Rh5BG556700

Protein of unknown function, DUF538

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0002071
Physical Location & Seq
Forward (+)
88675403 .. 88675927
525 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG556700.1

Sequence Viewer

Length: 525 bp
ATGGCCTCATCCATCACCCAAATCTCTCTCTTCCTTCTATTCCTAACTCTCTTCTCAGAAACCCAATTATCTCAATCCCTCAGAGACCTCAAACCCAACCCCAACCCCAACCGTCCATCCACCTCGCTCCAATCAATCACAGACGTCCATGACCTCCTCCCCAAGTACGGCCTCCCAAGGGGTCTGTTACCCGACAACGTAAGATCCTACACTCTCTCCGACGATGGAACCTTCGAGATCTATCTCGAAAACCCGTGTTATGTTCACTTTGATCAGTTGGTATACTACAACAAGAACATCAAAGGGAAGCTGAGTTTCGGCTCTGTTTCCGATGTGTCGGGGATTCAAGCCAAGAAGCTATTTATTTGGGTTTCCGTGACGGGGATGCATATGGAGCAAGGGTCTGATTCAGTTGAGTTTTACGTTGGGGCTCTGTCCGAGAAATTGCCTGCTAAACAGTTCGAGGATGTTCCTGTATGTAAGAGCAAGGCTTGCGGAGGAGGAGCTAGTGTTGAGTCAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF538

Protein Analysis

174

Amino Acids

19.22

Weight (kDa)

5.57

Isoelectric Point (pI)

