAAACCCATGTTATGTTCACTTTGATCAGTTGGTGTACTACAACAAGAACATCAAAGGGAAGCTGAGTTTCGGCTCTGTTTCCGATGTGTCGGGGATTCAAGCCAAGAAGCTATTTATTTGGGTTTCCGTGACGGGGATGCATATGGAGCAAGGGTCTGATTCAGTTGAGTTTTACGTTGGGGCTCTGTCCGAGAAATTGCCTGCTAAACAGTTCGAGGATATTCCTGTATGTAAGAGCAAGGCTTGCCGAGGAGGAGCTAGTGTTGAGTCAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF538

Protein Analysis

101

Amino Acids

11.19

Weight (kDa)

6.71

Isoelectric Point (pI)

45.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF538 PF04398 9 - 82 6.7e-18 Protein of unknown function, DUF538
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 65
AfiI CCNNNNNNNGG 1 cut(s) 162
AgsI TTSAA 1 cut(s) 128
AluBI AGCT 3 cut(s) 91, 139, 287
AluI AGCT 3 cut(s) 91, 139, 287
BanII GRGCYC 1 cut(s) 214
BclI TGATCA 1 cut(s) 52
BfaI CTAG 1 cut(s) 288
BmiI GGNNCC 1 cut(s) 9
BmsI GCATC 1 cut(s) 156
BsaJI CCNNGG 1 cut(s) 277
BsaXI ACNNNNNCTCC 4 cut(s) 167, 197, 276, 306
Bsc4I CCNNNNNNNGG 1 cut(s) 162
BseDI CCNNGG 1 cut(s) 277
BseGI GGATG 1 cut(s) 171
BseLI CCNNNNNNNGG 1 cut(s) 162
BseMII CTCAG 1 cut(s) 83
BseRI GAGGAG 2 cut(s) 294, 297
BslI CCNNNNNNNGG 1 cut(s) 162
Bsp1286I GDGCHC 1 cut(s) 214
Bsp143I GATC 2 cut(s) 17, 52
BspCNI CTCAG 1 cut(s) 84
BspLI GGNNCC 1 cut(s) 9
BssECI CCNNGG 1 cut(s) 277
BssMI GATC 2 cut(s) 17, 52
Bst4CI ACNGT 1 cut(s) 240
BstAPI GCANNNNNTGC 1 cut(s) 273
BstC8I GCNNGC 2 cut(s) 231, 274
BstDEI CTNAG 1 cut(s) 92
BstF5I GGATG 1 cut(s) 171
BstKTI GATC 2 cut(s) 20, 55
BstMBI GATC 2 cut(s) 17, 52
BstMWI GCNNNNNNNGC 2 cut(s) 175, 273
BtsCI GGATG 1 cut(s) 171
Cac8I GCNNGC 2 cut(s) 231, 274
Csp6I GTAC 1 cut(s) 64
CviAII CATG 1 cut(s) 36
CviJI RGCY 7 cut(s) 91, 102, 131, 139, 212, 272, 287
CviKI_1 RGCY 7 cut(s) 91, 102, 131, 139, 212, 272, 287
CviQI GTAC 1 cut(s) 64
DdeI CTNAG 1 cut(s) 92
DpnI GATC 2 cut(s) 19, 54
DpnII GATC 2 cut(s) 17, 52
Eco24I GRGCYC 1 cut(s) 214
EcoT22I ATGCAT 1 cut(s) 171
EcoT38I GRGCYC 1 cut(s) 214
FaeI CATG 1 cut(s) 39
FaiI YATR 5 cut(s) 37, 42, 171, 173, 259
FatI CATG 1 cut(s) 35
FauNDI CATATG 1 cut(s) 171
FbaI TGATCA 1 cut(s) 52
FokI GGATG 1 cut(s) 178
FriOI GRGCYC 1 cut(s) 214
FspBI CTAG 1 cut(s) 288
Hin1II CATG 1 cut(s) 39
HinfI GANTC 3 cut(s) 124, 188, 296
Hpy166II GTNNAC 2 cut(s) 46, 64
Hpy188I TCNGA 3 cut(s) 112, 187, 220
Hpy188III TCNNGA 2 cut(s) 15, 26
Hpy8I GTNNAC 2 cut(s) 46, 64
HpyAV CCTTC 1 cut(s) 21
HpyCH4III ACNGT 1 cut(s) 240
HpyCH4IV ACGT 1 cut(s) 204
HpyCH4V TGCA 1 cut(s) 169
HpyF10VI GCNNNNNNNGC 2 cut(s) 175, 273
HpyF3I CTNAG 1 cut(s) 92
HpySE526I ACGT 1 cut(s) 204
Hsp92II CATG 1 cut(s) 39
Ksp22I TGATCA 1 cut(s) 52
Kzo9I GATC 2 cut(s) 17, 52
LmnI GCTCC 2 cut(s) 175, 284
LpnPI CCDG 2 cut(s) 243, 267
LweI GCATC 1 cut(s) 156
MaeI CTAG 1 cut(s) 288
MaeII ACGT 1 cut(s) 204
MaeIII GTNAC 1 cut(s) 157
MalI GATC 2 cut(s) 19, 54
MboI GATC 2 cut(s) 17, 52
MhlI GDGCHC 1 cut(s) 214
MluCI AATT 1 cut(s) 224
MlyI GAGTC 1 cut(s) 305
MnlI CCTC 3 cut(s) 238, 272, 275
Mph1103I ATGCAT 1 cut(s) 171
MwoI GCNNNNNNNGC 2 cut(s) 175, 273
NdeI CATATG 1 cut(s) 171
NdeII GATC 2 cut(s) 17, 52
NlaIII CATG 1 cut(s) 39
NlaIV GGNNCC 1 cut(s) 9
NmeAIII GCCGAG 1 cut(s) 302
NmuCI GTSAC 1 cut(s) 157
NsiI ATGCAT 1 cut(s) 171
PfeI GAWTC 2 cut(s) 124, 188
PleI GAGTC 1 cut(s) 304
PpsI GAGTC 1 cut(s) 304
PspN4I GGNNCC 1 cut(s) 9
RsaI GTAC 1 cut(s) 65
RsaNI GTAC 1 cut(s) 64
Sau3AI GATC 2 cut(s) 17, 52
SchI GAGTC 1 cut(s) 305
SduI GDGCHC 1 cut(s) 214
SetI ASST 5 cut(s) 13, 93, 141, 207, 289
SfaNI GCATC 1 cut(s) 156
Sse9I AATT 1 cut(s) 224
SspMI CTAG 1 cut(s) 288
TaaI ACNGT 1 cut(s) 240
TaiI ACGT 1 cut(s) 207
TaqI TCGA 3 cut(s) 14, 27, 243
TasI AATT 1 cut(s) 224
TatI WGTACW 1 cut(s) 63
TfiI GAWTC 2 cut(s) 124, 188
TseFI GTSAC 1 cut(s) 157
Tsp45I GTSAC 1 cut(s) 157
TspGWI ACGGA 1 cut(s) 145
XspI CTAG 1 cut(s) 288
Zsp2I ATGCAT 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.