Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001381.1

Orthogroup ID

OG0002071

Physical Location & Seq

Genomic Coordinates Reverse (-)

94065 .. 95516

Gene Structure 1452 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001381.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

atggcctctgtaagtgtggctccttcatctggattaggagacggcagtggaaatacggttgcccaagacctcaaacccaaccccaaccgtccatccacctcgctccaatcaatcacagatgtccatgacctcctccccaagaacggcctcccaaggggtctgttacccgacaacataagatcctacactctctccgacgatggaacattcgagatctatctcgaaaacccgtgttatgtttccgtgacggggatgcatatggagcaagggtctgattcagttgagttttacgttggggctctgtccgagaaattgcctgctaaacagttcgaggatattcaggggcggccctgggggtgttcaaatggagcagccgcacaaggcctccagttctcgaaggcctcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF538

Protein Analysis

135

Amino Acids

14.3

Weight (kDa)

4.67

Isoelectric Point (pI)

44.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55265
fragaria_vesca	FvH4_3g44990 FvH4_3g45000
malus_domestica	MD03G1007700.v1.1 MD11G1010900.v1.1
prunus_persica	Prupe.6G009400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0081761 RchiOBHm_Chr5g0081931 RchiOBHm_Chr5g0081981 RchiOBHm_Chr5g0082001 RchiOBHm_Chr5g0082141 RchiOBHm_Chr5g0082171 RchiOBHm_Chr5g0082211 RchiOBHm_Chr5g0082231 RchiOBHm_Chr5g0082391 RchiOBHm_Chr5g0082501 RchiOBHm_Chr5g0082531 RchiOBHm_Chr5g0082751 RchiOBHm_Chr5g0082781
rosa_multiflora	Rmu_sc0000303.1_g000015 Rmu_sc0001381.1_g000025 Rmu_sc0001687.1_g000005 Rmu_sc0001687.1_g000012 Rmu_sc0001687.1_g000036 Rmu_sc0002723.1_g000041 Rmu_sc0006948.1_g000007
rosa_roxburghii	Rroxscaffold_1G00001680 Rroxscaffold_1G00001850
rosa_rugosa	Rorug03G0305700.1 Rorug05G0478100 Rorug05G0478700 Rorug05G0479300 Rorug05G0479500
rosa_samantha	Rh5BG554600 Rh5BG556100 Rh5BG556700 Rh5DG564300 Rh5DG564600 Rh5DG565400 Rh5DG565500
rosa_wichuraiana	Rw0G009110 Rw0G019550 Rw5G049440 Rw5G049550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	346, 375
AclWI	GGATC	1 cut(s)	174
AfiI	CCNNNNNNNGG	4 cut(s)	29, 143, 154, 249
AgsI	TTSAA	1 cut(s)	363
AjnI	CCWGG	1 cut(s)	350
Alw26I	GTCTC	1 cut(s)	33
AlwI	GGATC	1 cut(s)	174
AoxI	GGCC	5 cut(s)	3, 145, 347, 382, 399
ApeKI	GCWGC	1 cut(s)	371
AspS9I	GGNCC	1 cut(s)	348
BanII	GRGCYC	1 cut(s)	301
BbvI	GCAGC	1 cut(s)	383
BccI	CCATC	2 cut(s)	100, 194
BceAI	ACGGC	2 cut(s)	58, 160
BciT130I	CCWGG	1 cut(s)	352
