Rorug05G0478700

Protein of unknown function, DUF538

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0002071
Physical Location & Seq
Reverse (-)
65944991 .. 65946115
1125 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0478700.1

Sequence Viewer

Length: 372 bp
ATGCCTAGCACATATATGGAGGCCTATAACCCCATCATCTATCCCATTGCAGGGGAGGATGATTGGGAACCTGTAGAGTATCCCATTGCACCTCCACCTTACAAGCAGCAAGCTGGAAGGCCTAAGATGAAGAGGCATAAGGAACCAGGAGAGAAGGAAAAAGCCCCACCACCACCTGCTCCTAAAGAGGGGAAACTCTCTAAAGCTGGGATCAAGATGTCCTGCAAAATATGTGGCCAGCAAGGACATAACAAATTGGGTTGTCCTATAACAAAGGCCAAAAAGGCAGCAGCAACAGTAAGTAGTTTTCATCAACATTCTATTCTTATTTTCATCAACTTCATGTTGGCAAATTCTGTTTTGTTGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF538

Protein Analysis

123

Amino Acids

13.62

Weight (kDa)

9.36

Isoelectric Point (pI)

67.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 184
Acc36I ACCTGC 1 cut(s) 184
AclWI GGATC 1 cut(s) 218
AcoI YGGCCR 1 cut(s) 235
AcsI RAATTY 1 cut(s) 352
AfaI GTAC 1 cut(s) 368
AfiI CCNNNNNNNGG 3 cut(s) 50, 51, 188
AjnI CCWGG 1 cut(s) 145
AluBI AGCT 2 cut(s) 113, 206
AluI AGCT 2 cut(s) 113, 206
AlwI GGATC 1 cut(s) 218
AoxI GGCC 4 cut(s) 21, 119, 235, 276
ApeKI GCWGC 3 cut(s) 106, 287, 290
ApoI RAATTY 1 cut(s) 352
BalI TGGCCA 1 cut(s) 237
BbvI GCAGC 3 cut(s) 118, 299, 302
BccI CCATC 1 cut(s) 41
BciT130I CCWGG 1 cut(s) 147
BciVI GTATCC 1 cut(s) 90
BfaI CTAG 1 cut(s) 6
BfmI CTRYAG 1 cut(s) 72
BfuAI ACCTGC 1 cut(s) 184
BfuI GTATCC 1 cut(s) 90
BglI GCCNNNNNGGC 1 cut(s) 284
BisI GCNGC 3 cut(s) 107, 288, 291
BlsI GCNGC 3 cut(s) 108, 289, 292
Bme1390I CCNGG 1 cut(s) 147
BmiI GGNNCC 2 cut(s) 69, 144
BmrFI CCNGG 1 cut(s) 147
Bsc4I CCNNNNNNNGG 3 cut(s) 50, 51, 188
Bse3DI GCAATG 2 cut(s) 45, 84
BseBI CCWGG 1 cut(s) 147
BseGI GGATG 1 cut(s) 64
BseLI CCNNNNNNNGG 3 cut(s) 50, 51, 188
BseMI GCAATG 2 cut(s) 45, 84
BseXI GCAGC 3 cut(s) 118, 299, 302
BseYI CCCAGC 1 cut(s) 206
BshFI GGCC 4 cut(s) 23, 121, 237, 278
BslI CCNNNNNNNGG 3 cut(s) 50, 51, 188
BsnI GGCC 4 cut(s) 23, 121, 237, 278
Bsp143I GATC 1 cut(s) 210
BspANI GGCC 4 cut(s) 23, 121, 237, 278
BspLI GGNNCC 2 cut(s) 69, 144
BspMI ACCTGC 1 cut(s) 184
BspPI GGATC 1 cut(s) 218
BsrDI GCAATG 2 cut(s) 45, 84
BssMI GATC 1 cut(s) 210
Bst2UI CCWGG 1 cut(s) 147
Bst4CI ACNGT 1 cut(s) 298
Bst6I CTCTTC 1 cut(s) 125
BstC8I GCNNGC 2 cut(s) 111, 239
BstDEI CTNAG 1 cut(s) 123
BstF5I GGATG 1 cut(s) 64
BstKTI GATC 1 cut(s) 213
BstMBI GATC 1 cut(s) 210
BstMWI GCNNNNNNNGC 1 cut(s) 284
BstNI CCWGG 1 cut(s) 147
BstSCI CCNGG 1 cut(s) 145
BstSFI CTRYAG 1 cut(s) 72
BstV1I GCAGC 3 cut(s) 118, 299, 302
BsuI GTATCC 1 cut(s) 90