44.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF538 PF04398 49 - 155 1e-31 Protein of unknown function, DUF538
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 147
AccI GTMKAC 1 cut(s) 282
AciI CCGC 1 cut(s) 495
AclWI GGATC 1 cut(s) 198
AcyI GRCGYC 1 cut(s) 144
AfaI GTAC 1 cut(s) 167
AfiI CCNNNNNNNGG 3 cut(s) 167, 178, 381
AgsI TTSAA 1 cut(s) 347
AluBI AGCT 3 cut(s) 310, 358, 506
AluI AGCT 3 cut(s) 310, 358, 506
Alw26I GTCTC 1 cut(s) 78
AlwI GGATC 1 cut(s) 198
AoxI GGCC 2 cut(s) 3, 169
AsuHPI GGTGA 1 cut(s) 7
BanII GRGCYC 1 cut(s) 433
BccI CCATC 3 cut(s) 20, 124, 218
BceAI ACGGC 1 cut(s) 184
BclI TGATCA 1 cut(s) 271
BcoDI GTCTC 1 cut(s) 78
BfaI CTAG 1 cut(s) 507
BglII AGATCT 1 cut(s) 237
BmiI GGNNCC 1 cut(s) 229
BmsI GCATC 1 cut(s) 375
BsaHI GRCGYC 1 cut(s) 144
BsaI GGTCTC 1 cut(s) 78
BsaJI CCNNGG 1 cut(s) 176
BsaXI ACNNNNNCTCC 6 cut(s) 200, 230, 386, 416, 495, 525
Bsc4I CCNNNNNNNGG 3 cut(s) 167, 178, 381
BseDI CCNNGG 1 cut(s) 176
BseGI GGATG 4 cut(s) 8, 116, 390, 472
BseLI CCNNNNNNNGG 3 cut(s) 167, 178, 381
BseMII CTCAG 3 cut(s) 69, 94, 302
BseRI GAGGAG 3 cut(s) 146, 513, 516
BshFI GGCC 2 cut(s) 5, 171
BslI CCNNNNNNNGG 3 cut(s) 167, 178, 381
BsmAI GTCTC 1 cut(s) 78
BsnI GGCC 2 cut(s) 5, 171
Bso31I GGTCTC 1 cut(s) 78
Bsp1286I GDGCHC 1 cut(s) 433
Bsp143I GATC 3 cut(s) 203, 237, 271
BspACI CCGC 1 cut(s) 495
BspANI GGCC 2 cut(s) 5, 171
BspCNI CTCAG 3 cut(s) 68, 93, 303
BspLI GGNNCC 1 cut(s) 229
BspPI GGATC 1 cut(s) 198
BspTNI GGTCTC 1 cut(s) 78
BssECI CCNNGG 1 cut(s) 176
BssMI GATC 3 cut(s) 203, 237, 271
BssNAI GTATAC 1 cut(s) 283
BssNI GRCGYC 1 cut(s) 144
BssT1I CCWWGG 1 cut(s) 176
Bst1107I GTATAC 1 cut(s) 283
Bst4CI ACNGT 2 cut(s) 113, 459
Bst6I CTCTTC 2 cut(s) 35, 56
BstACI GRCGYC 1 cut(s) 144
BstAPI GCANNNNNTGC 1 cut(s) 492
BstC8I GCNNGC 2 cut(s) 450, 493
BstDEI CTNAG 3 cut(s) 55, 80, 311
BstF5I GGATG 4 cut(s) 8, 116, 390, 472
BstKTI GATC 3 cut(s) 206, 240, 274
BstMAI GTCTC 1 cut(s) 78
BstMBI GATC 3 cut(s) 203, 237, 271
BstMWI GCNNNNNNNGC 2 cut(s) 394, 492
BstX2I RGATCY 2 cut(s) 203, 237
BstYI RGATCY 2 cut(s) 203, 237
BstZ17I GTATAC 1 cut(s) 283
BsuRI GGCC 2 cut(s) 5, 171
BtsCI GGATG 4 cut(s) 8, 116, 390, 472
Cac8I GCNNGC 2 cut(s) 450, 493
Csp6I GTAC 1 cut(s) 166
CviAII CATG 1 cut(s) 149
CviJI RGCY 9 cut(s) 5, 171, 310, 321, 350, 358, 431, 491, 506
CviKI_1 RGCY 9 cut(s) 5, 171, 310, 321, 350, 358, 431, 491, 506
CviQI GTAC 1 cut(s) 166
DdeI CTNAG 3 cut(s) 55, 80, 311
DpnI GATC 3 cut(s) 205, 239, 273
DpnII GATC 3 cut(s) 203, 237, 271
Eam1104I CTCTTC 2 cut(s) 35, 56
EarI CTCTTC 2 cut(s) 35, 56
Eco130I CCWWGG 1 cut(s) 176
Eco24I GRGCYC 1 cut(s) 433
Eco31I GGTCTC 1 cut(s) 78
EcoT14I CCWWGG 1 cut(s) 176
EcoT22I ATGCAT 1 cut(s) 390
EcoT38I GRGCYC 1 cut(s) 433
ErhI CCWWGG 1 cut(s) 176
FaeI CATG 1 cut(s) 152
FaiI YATR 6 cut(s) 150, 261, 283, 390, 392, 478
FatI CATG 1 cut(s) 148
FauNDI CATATG 1 cut(s) 390
FbaI TGATCA 1 cut(s) 271
FblI GTMKAC 1 cut(s) 282
FokI GGATG 3 cut(s) 103, 397, 479
FriOI GRGCYC 1 cut(s) 433
FspBI CTAG 1 cut(s) 507
HaeIII GGCC 2 cut(s) 5, 171
Hin1I GRCGYC 1 cut(s) 144
Hin1II CATG 1 cut(s) 152
HinfI GANTC 3 cut(s) 343, 407, 515
HphI GGTGA 1 cut(s) 7
Hpy166II GTNNAC 2 cut(s) 265, 283
Hpy188I TCNGA 6 cut(s) 58, 83, 220, 331, 406, 439
Hpy188III TCNNGA 2 cut(s) 235, 245
Hpy8I GTNNAC 2 cut(s) 265, 283
Hpy99I CGWCG 1 cut(s) 224
HpyAV CCTTC 2 cut(s) 44, 241
HpyCH4III ACNGT 2 cut(s) 113, 459
HpyCH4IV ACGT 3 cut(s) 144, 198, 423
HpyCH4V TGCA 1 cut(s) 388
HpyF10VI GCNNNNNNNGC 2 cut(s) 394, 492
HpyF3I CTNAG 3 cut(s) 55, 80, 311
HpySE526I ACGT 3 cut(s) 144, 198, 423
Hsp92I GRCGYC 1 cut(s) 144
Hsp92II CATG 1 cut(s) 152
Ksp22I TGATCA 1 cut(s) 271
Kzo9I GATC 3 cut(s) 203, 237, 271
LmnI GCTCC 3 cut(s) 132, 394, 503
LpnPI CCDG 2 cut(s) 462, 486
LweI GCATC 1 cut(s) 375
MaeI CTAG 1 cut(s) 507
MaeII ACGT 3 cut(s) 144, 198, 423
MaeIII GTNAC 2 cut(s) 186, 376
MalI GATC 3 cut(s) 205, 239, 273
MboI GATC 3 cut(s) 203, 237, 271
MboII GAAGA 2 cut(s) 22, 43
MflI RGATCY 2 cut(s) 203, 237
MhlI GDGCHC 1 cut(s) 433
MluCI AATT 2 cut(s) 65, 443
MlyI GAGTC 1 cut(s) 524
MmeI TCCRAC 1 cut(s) 243
Mph1103I ATGCAT 1 cut(s) 390
MwoI GCNNNNNNNGC 2 cut(s) 394, 492
NdeI CATATG 1 cut(s) 390
NdeII GATC 3 cut(s) 203, 237, 271
NlaIII CATG 1 cut(s) 152
NlaIV GGNNCC 1 cut(s) 229
NmuCI GTSAC 1 cut(s) 376
NsiI ATGCAT 1 cut(s) 390
PfeI GAWTC 2 cut(s) 343, 407
PleI GAGTC 1 cut(s) 523
PpsI GAGTC 1 cut(s) 523
PspN4I GGNNCC 1 cut(s) 229
PsuI RGATCY 2 cut(s) 203, 237
RsaI GTAC 1 cut(s) 167
RsaNI GTAC 1 cut(s) 166
Sau3AI GATC 3 cut(s) 203, 237, 271
SchI GAGTC 1 cut(s) 524
SduI GDGCHC 1 cut(s) 433
SfaNI GCATC 1 cut(s) 375
Sse9I AATT 2 cut(s) 65, 443
SsiI CCGC 1 cut(s) 495
SspMI CTAG 1 cut(s) 507
StyI CCWWGG 1 cut(s) 176
TaaI ACNGT 2 cut(s) 113, 459
TaiI ACGT 3 cut(s) 147, 201, 426
TaqI TCGA 3 cut(s) 234, 246, 462
TasI AATT 2 cut(s) 65, 443
TfiI GAWTC 2 cut(s) 343, 407
TseFI GTSAC 1 cut(s) 376
Tsp45I GTSAC 1 cut(s) 376
TspGWI ACGGA 1 cut(s) 364
XmiI GTMKAC 1 cut(s) 282
XspI CTAG 1 cut(s) 507
ZraI GACGTC 1 cut(s) 145
Zsp2I ATGCAT 1 cut(s) 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.