Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000303.1

Orthogroup ID

OG0002071

Physical Location & Seq

Genomic Coordinates Forward (+)

84136 .. 85054

Gene Structure 919 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000303.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

atggctcgtccatcacgaaaatctctctctaccttctactcctatccctcttctcagaactcccaattatctcaatccctcagagacctcaaacccaaccccaaccgtccatccacctcgctccaatcaaagtgttatgttcactttgataagttggtgtactacaacaagaacatcaaagggaagctgagtttcggctctgtttccgatgtgtcggggattcaagccaagaagctatttatttgggtttctgtgacggggatgcatatggaacaagggtctgattcagttgagttttacgttggggctctgtccgagaaatttcctgctaaacagttcgaggatattcctcttctggagcttctgatgctatcttggcgctgcgcctggctgcgcgtcagcgatgatctgggggtgagctggggctcaggcggtagcctgcttggctgtgttcccgtaggtcactcctttggcgggagttggtaccgctggctgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF538

Protein Analysis

165

Amino Acids

18.5

Weight (kDa)

9.3

Isoelectric Point (pI)

51.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55265
fragaria_vesca	FvH4_3g44990 FvH4_3g45000
malus_domestica	MD03G1007700.v1.1 MD11G1010900.v1.1
prunus_persica	Prupe.6G009400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0081761 RchiOBHm_Chr5g0081931 RchiOBHm_Chr5g0081981 RchiOBHm_Chr5g0082001 RchiOBHm_Chr5g0082141 RchiOBHm_Chr5g0082171 RchiOBHm_Chr5g0082211 RchiOBHm_Chr5g0082231 RchiOBHm_Chr5g0082391 RchiOBHm_Chr5g0082501 RchiOBHm_Chr5g0082531 RchiOBHm_Chr5g0082751 RchiOBHm_Chr5g0082781
rosa_multiflora	Rmu_sc0000303.1_g000015 Rmu_sc0001381.1_g000025 Rmu_sc0001687.1_g000005 Rmu_sc0001687.1_g000012 Rmu_sc0001687.1_g000036 Rmu_sc0002723.1_g000041 Rmu_sc0006948.1_g000007
rosa_roxburghii	Rroxscaffold_1G00001680 Rroxscaffold_1G00001850
rosa_rugosa	Rorug03G0305700.1 Rorug05G0478100 Rorug05G0478700 Rorug05G0479300 Rorug05G0479500
rosa_samantha	Rh5BG554600 Rh5BG556100 Rh5BG556700 Rh5DG564300 Rh5DG564600 Rh5DG565400 Rh5DG565500
rosa_wichuraiana	Rw0G009110 Rw0G019550 Rw5G049440 Rw5G049550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	483
AccB1I	GGYRCC	1 cut(s)	483
AccII	CGCG	1 cut(s)	396
AciI	CCGC	3 cut(s)	432, 474, 487
AcsI	RAATTY	1 cut(s)	320
AfaI	GTAC	2 cut(s)	161, 485
AfiI	CCNNNNNNNGG	1 cut(s)	474
AgsI	TTSAA	1 cut(s)	224
AjnI	CCWGG	1 cut(s)	386
AluBI	AGCT	4 cut(s)	187, 235, 361, 420
AluI	AGCT	4 cut(s)	187, 235, 361, 420
Alw26I	GTCTC	1 cut(s)	78
ApeKI	GCWGC	2 cut(s)	381, 391
ApoI	RAATTY	1 cut(s)	320
Asp718I	GGTACC	1 cut(s)	483