BsuRI GGCC 4 cut(s) 23, 121, 237, 278
BtsCI GGATG 1 cut(s) 64
BveI ACCTGC 1 cut(s) 184
Cac8I GCNNGC 2 cut(s) 111, 239
Csp6I GTAC 1 cut(s) 367
CspCI CAANNNNNGTGG 2 cut(s) 214, 249
CviAII CATG 1 cut(s) 343
CviJI RGCY 7 cut(s) 23, 113, 121, 164, 206, 237, 278
CviKI_1 RGCY 7 cut(s) 23, 113, 121, 164, 206, 237, 278
CviQI GTAC 1 cut(s) 367
DdeI CTNAG 1 cut(s) 123
DpnI GATC 1 cut(s) 212
DpnII GATC 1 cut(s) 210
EaeI YGGCCR 1 cut(s) 235
Eam1104I CTCTTC 1 cut(s) 125
EarI CTCTTC 1 cut(s) 125
Eco147I AGGCCT 2 cut(s) 23, 121
EcoRII CCWGG 1 cut(s) 145
FaeI CATG 1 cut(s) 346
FaiI YATR 9 cut(s) 13, 15, 17, 27, 138, 232, 249, 269, 344
FatI CATG 1 cut(s) 342
Fnu4HI GCNGC 3 cut(s) 107, 288, 291
FokI GGATG 1 cut(s) 71
Fsp4HI GCNGC 3 cut(s) 107, 288, 291
FspBI CTAG 1 cut(s) 6
GluI GCNGC 3 cut(s) 107, 288, 291
GsaI CCCAGC 1 cut(s) 210
HaeIII GGCC 4 cut(s) 23, 121, 237, 278
Hin1II CATG 1 cut(s) 346
Hpy188III TCNNGA 1 cut(s) 214
HpyAV CCTTC 2 cut(s) 111, 148
HpyCH4III ACNGT 1 cut(s) 298
HpyCH4V TGCA 3 cut(s) 50, 89, 225
HpyF10VI GCNNNNNNNGC 1 cut(s) 284
HpyF3I CTNAG 1 cut(s) 123
Hsp92II CATG 1 cut(s) 346
Kzo9I GATC 1 cut(s) 210
LmnI GCTCC 1 cut(s) 184
LpnPI CCDG 9 cut(s) 36, 84, 99, 132, 159, 189, 192, 235, 251
Lsp1109I GCAGC 3 cut(s) 118, 299, 302
MaeI CTAG 1 cut(s) 6
MalI GATC 1 cut(s) 212
MboI GATC 1 cut(s) 210
MboII GAAGA 1 cut(s) 142
MlsI TGGCCA 1 cut(s) 237
MluCI AATT 2 cut(s) 254, 352
MluNI TGGCCA 1 cut(s) 237
MnlI CCTC 5 cut(s) 13, 49, 102, 126, 181
Mox20I TGGCCA 1 cut(s) 237
MscI TGGCCA 1 cut(s) 237
MslI CAYNNNNRTG 1 cut(s) 14
Msp20I TGGCCA 1 cut(s) 237
MspR9I CCNGG 1 cut(s) 147
MvaI CCWGG 1 cut(s) 147
MwoI GCNNNNNNNGC 1 cut(s) 284
NdeII GATC 1 cut(s) 210
NlaIII CATG 1 cut(s) 346
NlaIV GGNNCC 2 cut(s) 69, 144
PaqCI CACCTGC 1 cut(s) 184
PceI AGGCCT 2 cut(s) 23, 121
PkrI GCNGC 3 cut(s) 108, 289, 292
Psp6I CCWGG 1 cut(s) 145
PspFI CCCAGC 1 cut(s) 206
PspGI CCWGG 1 cut(s) 145
PspN4I GGNNCC 2 cut(s) 69, 144
RsaI GTAC 1 cut(s) 368
RsaNI GTAC 1 cut(s) 367
RseI CAYNNNNRTG 1 cut(s) 14
SatI GCNGC 3 cut(s) 107, 288, 291
Sau3AI GATC 1 cut(s) 210
ScrFI CCNGG 1 cut(s) 147
SetI ASST 6 cut(s) 73, 94, 100, 115, 178, 208
SfcI CTRYAG 1 cut(s) 72
SmiMI CAYNNNNRTG 1 cut(s) 14
Sse9I AATT 2 cut(s) 254, 352
SseBI AGGCCT 2 cut(s) 23, 121
SspMI CTAG 1 cut(s) 6
StuI AGGCCT 2 cut(s) 23, 121
StyD4I CCNGG 1 cut(s) 145
TaaI ACNGT 1 cut(s) 298
TasI AATT 2 cut(s) 254, 352
TatI WGTACW 1 cut(s) 366
TseI GCWGC 3 cut(s) 106, 287, 290
TspDTI ATGAA 4 cut(s) 143, 299, 322, 331
XapI RAATTY 1 cut(s) 352
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.