BcoDI	GTCTC	1 cut(s)	33
BglII	AGATCT	1 cut(s)	213
BisI	GCNGC	3 cut(s)	347, 372, 375
BlsI	GCNGC	3 cut(s)	348, 373, 376
Bme1390I	CCNGG	1 cut(s)	352
BmgT120I	GGNCC	1 cut(s)	348
BmiI	GGNNCC	1 cut(s)	21
BmrFI	CCNGG	1 cut(s)	352
BmsI	GCATC	1 cut(s)	243
BpmI	CTGGAG	1 cut(s)	371
BsaJI	CCNNGG	3 cut(s)	152, 350, 351
BsaXI	ACNNNNNCTCC	6 cut(s)	176, 206, 254, 284, 369, 399
Bsc4I	CCNNNNNNNGG	4 cut(s)	29, 143, 154, 249
Bse1I	ACTGG	1 cut(s)	388
BseBI	CCWGG	1 cut(s)	352
BseDI	CCNNGG	3 cut(s)	152, 350, 351
BseGI	GGATG	2 cut(s)	92, 258
BseLI	CCNNNNNNNGG	4 cut(s)	29, 143, 154, 249
BseNI	ACTGG	1 cut(s)	388
BseRI	GAGGAG	1 cut(s)	122
BseXI	GCAGC	1 cut(s)	383
BshFI	GGCC	5 cut(s)	5, 147, 349, 384, 401
BslI	CCNNNNNNNGG	4 cut(s)	29, 143, 154, 249
BsmAI	GTCTC	1 cut(s)	33
BsmBI	CGTCTC	1 cut(s)	33
BsnI	GGCC	5 cut(s)	5, 147, 349, 384, 401
Bsp1286I	GDGCHC	1 cut(s)	301
Bsp143I	GATC	2 cut(s)	179, 213
BspACI	CCGC	2 cut(s)	346, 375
BspANI	GGCC	5 cut(s)	5, 147, 349, 384, 401
BspLI	GGNNCC	1 cut(s)	21
BspPI	GGATC	1 cut(s)	174
BsrI	ACTGG	1 cut(s)	388
BssECI	CCNNGG	3 cut(s)	152, 350, 351
BssMI	GATC	2 cut(s)	179, 213
BssT1I	CCWWGG	1 cut(s)	152
Bst2UI	CCWGG	1 cut(s)	352
Bst4CI	ACNGT	3 cut(s)	58, 89, 327
BstC8I	GCNNGC	1 cut(s)	318
BstDEI	CTNAG	1 cut(s)	405
BstF5I	GGATG	2 cut(s)	92, 258
BstKTI	GATC	2 cut(s)	182, 216
BstMAI	GTCTC	1 cut(s)	33
BstMBI	GATC	2 cut(s)	179, 213
BstMWI	GCNNNNNNNGC	1 cut(s)	262
BstNI	CCWGG	1 cut(s)	352
BstSCI	CCNGG	1 cut(s)	350
BstV1I	GCAGC	1 cut(s)	383
BstX2I	RGATCY	2 cut(s)	179, 213
BstYI	RGATCY	2 cut(s)	179, 213
BsuRI	GGCC	5 cut(s)	5, 147, 349, 384, 401
BtsCI	GGATG	2 cut(s)	92, 258
BtsI	GCAGTG	1 cut(s)	52
BtsIMutI	CAGTG	1 cut(s)	52
Cac8I	GCNNGC	1 cut(s)	318
Cfr13I	GGNCC	1 cut(s)	348
CviAII	CATG	1 cut(s)	125
CviJI	RGCY	8 cut(s)	5, 20, 147, 299, 349, 374, 384, 401
CviKI_1	RGCY	8 cut(s)	5, 20, 147, 299, 349, 374, 384, 401
DdeI	CTNAG	1 cut(s)	405
DpnI	GATC	2 cut(s)	181, 215
DpnII	GATC	2 cut(s)	179, 213
Eco130I	CCWWGG	1 cut(s)	152
Eco147I	AGGCCT	2 cut(s)	384, 401
Eco24I	GRGCYC	1 cut(s)	301
EcoRII	CCWGG	1 cut(s)	350
EcoT14I	CCWWGG	1 cut(s)	152
EcoT22I	ATGCAT	1 cut(s)	258
EcoT38I	GRGCYC	1 cut(s)	301
ErhI	CCWWGG	1 cut(s)	152
Esp3I	CGTCTC	1 cut(s)	33
FaeI	CATG	1 cut(s)	128
FaiI	YATR	5 cut(s)	126, 176, 237, 258, 260
FatI	CATG	1 cut(s)	124
FauNDI	CATATG	1 cut(s)	258
Fnu4HI	GCNGC	3 cut(s)	347, 372, 375
