Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002071

Physical Location & Seq

Genomic Coordinates Reverse (-)

729581 .. 732075

Gene Structure 2495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G009400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGCATCTTCAATCGCTCAGATCTCTTTCTACCTTCTAATTCTAACCTTTTTCTCAGAAACCCATTTCGGTCTATCCCTCAGAGACCTCAAATCCGATCCTAACCGTCCATCCACCACAGCCCAATCAATTACAGACGTTCATGACCTCCTCCCCAAGTACGGCCTCCCAAAGGGTCTGTTACCAGACAACGTAAATTCCTACACTCTCTCTGAAGATGGCAGCTTTGAGATCTATCTTGAAAGCCCATGTTACGTGCACTTTGATCAGTTGGTGTACTACAACAAGAACATTAAAGGGAAACTGAGTTACGGGTCAGTGTCTGATGTGTCTGGGATTCAAGCGAAGAAGCTTTTCATTTGGGTCTCTGTGACTGGGATTCAGGTTGATCAAGGATCCGACTCCGTTGAGTTTTATGTTGGAGCTTTGTCTGAGAAACTGCCTGCTAAACAGTTTGAGGATATTCCTGTATGTAAAAGCAAGGCCTGCCAAGGAACTTATGTAGACTCAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF538

Protein Analysis

172

Amino Acids

18.94

Weight (kDa)

5.09

Isoelectric Point (pI)

