RchiOBHm_Chr5g0082781

Protein of unknown function, DUF538

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0002071
Physical Location & Seq
Forward (+)
88644160 .. 88646343
2184 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35697

Sequence Viewer

Length: 522 bp
ATGTTGCCGGAGAAGTTGTTAGCACTAAAATCCAGCCCTTGGAGAAGCTGCAATTGGCCAATCTCCGACGATGGAACCTACACTCTCTCCGACGATGGAACCTTCGAGATCTATCTCGAAAACCCATGTTATGTTCACTTTGATCAGTTGGTGTACTACAGCAAGAACATCAAAGGGAAGCTGAGTTTCGGCTCTGTTTCCGATGTGTCGGGGATTCAAGCCAAGAAGCTATTTATTTGGGTTACCGTGACGGGGATGCATATGGAACTAGGGTCTGATTCAGTTGAGTTTTACGTTGGGGCTCTGTCCGAGAAATTGCCTGCTAAACAGTTCGAGGATATTCCTGTATGTAAGAGCAAGGCTTGCCGAGGAGGAGCTAGTGTTGAGTCAATGTGTGCATATGTTTCTCTCTGTTGCAAGAATTTTATGCTGGTTGCTCTCAAGATGTCTCCACACAAGTGGCCTACAGAAGCAAGCATATGTGCATATGAATTTCTTGTTAGTTGCCACAAAAAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF538

Protein Analysis

173

Amino Acids

19.35

Weight (kDa)

7.51

Isoelectric Point (pI)