AspLEI	GCGC	3 cut(s)	381, 386, 396
AsuHPI	GGTGA	1 cut(s)	427
BanI	GGYRCC	1 cut(s)	483
BanII	GRGCYC	2 cut(s)	310, 428
BbvI	GCAGC	2 cut(s)	368, 378
BccI	CCATC	2 cut(s)	19, 118
BciT130I	CCWGG	1 cut(s)	388
BcoDI	GTCTC	1 cut(s)	78
BfmI	CTRYAG	1 cut(s)	494
BfoI	RGCGCY	1 cut(s)	382
BglI	GCCNNNNNGGC	1 cut(s)	444
BisI	GCNGC	2 cut(s)	382, 392
BlsI	GCNGC	2 cut(s)	383, 393
Bme1390I	CCNGG	1 cut(s)	388
BmiI	GGNNCC	1 cut(s)	485
BmrFI	CCNGG	1 cut(s)	388
BmsI	GCATC	2 cut(s)	252, 357
BpmI	CTGGAG	1 cut(s)	377
Bpu10I	CCTNAGC	1 cut(s)	427
BsaI	GGTCTC	1 cut(s)	78
Bsc4I	CCNNNNNNNGG	1 cut(s)	474
BseBI	CCWGG	1 cut(s)	388
BseGI	GGATG	2 cut(s)	110, 267
BseLI	CCNNNNNNNGG	1 cut(s)	474
BseMII	CTCAG	4 cut(s)	68, 94, 179, 441
BseXI	GCAGC	2 cut(s)	368, 378
BseYI	CCCAGC	1 cut(s)	420
Bsh1236I	CGCG	1 cut(s)	396
BshNI	GGYRCC	1 cut(s)	483
BslI	CCNNNNNNNGG	1 cut(s)	474
BsmAI	GTCTC	1 cut(s)	78
Bso31I	GGTCTC	1 cut(s)	78
Bsp1286I	GDGCHC	2 cut(s)	310, 428
Bsp143I	GATC	1 cut(s)	406
BspACI	CCGC	3 cut(s)	432, 474, 487
BspCNI	CTCAG	4 cut(s)	67, 93, 180, 440
BspFNI	CGCG	1 cut(s)	396
BspLI	GGNNCC	1 cut(s)	485
BspT107I	GGYRCC	1 cut(s)	483
BspTNI	GGTCTC	1 cut(s)	78
BssMI	GATC	1 cut(s)	406
Bst2UI	CCWGG	1 cut(s)	388
Bst4CI	ACNGT	2 cut(s)	107, 336
Bst6I	CTCTTC	2 cut(s)	55, 357
BstC8I	GCNNGC	2 cut(s)	440, 491
BstDEI	CTNAG	4 cut(s)	54, 80, 188, 427
BstF5I	GGATG	2 cut(s)	110, 267
BstFNI	CGCG	1 cut(s)	396
BstH2I	RGCGCY	1 cut(s)	382
BstHHI	GCGC	3 cut(s)	381, 386, 396
BstKTI	GATC	1 cut(s)	409
BstMAI	GTCTC	1 cut(s)	78
BstMBI	GATC	1 cut(s)	406
BstMWI	GCNNNNNNNGC	3 cut(s)	367, 376, 444
BstNI	CCWGG	1 cut(s)	388
BstSCI	CCNGG	1 cut(s)	386
BstSFI	CTRYAG	1 cut(s)	494
BstUI	CGCG	1 cut(s)	396
BstV1I	GCAGC	2 cut(s)	368, 378
BtgZI	GCGATG	1 cut(s)	417
BtsCI	GGATG	2 cut(s)	110, 267
Cac8I	GCNNGC	2 cut(s)	440, 491
CfoI	GCGC	3 cut(s)	381, 386, 396
CseI	GACGC	1 cut(s)	385
Csp6I	GTAC	2 cut(s)	160, 484
CviQI	GTAC	2 cut(s)	160, 484
DdeI	CTNAG	4 cut(s)	54, 80, 188, 427
DpnI	GATC	1 cut(s)	408
DpnII	GATC	1 cut(s)	406
Eam1104I	CTCTTC	2 cut(s)	55, 357
EarI	CTCTTC	2 cut(s)	55, 357
Eco24I	GRGCYC	2 cut(s)	310, 428
Eco31I	GGTCTC	1 cut(s)	78
EcoRII	CCWGG	1 cut(s)	386
EcoT22I	ATGCAT	1 cut(s)	267
EcoT38I	GRGCYC	2 cut(s)	310, 428
FaiI	YATR	3 cut(s)	138, 267, 269
FauI	CCCGC	1 cut(s)	467
FauNDI	CATATG	1 cut(s)	267
Fnu4HI	GCNGC	2 cut(s)	382, 392
FokI	GGATG	2 cut(s)	97, 274
FriOI	GRGCYC	2 cut(s)	310, 428
Fsp4HI	GCNGC	2 cut(s)	382, 392
