Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006948.1

Orthogroup ID

OG0002071

Physical Location & Seq

Genomic Coordinates Forward (+)

31723 .. 33239

Gene Structure 1517 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006948.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

atgaggagagcaccaacctcgtcgcgggattctttgtgccttgtggtgaggacttttgctaagcttcttcaaaatcacacaatcgatactcgacgtcgtagatcgagcaaaacgaaaatcactggcaagtggcgagaacttgctaaaggtcggttcccgaggatactaggactgaagcacgttggcagagggtttggtggcactgacagtcagcttctgaggattctggaaccggagtgtgatcaccgagacctcaaacccaaccccaaccgtccatccacctcgctccaatcaatcacagacgtccatgacctcctccccaagtacggcctcctaaggggtctgttactcgacaacgtaagatcctacattctatctgacgatggaacctttgagatccatctcgaaaacccatgttatgttcactttgatcagttggtgtactacgacaagaacattaaagggaagctgagtttcggctctgtttccgatgtgtcggggattcaagccaagaagctatttctttgggtttccgtgacggggatgcatatggaacaagggtctgattcagttgagttttacgttggggctctgtccgagaaattgcctactaaacagttcgaggatattcctgtatgtaagagcaaggcttgcagaggaggagctagtgttgagtcaatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF538

Protein Analysis

227

Amino Acids

25.58

Weight (kDa)

9.47

Isoelectric Point (pI)