43.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF538 PF04398 27 - 112 2.2e-20 Protein of unknown function, DUF538
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 39
AcoI YGGCCR 1 cut(s) 56
AcsI RAATTY 2 cut(s) 421, 491
AfaI GTAC 1 cut(s) 155
AfiI CCNNNNNNNGG 2 cut(s) 39, 252
AgsI TTSAA 1 cut(s) 218
AjuI GAANNNNNNNTTGG 2 cut(s) 37, 69
AleI CACNNNNGTG 1 cut(s) 457
AluBI AGCT 4 cut(s) 48, 181, 229, 377
AluI AGCT 4 cut(s) 48, 181, 229, 377
Alw26I GTCTC 1 cut(s) 453
AoxI GGCC 2 cut(s) 56, 461
ApeKI GCWGC 1 cut(s) 48
ApoI RAATTY 2 cut(s) 421, 491
BalI TGGCCA 1 cut(s) 58
BanII GRGCYC 1 cut(s) 304
BbvI GCAGC 1 cut(s) 35
BccI CCATC 2 cut(s) 65, 89
BclI TGATCA 1 cut(s) 142
BcoDI GTCTC 1 cut(s) 453
BfaI CTAG 2 cut(s) 269, 378
BfmI CTRYAG 2 cut(s) 157, 465
BglII AGATCT 1 cut(s) 108
BisI GCNGC 1 cut(s) 49
BlsI GCNGC 1 cut(s) 50
BmiI GGNNCC 2 cut(s) 76, 100
BmsI GCATC 1 cut(s) 246
BpuEI CTTGAG 1 cut(s) 425
BsaJI CCNNGG 2 cut(s) 38, 367
BsaXI ACNNNNNCTCC 5 cut(s) 32, 71, 101, 366, 396
Bsc4I CCNNNNNNNGG 2 cut(s) 39, 252
BseDI CCNNGG 2 cut(s) 38, 367
BseGI GGATG 1 cut(s) 261
BseLI CCNNNNNNNGG 2 cut(s) 39, 252
BseMII CTCAG 1 cut(s) 173
BseRI GAGGAG 2 cut(s) 384, 387
BseXI GCAGC 1 cut(s) 35
BshFI GGCC 2 cut(s) 58, 463
BsiSI CCGG 1 cut(s) 8
BslI CCNNNNNNNGG 2 cut(s) 39, 252
BsmAI GTCTC 1 cut(s) 453
BsnI GGCC 2 cut(s) 58, 463
Bsp1286I GDGCHC 1 cut(s) 304
Bsp143I GATC 2 cut(s) 108, 142
BspANI GGCC 2 cut(s) 58, 463
BspCNI CTCAG 1 cut(s) 174
BspLI GGNNCC 2 cut(s) 76, 100
BssECI CCNNGG 2 cut(s) 38, 367
BssMI GATC 2 cut(s) 108, 142
BssT1I CCWWGG 1 cut(s) 38
Bst4CI ACNGT 2 cut(s) 247, 330
BstAPI GCANNNNNTGC 1 cut(s) 363
BstC8I GCNNGC 3 cut(s) 321, 364, 475
BstDEI CTNAG 1 cut(s) 182
BstEII GGTNACC 1 cut(s) 241
BstF5I GGATG 1 cut(s) 261
BstKTI GATC 2 cut(s) 111, 145
BstMAI GTCTC 1 cut(s) 453
BstMBI GATC 2 cut(s) 108, 142
BstMWI GCNNNNNNNGC 1 cut(s) 363
BstPI GGTNACC 1 cut(s) 241
BstSFI CTRYAG 2 cut(s) 157, 465
BstV1I GCAGC 1 cut(s) 35
BstX2I RGATCY 1 cut(s) 108
BstXI CCANNNNNNTGG 1 cut(s) 459
BstYI RGATCY 1 cut(s) 108
BsuRI GGCC 2 cut(s) 58, 463
BtsCI GGATG 1 cut(s) 261
Cac8I GCNNGC 3 cut(s) 321, 364, 475
Csp6I GTAC 1 cut(s) 154
CviAII CATG 1 cut(s) 126
CviQI GTAC 1 cut(s) 154
DdeI CTNAG 1 cut(s) 182
DpnI GATC 2 cut(s) 110, 144
DpnII GATC 2 cut(s) 108, 142
EaeI YGGCCR 1 cut(s) 56
Eco130I CCWWGG 1 cut(s) 38
Eco24I GRGCYC 1 cut(s) 304
Eco91I GGTNACC 1 cut(s) 241
EcoO65I GGTNACC 1 cut(s) 241
EcoT14I CCWWGG 1 cut(s) 38
EcoT22I ATGCAT 1 cut(s) 261
EcoT38I GRGCYC 1 cut(s) 304
ErhI CCWWGG 1 cut(s) 38
FaeI CATG 1 cut(s) 129
FatI CATG 1 cut(s) 125
FauNDI CATATG 4 cut(s) 261, 400, 479, 487
FbaI TGATCA 1 cut(s) 142
Fnu4HI GCNGC 1 cut(s) 49
FokI GGATG 1 cut(s) 268
FriOI GRGCYC 1 cut(s) 304