GlaI	GCGC	3 cut(s)	380, 385, 395
GluI	GCNGC	2 cut(s)	382, 392
GsaI	CCCAGC	1 cut(s)	424
GsuI	CTGGAG	1 cut(s)	377
HaeII	RGCGCY	1 cut(s)	382
HgaI	GACGC	1 cut(s)	385
HhaI	GCGC	3 cut(s)	381, 386, 396
Hin6I	GCGC	3 cut(s)	379, 384, 394
HinP1I	GCGC	3 cut(s)	379, 384, 394
HinfI	GANTC	2 cut(s)	220, 284
HphI	GGTGA	1 cut(s)	427
Hpy166II	GTNNAC	2 cut(s)	142, 160
Hpy188I	TCNGA	6 cut(s)	57, 83, 208, 283, 316, 366
Hpy188III	TCNNGA	2 cut(s)	15, 356
Hpy8I	GTNNAC	2 cut(s)	142, 160
HpyAV	CCTTC	1 cut(s)	43
HpyCH4III	ACNGT	2 cut(s)	107, 336
HpyCH4IV	ACGT	1 cut(s)	300
HpyCH4V	TGCA	1 cut(s)	265
HpyF10VI	GCNNNNNNNGC	3 cut(s)	367, 376, 444
HpyF3I	CTNAG	4 cut(s)	54, 80, 188, 427
HpySE526I	ACGT	1 cut(s)	300
HspAI	GCGC	3 cut(s)	379, 384, 394
KpnI	GGTACC	1 cut(s)	487
Kzo9I	GATC	1 cut(s)	406
LmnI	GCTCC	2 cut(s)	126, 358
LpnPI	CCDG	9 cut(s)	339, 341, 373, 395, 400, 406, 414, 452, 475
Lsp1109I	GCAGC	2 cut(s)	368, 378
LweI	GCATC	2 cut(s)	252, 357
MaeII	ACGT	1 cut(s)	300
MaeIII	GTNAC	2 cut(s)	253, 461
MalI	GATC	1 cut(s)	408
MboI	GATC	1 cut(s)	406
MboII	GAAGA	2 cut(s)	42, 344
MhlI	GDGCHC	2 cut(s)	310, 428
MluCI	AATT	2 cut(s)	65, 320
MnlI	CCTC	6 cut(s)	58, 89, 98, 127, 334, 360
Mph1103I	ATGCAT	1 cut(s)	267
MspA1I	CMGCKG	1 cut(s)	489
MspR9I	CCNGG	1 cut(s)	388
MteI	GCGCNGCGC	1 cut(s)	382
MvaI	CCWGG	1 cut(s)	388
MvnI	CGCG	1 cut(s)	396
MwoI	GCNNNNNNNGC	3 cut(s)	367, 376, 444
NdeI	CATATG	1 cut(s)	267
NdeII	GATC	1 cut(s)	406
NlaIV	GGNNCC	1 cut(s)	485
NmuCI	GTSAC	2 cut(s)	253, 461
NsiI	ATGCAT	1 cut(s)	267
PcsI	WCGNNNNNNNCGW	1 cut(s)	13
PfeI	GAWTC	2 cut(s)	220, 284
PkrI	GCNGC	2 cut(s)	383, 393
Psp6I	CCWGG	1 cut(s)	386
PspFI	CCCAGC	1 cut(s)	420
PspGI	CCWGG	1 cut(s)	386
PspN4I	GGNNCC	1 cut(s)	485
RsaI	GTAC	2 cut(s)	161, 485
RsaNI	GTAC	2 cut(s)	160, 484
SatI	GCNGC	2 cut(s)	382, 392
Sau3AI	GATC	1 cut(s)	406
ScrFI	CCNGG	1 cut(s)	388
SduI	GDGCHC	2 cut(s)	310, 428
SetI	ASST	9 cut(s)	35, 90, 119, 189, 237, 303, 363, 422, 463
SfaNI	GCATC	2 cut(s)	252, 357
SfcI	CTRYAG	1 cut(s)	494
Sse9I	AATT	2 cut(s)	65, 320
SsiI	CCGC	3 cut(s)	432, 474, 487
StyD4I	CCNGG	1 cut(s)	386
TaaI	ACNGT	2 cut(s)	107, 336
TaiI	ACGT	1 cut(s)	303
TaqI	TCGA	1 cut(s)	339
TasI	AATT	2 cut(s)	65, 320
TatI	WGTACW	1 cut(s)	159
TfiI	GAWTC	2 cut(s)	220, 284
TseFI	GTSAC	2 cut(s)	253, 461
TseI	GCWGC	2 cut(s)	381, 391
Tsp45I	GTSAC	2 cut(s)	253, 461
XapI	RAATTY	1 cut(s)	320
Zsp2I	ATGCAT	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.