54.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55265
fragaria_vesca	FvH4_3g44990 FvH4_3g45000
malus_domestica	MD03G1007700.v1.1 MD11G1010900.v1.1
prunus_persica	Prupe.6G009400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0081761 RchiOBHm_Chr5g0081931 RchiOBHm_Chr5g0081981 RchiOBHm_Chr5g0082001 RchiOBHm_Chr5g0082141 RchiOBHm_Chr5g0082171 RchiOBHm_Chr5g0082211 RchiOBHm_Chr5g0082231 RchiOBHm_Chr5g0082391 RchiOBHm_Chr5g0082501 RchiOBHm_Chr5g0082531 RchiOBHm_Chr5g0082751 RchiOBHm_Chr5g0082781
rosa_multiflora	Rmu_sc0000303.1_g000015 Rmu_sc0001381.1_g000025 Rmu_sc0001687.1_g000005 Rmu_sc0001687.1_g000012 Rmu_sc0001687.1_g000036 Rmu_sc0002723.1_g000041 Rmu_sc0006948.1_g000007
rosa_roxburghii	Rroxscaffold_1G00001680 Rroxscaffold_1G00001850
rosa_rugosa	Rorug03G0305700.1 Rorug05G0478100 Rorug05G0478700 Rorug05G0479300 Rorug05G0479500
rosa_samantha	Rh5BG554600 Rh5BG556100 Rh5BG556700 Rh5DG564300 Rh5DG564600 Rh5DG565400 Rh5DG565500
rosa_wichuraiana	Rw0G009110 Rw0G019550 Rw5G049440 Rw5G049550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	97, 306
AccII	CGCG	1 cut(s)	25
AciI	CCGC	1 cut(s)	25
AclWI	GGATC	2 cut(s)	357, 391
AcuI	CTGAAG	1 cut(s)	194
AcyI	GRCGYC	2 cut(s)	94, 303
AfaI	GTAC	2 cut(s)	326, 443
AfiI	CCNNNNNNNGG	4 cut(s)	24, 326, 337, 540
AgsI	TTSAA	2 cut(s)	71, 506
AluBI	AGCT	5 cut(s)	64, 214, 469, 517, 665
AluI	AGCT	5 cut(s)	64, 214, 469, 517, 665
Alw21I	GWGCWC	1 cut(s)	13
Alw26I	GTCTC	1 cut(s)	243
AlwI	GGATC	2 cut(s)	357, 391
AlwNI	CAGNNNCTG	1 cut(s)	217
Ama87I	CYCGRG	1 cut(s)	157
AoxI	GGCC	1 cut(s)	328
AsuHPI	GGTGA	2 cut(s)	58, 236
AvaI	CYCGRG	1 cut(s)	157
AxyI	CCTNAGG	1 cut(s)	335
BanII	GRGCYC	1 cut(s)	592
Bbv12I	GWGCWC	1 cut(s)	13
BccI	CCATC	3 cut(s)	283, 377, 408
BceAI	ACGGC	1 cut(s)	343
BcgI	CGANNNNNNTGC	1 cut(s)	34
BciVI	GTATCC	1 cut(s)	156
BclI	TGATCA	2 cut(s)	241, 430
BcoDI	GTCTC	1 cut(s)	243
BfaI	CTAG	2 cut(s)	167, 666
BfuI	GTATCC	1 cut(s)	156
BlpI	GCTNAGC	1 cut(s)	60
BmeT110I	CYCGRG	1 cut(s)	157
BmiI	GGNNCC	3 cut(s)	155, 231, 388
BmsI	GCATC	1 cut(s)	534
Bpu1102I	GCTNAGC	1 cut(s)	60
Bsa29I	ATCGAT	1 cut(s)	84
BsaHI	GRCGYC	2 cut(s)	94, 303
BsaI	GGTCTC	1 cut(s)	243
BsaJI	CCNNGG	1 cut(s)	158
BsaWI	WCCGGW	1 cut(s)	232
BsaXI	ACNNNNNCTCC	2 cut(s)	654, 684
Bsc4I	CCNNNNNNNGG	4 cut(s)	24, 326, 337, 540
Bse1I	ACTGG	1 cut(s)	127
Bse21I	CCTNAGG	1 cut(s)	335
BseCI	ATCGAT	1 cut(s)	84
BseDI	CCNNGG	1 cut(s)	158
BseGI	GGATG	2 cut(s)	275, 549
