Rh5BG556100

Protein of unknown function, DUF538

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0002071
Physical Location & Seq
Forward (+)
88496024 .. 88496425
402 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG556100.1

Sequence Viewer

Length: 402 bp
ATGGCCTCATTCATCACCCAAATCTCTCTCTACCTTCTACTCCTATCCCTCTTCTCAGAAACCCAATTATCTCAATCCCTCAGAGACCTCAAACCCAACCCCAACCGCCCATCCACCTCGCTCCAATCAATCACAGACGTCCATGACCTCCTCCCCAAGTACGGCCTCCCAAGGGGTCTGTTACCCGACAACGTAAGATCCTATACTCTCTCTGACGATGGAACCTTCGAGATCCATCTCGAAAACCCATGTTATGTTCACTTTGATCAGTTGGTGTACTACAACAAGAACATCAAAGGGAAGCTGAGTTTCGGCTCTGTTTCCGATGTGTCGGGGATTCAAGCCAAGAAGCTATTTATTTGGGGTTTCCGTGACGGGGATGCATATGGAACAAGGGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF538

Protein Analysis

133

Amino Acids

15.02

Weight (kDa)

6.82

Isoelectric Point (pI)

30.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF538 PF04398 47 - 121 2.8e-22 Protein of unknown function, DUF538
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 141
AciI CCGC 1 cut(s) 106
AclWI GGATC 2 cut(s) 192, 226
AcyI GRCGYC 1 cut(s) 138
AfaI GTAC 2 cut(s) 161, 278
AfiI CCNNNNNNNGG 3 cut(s) 161, 172, 376
AgsI TTSAA 1 cut(s) 341
AluBI AGCT 2 cut(s) 304, 352
AluI AGCT 2 cut(s) 304, 352
Alw26I GTCTC 1 cut(s) 78
AlwI GGATC 2 cut(s) 192, 226
AoxI GGCC 2 cut(s) 3, 163
AsuHPI GGTGA 1 cut(s) 7
BccI CCATC 3 cut(s) 118, 212, 243
BceAI ACGGC 1 cut(s) 178
BclI TGATCA 1 cut(s) 265
BcoDI GTCTC 1 cut(s) 78
BmiI GGNNCC 1 cut(s) 223
BmsI GCATC 1 cut(s) 370
BsaHI GRCGYC 1 cut(s) 138
BsaI GGTCTC 1 cut(s) 78
BsaJI CCNNGG 1 cut(s) 170
Bsc4I CCNNNNNNNGG 3 cut(s) 161, 172, 376
BseDI CCNNGG 1 cut(s) 170
BseGI GGATG 2 cut(s) 110, 385
BseLI CCNNNNNNNGG 3 cut(s) 161, 172, 376
BseMII CTCAG 3 cut(s) 69, 94, 296
BseRI GAGGAG 1 cut(s) 140
BshFI GGCC 2 cut(s) 5, 165
BslI CCNNNNNNNGG 3 cut(s) 161, 172, 376
BsmAI GTCTC 1 cut(s) 78
BsnI GGCC 2 cut(s) 5, 165
Bso31I GGTCTC 1 cut(s) 78
Bsp143I GATC 3 cut(s) 197, 231, 265
BspACI CCGC 1 cut(s) 106
BspANI GGCC 2 cut(s) 5, 165
BspCNI CTCAG 3 cut(s) 68, 93, 297
BspLI GGNNCC 1 cut(s) 223
BspPI GGATC 2 cut(s) 192, 226
BspTNI GGTCTC 1 cut(s) 78
BssECI CCNNGG 1 cut(s) 170
BssMI GATC 3 cut(s) 197, 231, 265
BssNI GRCGYC 1 cut(s) 138
BssT1I CCWWGG 1 cut(s) 170
Bst6I CTCTTC 1 cut(s) 56
BstACI GRCGYC 1 cut(s) 138
BstDEI CTNAG 3 cut(s) 55, 80, 305
BstF5I GGATG 2 cut(s) 110, 385
BstKTI GATC 3 cut(s) 200, 234, 268
BstMAI GTCTC 1 cut(s) 78
BstMBI GATC 3 cut(s) 197, 231, 265