FokI	GGATG	2 cut(s)	79, 265
FriOI	GRGCYC	1 cut(s)	301
Fsp4HI	GCNGC	3 cut(s)	347, 372, 375
GluI	GCNGC	3 cut(s)	347, 372, 375
GsuI	CTGGAG	1 cut(s)	371
HaeIII	GGCC	5 cut(s)	5, 147, 349, 384, 401
Hin1II	CATG	1 cut(s)	128
HinfI	GANTC	1 cut(s)	275
Hpy188I	TCNGA	3 cut(s)	196, 274, 307
Hpy188III	TCNNGA	4 cut(s)	30, 211, 221, 394
Hpy99I	CGWCG	1 cut(s)	200
HpyAV	CCTTC	2 cut(s)	33, 391
HpyCH4III	ACNGT	3 cut(s)	58, 89, 327
HpyCH4IV	ACGT	1 cut(s)	291
HpyCH4V	TGCA	1 cut(s)	256
HpyF10VI	GCNNNNNNNGC	1 cut(s)	262
HpyF3I	CTNAG	1 cut(s)	405
HpySE526I	ACGT	1 cut(s)	291
Hsp92II	CATG	1 cut(s)	128
Kzo9I	GATC	2 cut(s)	179, 213
LmnI	GCTCC	4 cut(s)	25, 108, 262, 368
LpnPI	CCDG	6 cut(s)	15, 326, 330, 337, 364, 401
Lsp1109I	GCAGC	1 cut(s)	383
LweI	GCATC	1 cut(s)	243
MaeII	ACGT	1 cut(s)	291
MaeIII	GTNAC	2 cut(s)	162, 244
MalI	GATC	2 cut(s)	181, 215
MboI	GATC	2 cut(s)	179, 213
MflI	RGATCY	2 cut(s)	179, 213
MhlI	GDGCHC	1 cut(s)	301
MluCI	AATT	1 cut(s)	311
MmeI	TCCRAC	1 cut(s)	219
MnlI	CCTC	8 cut(s)	16, 80, 109, 140, 143, 158, 325, 395
Mph1103I	ATGCAT	1 cut(s)	258
MspR9I	CCNGG	1 cut(s)	352
MvaI	CCWGG	1 cut(s)	352
MwoI	GCNNNNNNNGC	1 cut(s)	262
NdeI	CATATG	1 cut(s)	258
NdeII	GATC	2 cut(s)	179, 213
NlaIII	CATG	1 cut(s)	128
NlaIV	GGNNCC	1 cut(s)	21
NmuCI	GTSAC	1 cut(s)	244
NsiI	ATGCAT	1 cut(s)	258
PasI	CCCWGGG	1 cut(s)	351
PceI	AGGCCT	2 cut(s)	384, 401
PfeI	GAWTC	1 cut(s)	275
PkrI	GCNGC	3 cut(s)	348, 373, 376
Psp6I	CCWGG	1 cut(s)	350
PspGI	CCWGG	1 cut(s)	350
PspN4I	GGNNCC	1 cut(s)	21
PspPI	GGNCC	1 cut(s)	348
PsuI	RGATCY	2 cut(s)	179, 213
SatI	GCNGC	3 cut(s)	347, 372, 375
Sau3AI	GATC	2 cut(s)	179, 213
Sau96I	GGNCC	1 cut(s)	348
ScrFI	CCNGG	1 cut(s)	352
SduI	GDGCHC	1 cut(s)	301
SetI	ASST	4 cut(s)	72, 101, 132, 294
SfaNI	GCATC	1 cut(s)	243
Sse9I	AATT	1 cut(s)	311
SseBI	AGGCCT	2 cut(s)	384, 401
SsiI	CCGC	2 cut(s)	346, 375
StuI	AGGCCT	2 cut(s)	384, 401
StyD4I	CCNGG	1 cut(s)	350
StyI	CCWWGG	1 cut(s)	152
TaaI	ACNGT	3 cut(s)	58, 89, 327
TaiI	ACGT	1 cut(s)	294
TaqI	TCGA	4 cut(s)	210, 222, 330, 395
TasI	AATT	1 cut(s)	311
TauI	GCSGC	2 cut(s)	349, 377
TfiI	GAWTC	1 cut(s)	275
TscAI	CASTG	1 cut(s)	52
TseFI	GTSAC	1 cut(s)	244
TseI	GCWGC	1 cut(s)	371
Tsp45I	GTSAC	1 cut(s)	244
TspDTI	ATGAA	1 cut(s)	15
TspGWI	ACGGA	1 cut(s)	232
TspRI	CASTG	1 cut(s)	52
Zsp2I	ATGCAT	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.