BseLI	CCNNNNNNNGG	4 cut(s)	24, 326, 337, 540
BseMII	CTCAG	2 cut(s)	209, 461
BseNI	ACTGG	1 cut(s)	127
BseRI	GAGGAG	4 cut(s)	19, 305, 672, 675
Bsh1236I	CGCG	1 cut(s)	25
BshFI	GGCC	1 cut(s)	330
BshVI	ATCGAT	1 cut(s)	84
BsiHKAI	GWGCWC	1 cut(s)	13
BsiHKCI	CYCGRG	1 cut(s)	157
BsiSI	CCGG	1 cut(s)	233
BslI	CCNNNNNNNGG	4 cut(s)	24, 326, 337, 540
BsmAI	GTCTC	1 cut(s)	243
BsnI	GGCC	1 cut(s)	330
Bso31I	GGTCTC	1 cut(s)	243
BsoBI	CYCGRG	1 cut(s)	157
Bsp1286I	GDGCHC	2 cut(s)	13, 592
Bsp143I	GATC	5 cut(s)	101, 241, 362, 396, 430
Bsp1720I	GCTNAGC	1 cut(s)	60
BspACI	CCGC	1 cut(s)	25
BspANI	GGCC	1 cut(s)	330
BspCNI	CTCAG	2 cut(s)	210, 462
BspDI	ATCGAT	1 cut(s)	84
BspFNI	CGCG	1 cut(s)	25
BspLI	GGNNCC	3 cut(s)	155, 231, 388
BspPI	GGATC	2 cut(s)	357, 391
BspTNI	GGTCTC	1 cut(s)	243
BsrI	ACTGG	1 cut(s)	127
BssECI	CCNNGG	1 cut(s)	158
BssMI	GATC	5 cut(s)	101, 241, 362, 396, 430
BssNI	GRCGYC	2 cut(s)	94, 303
Bst4CI	ACNGT	3 cut(s)	209, 272, 618
BstACI	GRCGYC	2 cut(s)	94, 303
BstAPI	GCANNNNNTGC	1 cut(s)	651
BstC8I	GCNNGC	1 cut(s)	652
BstDEI	CTNAG	4 cut(s)	60, 218, 335, 470
BstF5I	GGATG	2 cut(s)	275, 549
BstFNI	CGCG	1 cut(s)	25
BstKTI	GATC	5 cut(s)	104, 244, 365, 399, 433
BstMAI	GTCTC	1 cut(s)	243
BstMBI	GATC	5 cut(s)	101, 241, 362, 396, 430
BstMWI	GCNNNNNNNGC	1 cut(s)	651
BstUI	CGCG	1 cut(s)	25
BstX2I	RGATCY	2 cut(s)	362, 396
BstYI	RGATCY	2 cut(s)	362, 396
Bsu15I	ATCGAT	1 cut(s)	84
Bsu36I	CCTNAGG	1 cut(s)	335
BsuI	GTATCC	1 cut(s)	156
BsuRI	GGCC	1 cut(s)	330
BsuTUI	ATCGAT	1 cut(s)	84
BtsCI	GGATG	2 cut(s)	275, 549
BtsIMutI	CAGTG	2 cut(s)	120, 201
Cac8I	GCNNGC	1 cut(s)	652
CaiI	CAGNNNCTG	1 cut(s)	217
ClaI	ATCGAT	1 cut(s)	84
Csp6I	GTAC	2 cut(s)	325, 442
CviAII	CATG	2 cut(s)	308, 414
CviQI	GTAC	2 cut(s)	325, 442
DdeI	CTNAG	4 cut(s)	60, 218, 335, 470
DpnI	GATC	5 cut(s)	103, 243, 364, 398, 432
DpnII	GATC	5 cut(s)	101, 241, 362, 396, 430
Eco24I	GRGCYC	1 cut(s)	592
Eco31I	GGTCTC	1 cut(s)	243
Eco57I	CTGAAG	1 cut(s)	194
Eco81I	CCTNAGG	1 cut(s)	335
Eco88I	CYCGRG	1 cut(s)	157
EcoT22I	ATGCAT	1 cut(s)	549
EcoT38I	GRGCYC	1 cut(s)	592
FaeI	CATG	2 cut(s)	311, 417
FaiI	YATR	6 cut(s)	309, 415, 420, 549, 551, 637
FatI	CATG	2 cut(s)	307, 413
FauI	CCCGC	1 cut(s)	18
FauNDI	CATATG	1 cut(s)	549
FbaI	TGATCA	2 cut(s)	241, 430
FokI	GGATG	2 cut(s)	262, 556
FriOI	GRGCYC	1 cut(s)	592
FspBI	CTAG	2 cut(s)	167, 666
HaeIII	GGCC	1 cut(s)	330
HapII	CCGG	1 cut(s)	233
Hin1I	GRCGYC	2 cut(s)	94, 303
Hin1II	CATG	2 cut(s)	311, 417
HindIII	AAGCTT	1 cut(s)	62