BstX2I RGATCY 2 cut(s) 197, 231
BstYI RGATCY 2 cut(s) 197, 231
BsuRI GGCC 2 cut(s) 5, 165
BtsCI GGATG 2 cut(s) 110, 385
Csp6I GTAC 2 cut(s) 160, 277
CviAII CATG 2 cut(s) 143, 249
CviJI RGCY 6 cut(s) 5, 165, 304, 315, 344, 352
CviKI_1 RGCY 6 cut(s) 5, 165, 304, 315, 344, 352
CviQI GTAC 2 cut(s) 160, 277
DdeI CTNAG 3 cut(s) 55, 80, 305
DpnI GATC 3 cut(s) 199, 233, 267
DpnII GATC 3 cut(s) 197, 231, 265
Eam1104I CTCTTC 1 cut(s) 56
EarI CTCTTC 1 cut(s) 56
Eco130I CCWWGG 1 cut(s) 170
Eco31I GGTCTC 1 cut(s) 78
EcoT14I CCWWGG 1 cut(s) 170
EcoT22I ATGCAT 1 cut(s) 385
ErhI CCWWGG 1 cut(s) 170
FaeI CATG 2 cut(s) 146, 252
FaiI YATR 6 cut(s) 144, 204, 250, 255, 385, 387
FatI CATG 2 cut(s) 142, 248
FauNDI CATATG 1 cut(s) 385
FbaI TGATCA 1 cut(s) 265
FokI GGATG 2 cut(s) 97, 392
HaeIII GGCC 2 cut(s) 5, 165
Hin1I GRCGYC 1 cut(s) 138
Hin1II CATG 2 cut(s) 146, 252
HinfI GANTC 1 cut(s) 337
HphI GGTGA 1 cut(s) 7
Hpy166II GTNNAC 2 cut(s) 259, 277
Hpy188I TCNGA 5 cut(s) 58, 83, 214, 325, 401
Hpy188III TCNNGA 2 cut(s) 229, 239
Hpy8I GTNNAC 2 cut(s) 259, 277
HpyAV CCTTC 2 cut(s) 44, 235
HpyCH4IV ACGT 2 cut(s) 138, 192
HpyCH4V TGCA 1 cut(s) 383
HpyF3I CTNAG 3 cut(s) 55, 80, 305
HpySE526I ACGT 2 cut(s) 138, 192
Hsp92I GRCGYC 1 cut(s) 138
Hsp92II CATG 2 cut(s) 146, 252
Ksp22I TGATCA 1 cut(s) 265
Kzo9I GATC 3 cut(s) 197, 231, 265
LmnI GCTCC 1 cut(s) 126
LweI GCATC 1 cut(s) 370
MaeII ACGT 2 cut(s) 138, 192
MaeIII GTNAC 2 cut(s) 180, 371
MalI GATC 3 cut(s) 199, 233, 267
MboI GATC 3 cut(s) 197, 231, 265
MboII GAAGA 1 cut(s) 43
MflI RGATCY 2 cut(s) 197, 231
MluCI AATT 1 cut(s) 65
MnlI CCTC 8 cut(s) 16, 59, 89, 98, 127, 158, 161, 176
Mph1103I ATGCAT 1 cut(s) 385
NdeI CATATG 1 cut(s) 385
NdeII GATC 3 cut(s) 197, 231, 265
NlaIII CATG 2 cut(s) 146, 252
NlaIV GGNNCC 1 cut(s) 223
NmuCI GTSAC 1 cut(s) 371
NsiI ATGCAT 1 cut(s) 385
PfeI GAWTC 1 cut(s) 337
PspN4I GGNNCC 1 cut(s) 223
PsuI RGATCY 2 cut(s) 197, 231
RsaI GTAC 2 cut(s) 161, 278
RsaNI GTAC 2 cut(s) 160, 277
Sau3AI GATC 3 cut(s) 197, 231, 265
SetI ASST 9 cut(s) 36, 90, 119, 141, 150, 195, 227, 306, 354
SfaNI GCATC 1 cut(s) 370
Sse9I AATT 1 cut(s) 65
SsiI CCGC 1 cut(s) 106
StyI CCWWGG 1 cut(s) 170
TaiI ACGT 2 cut(s) 141, 195
TaqI TCGA 2 cut(s) 228, 240
TasI AATT 1 cut(s) 65
TatI WGTACW 1 cut(s) 276
TfiI GAWTC 1 cut(s) 337
TseFI GTSAC 1 cut(s) 371
Tsp45I GTSAC 1 cut(s) 371
TspGWI ACGGA 1 cut(s) 359
ZraI GACGTC 1 cut(s) 139
Zsp2I ATGCAT 1 cut(s) 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.