36.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55265
fragaria_vesca	FvH4_3g44990 FvH4_3g45000
malus_domestica	MD03G1007700.v1.1 MD11G1010900.v1.1
prunus_persica	Prupe.6G009400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0081761 RchiOBHm_Chr5g0081931 RchiOBHm_Chr5g0081981 RchiOBHm_Chr5g0082001 RchiOBHm_Chr5g0082141 RchiOBHm_Chr5g0082171 RchiOBHm_Chr5g0082211 RchiOBHm_Chr5g0082231 RchiOBHm_Chr5g0082391 RchiOBHm_Chr5g0082501 RchiOBHm_Chr5g0082531 RchiOBHm_Chr5g0082751 RchiOBHm_Chr5g0082781
rosa_multiflora	Rmu_sc0000303.1_g000015 Rmu_sc0001381.1_g000025 Rmu_sc0001687.1_g000005 Rmu_sc0001687.1_g000012 Rmu_sc0001687.1_g000036 Rmu_sc0002723.1_g000041 Rmu_sc0006948.1_g000007
rosa_roxburghii	Rroxscaffold_1G00001680 Rroxscaffold_1G00001850
rosa_rugosa	Rorug03G0305700.1 Rorug05G0478100 Rorug05G0478700 Rorug05G0479300 Rorug05G0479500
rosa_samantha	Rh5BG554600 Rh5BG556100 Rh5BG556700 Rh5DG564300 Rh5DG564600 Rh5DG565400 Rh5DG565500
rosa_wichuraiana	Rw0G009110 Rw0G019550 Rw5G049440 Rw5G049550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	504
AclWI	GGATC	3 cut(s)	92, 390, 403
AcsI	RAATTY	1 cut(s)	196
AcuI	CTGAAG	1 cut(s)	234
AfaI	GTAC	2 cut(s)	161, 278
AfiI	CCNNNNNNNGG	2 cut(s)	161, 172
AgsI	TTSAA	3 cut(s)	12, 242, 341
AluBI	AGCT	3 cut(s)	225, 352, 425
AluI	AGCT	3 cut(s)	225, 352, 425
Alw21I	GWGCWC	1 cut(s)	261
Alw26I	GTCTC	2 cut(s)	78, 370
Alw44I	GTGCAC	1 cut(s)	257
AlwI	GGATC	3 cut(s)	92, 390, 403
AlwNI	CAGNNNCTG	1 cut(s)	323
AoxI	GGCC	2 cut(s)	163, 483
ApaLI	GTGCAC	1 cut(s)	257
ApeKI	GCWGC	1 cut(s)	222
ApoI	RAATTY	1 cut(s)	196
Asp700I	GAANNNNTTC	1 cut(s)	353
BaeGI	GKGCMC	1 cut(s)	261
BamHI	GGATCC	1 cut(s)	395
Bbv12I	GWGCWC	1 cut(s)	261
BbvI	GCAGC	1 cut(s)	234
BccI	CCATC	2 cut(s)	118, 212
BceAI	ACGGC	1 cut(s)	178
BclI	TGATCA	2 cut(s)	265, 388
BcoDI	GTCTC	2 cut(s)	78, 370
BglII	AGATCT	2 cut(s)	21, 231
BisI	GCNGC	1 cut(s)	223
BlsI	GCNGC	1 cut(s)	224
BmiI	GGNNCC	1 cut(s)	397
BmrI	ACTGGG	1 cut(s)	384
BmsI	GCATC	1 cut(s)	14
BmuI	ACTGGG	1 cut(s)	384
BsaAI	YACGTR	1 cut(s)	256
BsaI	GGTCTC	2 cut(s)	78, 370
BsaJI	CCNNGG	1 cut(s)	490
Bsc4I	CCNNNNNNNGG	2 cut(s)	161, 172
Bse1I	ACTGG	1 cut(s)	379
BseDI	CCNNGG	1 cut(s)	490
BseGI	GGATG	1 cut(s)	110
BseLI	CCNNNNNNNGG	2 cut(s)	161, 172
BseMII	CTCAG	5 cut(s)	32, 69, 94, 296, 423
BseNI	ACTGG	1 cut(s)	379
BseRI	GAGGAG	1 cut(s)	140
BseSI	GKGCMC	1 cut(s)	261
BseXI	GCAGC	1 cut(s)	234
BshFI	GGCC	2 cut(s)	165, 485
BsiHKAI	GWGCWC	1 cut(s)	261
BslI	CCNNNNNNNGG	2 cut(s)	161, 172
BsmAI	GTCTC	2 cut(s)	78, 370
BsnI	GGCC	2 cut(s)	165, 485
Bso31I	GGTCTC	2 cut(s)	78, 370
Bsp1286I	GDGCHC	1 cut(s)	261
Bsp143I	GATC	6 cut(s)	21, 97, 231, 265, 388, 395
BspANI	GGCC	2 cut(s)	165, 485
BspCNI	CTCAG	5 cut(s)	31, 68, 93, 297, 424
BspHI	TCATGA	1 cut(s)	142
BspLI	GGNNCC	1 cut(s)	397
BspPI	GGATC	3 cut(s)	92, 390, 403
BspTNI	GGTCTC	2 cut(s)	78, 370
BsrI	ACTGG	1 cut(s)	379
BssECI	CCNNGG	1 cut(s)	490
BssMI	GATC	6 cut(s)	21, 97, 231, 265, 388, 395
BssT1I	CCWWGG	1 cut(s)	490
Bst4CI	ACNGT	2 cut(s)	107, 453
BstAPI	GCANNNNNTGC	1 cut(s)	486
BstBAI	YACGTR	1 cut(s)	256
BstC8I	GCNNGC	2 cut(s)	444, 487
BstDEI	CTNAG	5 cut(s)	18, 55, 80, 305, 432
BstENI	CCTNNNNNAGG	1 cut(s)	170
BstF5I	GGATG	1 cut(s)	110
BstKTI	GATC	6 cut(s)	24, 100, 234, 268, 391, 398
BstMAI	GTCTC	2 cut(s)	78, 370
BstMBI	GATC	6 cut(s)	21, 97, 231, 265, 388, 395
BstMWI	GCNNNNNNNGC	1 cut(s)	486
BstSLI	GKGCMC	1 cut(s)	261
BstV1I	GCAGC	1 cut(s)	234
BstX2I	RGATCY	3 cut(s)	21, 231, 395
BstYI	RGATCY	3 cut(s)	21, 231, 395
BsuRI	GGCC	2 cut(s)	165, 485
BtsCI	GGATG	1 cut(s)	110