HinfI	GANTC	5 cut(s)	29, 223, 502, 566, 674
HpaII	CCGG	1 cut(s)	233
HphI	GGTGA	2 cut(s)	58, 236
Hpy166II	GTNNAC	2 cut(s)	424, 442
Hpy188I	TCNGA	5 cut(s)	219, 379, 490, 565, 598
Hpy188III	TCNNGA	3 cut(s)	157, 227, 404
Hpy8I	GTNNAC	2 cut(s)	424, 442
Hpy99I	CGWCG	3 cut(s)	25, 96, 99
HpyCH4III	ACNGT	3 cut(s)	209, 272, 618
HpyCH4IV	ACGT	5 cut(s)	94, 180, 303, 357, 582
HpyCH4V	TGCA	2 cut(s)	547, 654
HpyF10VI	GCNNNNNNNGC	1 cut(s)	651
HpyF3I	CTNAG	4 cut(s)	60, 218, 335, 470
HpySE526I	ACGT	5 cut(s)	94, 180, 303, 357, 582
Hsp92I	GRCGYC	2 cut(s)	94, 303
Hsp92II	CATG	2 cut(s)	311, 417
Ksp22I	TGATCA	2 cut(s)	241, 430
Kzo9I	GATC	5 cut(s)	101, 241, 362, 396, 430
LmnI	GCTCC	2 cut(s)	291, 662
LpnPI	CCDG	4 cut(s)	108, 212, 246, 645
LweI	GCATC	1 cut(s)	534
MaeI	CTAG	2 cut(s)	167, 666
MaeII	ACGT	5 cut(s)	94, 180, 303, 357, 582
MaeIII	GTNAC	2 cut(s)	345, 535
MalI	GATC	5 cut(s)	103, 243, 364, 398, 432
MboI	GATC	5 cut(s)	101, 241, 362, 396, 430
MboII	GAAGA	1 cut(s)	59
MflI	RGATCY	2 cut(s)	362, 396
MhlI	GDGCHC	2 cut(s)	13, 592
MluCI	AATT	1 cut(s)	602
MlyI	GAGTC	1 cut(s)	683
Mph1103I	ATGCAT	1 cut(s)	549
MseI	TTAA	1 cut(s)	459
MspI	CCGG	1 cut(s)	233
MvnI	CGCG	1 cut(s)	25
MwoI	GCNNNNNNNGC	1 cut(s)	651
NdeI	CATATG	1 cut(s)	549
NdeII	GATC	5 cut(s)	101, 241, 362, 396, 430
NlaIII	CATG	2 cut(s)	311, 417
NlaIV	GGNNCC	3 cut(s)	155, 231, 388
NmuCI	GTSAC	1 cut(s)	535
NsiI	ATGCAT	1 cut(s)	549
PcsI	WCGNNNNNNNCGW	1 cut(s)	110
PfeI	GAWTC	4 cut(s)	29, 223, 502, 566
PleI	GAGTC	1 cut(s)	682
PpsI	GAGTC	1 cut(s)	682
PspN4I	GGNNCC	3 cut(s)	155, 231, 388
PstNI	CAGNNNCTG	1 cut(s)	217
PsuI	RGATCY	2 cut(s)	362, 396
RsaI	GTAC	2 cut(s)	326, 443
RsaNI	GTAC	2 cut(s)	325, 442
SaqAI	TTAA	1 cut(s)	459
Sau3AI	GATC	5 cut(s)	101, 241, 362, 396, 430
SchI	GAGTC	1 cut(s)	683
SduI	GDGCHC	2 cut(s)	13, 592
SfaNI	GCATC	1 cut(s)	534
Sse9I	AATT	1 cut(s)	602
SsiI	CCGC	1 cut(s)	25
SspMI	CTAG	2 cut(s)	167, 666
TaaI	ACNGT	3 cut(s)	209, 272, 618
TaiI	ACGT	5 cut(s)	97, 183, 306, 360, 585
TaqI	TCGA	6 cut(s)	84, 91, 104, 351, 405, 621
TasI	AATT	1 cut(s)	602
TatI	WGTACW	1 cut(s)	441
TfiI	GAWTC	4 cut(s)	29, 223, 502, 566
Tru1I	TTAA	1 cut(s)	459
Tru9I	TTAA	1 cut(s)	459
TscAI	CASTG	2 cut(s)	127, 208
TseFI	GTSAC	1 cut(s)	535
Tsp45I	GTSAC	1 cut(s)	535
TspGWI	ACGGA	1 cut(s)	523
TspRI	CASTG	2 cut(s)	127, 208
XspI	CTAG	2 cut(s)	167, 666
ZraI	GACGTC	2 cut(s)	95, 304
Zsp2I	ATGCAT	1 cut(s)	549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.