Fsp4HI GCNGC 1 cut(s) 49
FspBI CTAG 2 cut(s) 269, 378
GluI GCNGC 1 cut(s) 49
HaeIII GGCC 2 cut(s) 58, 463
HapII CCGG 1 cut(s) 8
Hin1II CATG 1 cut(s) 129
HinfI GANTC 3 cut(s) 214, 278, 386
HpaII CCGG 1 cut(s) 8
Hpy166II GTNNAC 2 cut(s) 136, 154
Hpy188I TCNGA 5 cut(s) 67, 91, 202, 277, 310
Hpy188III TCNNGA 3 cut(s) 106, 116, 442
Hpy8I GTNNAC 2 cut(s) 136, 154
Hpy99I CGWCG 2 cut(s) 71, 95
HpyAV CCTTC 1 cut(s) 112
HpyCH4III ACNGT 2 cut(s) 247, 330
HpyCH4IV ACGT 1 cut(s) 294
HpyCH4V TGCA 5 cut(s) 51, 259, 398, 417, 485
HpyF10VI GCNNNNNNNGC 1 cut(s) 363
HpyF3I CTNAG 1 cut(s) 182
HpySE526I ACGT 1 cut(s) 294
Hsp92II CATG 1 cut(s) 129
Ksp22I TGATCA 1 cut(s) 142
Kzo9I GATC 2 cut(s) 108, 142
LmnI GCTCC 1 cut(s) 374
LpnPI CCDG 5 cut(s) 21, 46, 333, 357, 416
Lsp1109I GCAGC 1 cut(s) 35
LweI GCATC 1 cut(s) 246
MaeI CTAG 2 cut(s) 269, 378
MaeII ACGT 1 cut(s) 294
MaeIII GTNAC 2 cut(s) 241, 247
MalI GATC 2 cut(s) 110, 144
MboI GATC 2 cut(s) 108, 142
MfeI CAATTG 1 cut(s) 52
MflI RGATCY 1 cut(s) 108
MhlI GDGCHC 1 cut(s) 304
MlsI TGGCCA 1 cut(s) 58
MluCI AATT 4 cut(s) 52, 314, 421, 491
MluNI TGGCCA 1 cut(s) 58
MlyI GAGTC 1 cut(s) 395
MmeI TCCRAC 2 cut(s) 90, 114
MnlI CCTC 3 cut(s) 328, 362, 365
Mox20I TGGCCA 1 cut(s) 58
Mph1103I ATGCAT 1 cut(s) 261
MscI TGGCCA 1 cut(s) 58
MslI CAYNNNNRTG 1 cut(s) 457
Msp20I TGGCCA 1 cut(s) 58
MspI CCGG 1 cut(s) 8
MunI CAATTG 1 cut(s) 52
MwoI GCNNNNNNNGC 1 cut(s) 363
NdeI CATATG 4 cut(s) 261, 400, 479, 487
NdeII GATC 2 cut(s) 108, 142
NlaIII CATG 1 cut(s) 129
NlaIV GGNNCC 2 cut(s) 76, 100
NmeAIII GCCGAG 1 cut(s) 392
NmuCI GTSAC 1 cut(s) 247
NsiI ATGCAT 1 cut(s) 261
OliI CACNNNNGTG 1 cut(s) 457
PfeI GAWTC 2 cut(s) 214, 278
PflMI CCANNNNNTGG 1 cut(s) 39
PkrI GCNGC 1 cut(s) 50
PleI GAGTC 1 cut(s) 394
PpsI GAGTC 1 cut(s) 394
PspEI GGTNACC 1 cut(s) 241
PspN4I GGNNCC 2 cut(s) 76, 100
PsuI RGATCY 1 cut(s) 108
RsaI GTAC 1 cut(s) 155
RsaNI GTAC 1 cut(s) 154
RseI CAYNNNNRTG 1 cut(s) 457
SatI GCNGC 1 cut(s) 49
Sau3AI GATC 2 cut(s) 108, 142
SchI GAGTC 1 cut(s) 395
SduI GDGCHC 1 cut(s) 304
SetI ASST 7 cut(s) 50, 80, 104, 183, 231, 297, 379
SfaNI GCATC 1 cut(s) 246
SfcI CTRYAG 2 cut(s) 157, 465
SmiMI CAYNNNNRTG 1 cut(s) 457
SmlI CTYRAG 1 cut(s) 440
SmoI CTYRAG 1 cut(s) 440
Sse9I AATT 4 cut(s) 52, 314, 421, 491
SspMI CTAG 2 cut(s) 269, 378
StyI CCWWGG 1 cut(s) 38
TaaI ACNGT 2 cut(s) 247, 330
TaiI ACGT 1 cut(s) 297
TaqI TCGA 3 cut(s) 105, 117, 333
TasI AATT 4 cut(s) 52, 314, 421, 491
TatI WGTACW 1 cut(s) 153
TfiI GAWTC 2 cut(s) 214, 278
TseFI GTSAC 1 cut(s) 247
TseI GCWGC 1 cut(s) 48
Tsp45I GTSAC 1 cut(s) 247
TspDTI ATGAA 1 cut(s) 504
Van91I CCANNNNNTGG 1 cut(s) 39
XapI RAATTY 2 cut(s) 421, 491
XspI CTAG 2 cut(s) 269, 378
Zsp2I ATGCAT 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.