BtsIMutI	CAGTG	1 cut(s)	324
Cac8I	GCNNGC	2 cut(s)	444, 487
CaiI	CAGNNNCTG	1 cut(s)	323
CciI	TCATGA	1 cut(s)	142
Csp6I	GTAC	2 cut(s)	160, 277
CviAII	CATG	2 cut(s)	143, 249
CviJI	RGCY	7 cut(s)	122, 165, 225, 246, 352, 425, 485
CviKI_1	RGCY	7 cut(s)	122, 165, 225, 246, 352, 425, 485
CviQI	GTAC	2 cut(s)	160, 277
DdeI	CTNAG	5 cut(s)	18, 55, 80, 305, 432
DpnI	GATC	6 cut(s)	23, 99, 233, 267, 390, 397
DpnII	GATC	6 cut(s)	21, 97, 231, 265, 388, 395
Eco130I	CCWWGG	1 cut(s)	490
Eco147I	AGGCCT	1 cut(s)	485
Eco31I	GGTCTC	2 cut(s)	78, 370
Eco57I	CTGAAG	1 cut(s)	234
EcoNI	CCTNNNNNAGG	1 cut(s)	170
EcoT14I	CCWWGG	1 cut(s)	490
ErhI	CCWWGG	1 cut(s)	490
FaeI	CATG	2 cut(s)	146, 252
FaiI	YATR	5 cut(s)	144, 250, 417, 472, 501
FatI	CATG	2 cut(s)	142, 248
FbaI	TGATCA	2 cut(s)	265, 388
FblI	GTMKAC	1 cut(s)	504
Fnu4HI	GCNGC	1 cut(s)	223
FokI	GGATG	1 cut(s)	97
Fsp4HI	GCNGC	1 cut(s)	223
GluI	GCNGC	1 cut(s)	223
HaeIII	GGCC	2 cut(s)	165, 485
Hin1II	CATG	2 cut(s)	146, 252
HindIII	AAGCTT	1 cut(s)	350
HinfI	GANTC	4 cut(s)	337, 379, 401, 506
Hpy166II	GTNNAC	3 cut(s)	259, 277, 505
Hpy188I	TCNGA	9 cut(s)	21, 58, 83, 97, 214, 325, 400, 433, 515
Hpy188III	TCNNGA	2 cut(s)	143, 239
Hpy8I	GTNNAC	3 cut(s)	259, 277, 505
HpyAV	CCTTC	1 cut(s)	44
HpyCH4III	ACNGT	2 cut(s)	107, 453
HpyCH4IV	ACGT	3 cut(s)	138, 192, 255
HpyCH4V	TGCA	1 cut(s)	259
HpyF10VI	GCNNNNNNNGC	1 cut(s)	486
HpyF3I	CTNAG	5 cut(s)	18, 55, 80, 305, 432
HpySE526I	ACGT	3 cut(s)	138, 192, 255
Hsp92II	CATG	2 cut(s)	146, 252
Ksp22I	TGATCA	2 cut(s)	265, 388
Kzo9I	GATC	6 cut(s)	21, 97, 231, 265, 388, 395
LmnI	GCTCC	1 cut(s)	422
LpnPI	CCDG	7 cut(s)	198, 318, 360, 368, 456, 480, 499
Lsp1109I	GCAGC	1 cut(s)	234
LweI	GCATC	1 cut(s)	14
MaeII	ACGT	3 cut(s)	138, 192, 255
MaeIII	GTNAC	4 cut(s)	180, 251, 308, 370
MalI	GATC	6 cut(s)	23, 99, 233, 267, 390, 397
MboI	GATC	6 cut(s)	21, 97, 231, 265, 388, 395
MboII	GAAGA	2 cut(s)	227, 358
MflI	RGATCY	3 cut(s)	21, 231, 395
MhlI	GDGCHC	1 cut(s)	261
MluCI	AATT	3 cut(s)	39, 129, 196
MlyI	GAGTC	2 cut(s)	395, 500
MmeI	TCCRAC	2 cut(s)	400, 423
MnlI	CCTC	6 cut(s)	89, 98, 158, 161, 176, 451
MroXI	GAANNNNTTC	1 cut(s)	353
MseI	TTAA	1 cut(s)	294
MwoI	GCNNNNNNNGC	1 cut(s)	486
NdeII	GATC	6 cut(s)	21, 97, 231, 265, 388, 395
NlaIII	CATG	2 cut(s)	146, 252
NlaIV	GGNNCC	1 cut(s)	397
NmuCI	GTSAC	1 cut(s)	370
PagI	TCATGA	1 cut(s)	142
PceI	AGGCCT	1 cut(s)	485
PdmI	GAANNNNTTC	1 cut(s)	353
PfeI	GAWTC	2 cut(s)	337, 379
PkrI	GCNGC	1 cut(s)	224
PleI	GAGTC	2 cut(s)	395, 500
PpsI	GAGTC	2 cut(s)	395, 500
Ppu21I	YACGTR	1 cut(s)	256
PspN4I	GGNNCC	1 cut(s)	397
PstNI	CAGNNNCTG	1 cut(s)	323
PsuI	RGATCY	3 cut(s)	21, 231, 395
RsaI	GTAC	2 cut(s)	161, 278
RsaNI	GTAC	2 cut(s)	160, 277
SaqAI	TTAA	1 cut(s)	294
SatI	GCNGC	1 cut(s)	223
Sau3AI	GATC	6 cut(s)	21, 97, 231, 265, 388, 395
SchI	GAGTC	2 cut(s)	395, 500
SduI	GDGCHC	1 cut(s)	261
SfaNI	GCATC	1 cut(s)	14
Sse9I	AATT	3 cut(s)	39, 129, 196
SseBI	AGGCCT	1 cut(s)	485
StuI	AGGCCT	1 cut(s)	485
StyI	CCWWGG	1 cut(s)	490
TaaI	ACNGT	2 cut(s)	107, 453
TaiI	ACGT	3 cut(s)	141, 195, 258
TaqII	GACCGA	1 cut(s)	59
TasI	AATT	3 cut(s)	39, 129, 196
TatI	WGTACW	1 cut(s)	276
TfiI	GAWTC	2 cut(s)	337, 379
Tru1I	TTAA	1 cut(s)	294
Tru9I	TTAA	1 cut(s)	294
TscAI	CASTG	1 cut(s)	324
TseFI	GTSAC	1 cut(s)	370
TseI	GCWGC	1 cut(s)	222
Tsp45I	GTSAC	1 cut(s)	370
TspDTI	ATGAA	2 cut(s)	131, 346
TspGWI	ACGGA	1 cut(s)	394
TspRI	CASTG	1 cut(s)	324
VneI	GTGCAC	1 cut(s)	257
XagI	CCTNNNNNAGG	1 cut(s)	170
XapI	RAATTY	1 cut(s)	196
XmiI	GTMKAC	1 cut(s)	504
XmnI	GAANNNNTTC	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.