Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001687.1

Orthogroup ID

OG0002071

Physical Location & Seq

Genomic Coordinates Forward (+)

228925 .. 229455

Gene Structure 531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001687.1_g000036.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

atggcctcatccatcacccaaatctctctcttccttctattcctaactctcttctcagaaacccaattatctcaatccctcagagaccccaaacccaaccccaaccccaaccccaaccgtccatccacctcgctccaatcaatcacagacgtccatgacctcctccccaagtacggcctcccaaggggtctgttacccgacaacgtaagatcctacactctctccgacgatggaaccttcgagatctatctcgaaaacccatgttatgttcactttgatcagttggtatactacaacaagaacatcaaagggaagctgagtttcggctctgtttccgatgtgtcggggattcaagccaagaagctatttgtttgggtttccgtgacggggatgcatatggagcaagggtctgattcagttgagttttacgttggggctctgtccgagaaattgcctgctaaacagttcgaggatgttcctgtatgtaagagcaaggcttgccgaggaggagctagtgttgagtcaatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF538

Protein Analysis

176

Amino Acids

19.5

Weight (kDa)

5.89

Isoelectric Point (pI)

43.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55265
fragaria_vesca	FvH4_3g44990 FvH4_3g45000
malus_domestica	MD03G1007700.v1.1 MD11G1010900.v1.1
prunus_persica	Prupe.6G009400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0081761 RchiOBHm_Chr5g0081931 RchiOBHm_Chr5g0081981 RchiOBHm_Chr5g0082001 RchiOBHm_Chr5g0082141 RchiOBHm_Chr5g0082171 RchiOBHm_Chr5g0082211 RchiOBHm_Chr5g0082231 RchiOBHm_Chr5g0082391 RchiOBHm_Chr5g0082501 RchiOBHm_Chr5g0082531 RchiOBHm_Chr5g0082751 RchiOBHm_Chr5g0082781
rosa_multiflora	Rmu_sc0000303.1_g000015 Rmu_sc0001381.1_g000025 Rmu_sc0001687.1_g000005 Rmu_sc0001687.1_g000012 Rmu_sc0001687.1_g000036 Rmu_sc0002723.1_g000041 Rmu_sc0006948.1_g000007
rosa_roxburghii	Rroxscaffold_1G00001680 Rroxscaffold_1G00001850
rosa_rugosa	Rorug03G0305700.1 Rorug05G0478100 Rorug05G0478700 Rorug05G0479300 Rorug05G0479500
rosa_samantha	Rh5BG554600 Rh5BG556100 Rh5BG556700 Rh5DG564300 Rh5DG564600 Rh5DG565400 Rh5DG565500
rosa_wichuraiana	Rw0G009110 Rw0G019550 Rw5G049440 Rw5G049550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	153
AccI	GTMKAC	1 cut(s)	288
AclWI	GGATC	1 cut(s)	204
AcyI	GRCGYC	1 cut(s)	150
AfaI	GTAC	1 cut(s)	173
AfiI	CCNNNNNNNGG	3 cut(s)	173, 184, 387
AgsI	TTSAA	1 cut(s)	353
AluBI	AGCT	3 cut(s)	316, 364, 512
AluI	AGCT	3 cut(s)	316, 364, 512
Alw26I	GTCTC	1 cut(s)	78
AlwI	GGATC	1 cut(s)	204
AoxI	GGCC	2 cut(s)	3, 175
AsuHPI	GGTGA	1 cut(s)	7
BanII	GRGCYC	1 cut(s)	439
BccI	CCATC	3 cut(s)	20, 130, 224
BceAI	ACGGC	1 cut(s)	190
BclI	TGATCA	1 cut(s)	277
BcoDI	GTCTC	1 cut(s)	78
BfaI	CTAG	1 cut(s)	513
BglII	AGATCT	1 cut(s)	243
BmiI	GGNNCC	1 cut(s)	235
BmsI	GCATC	1 cut(s)	381
BsaHI	GRCGYC	1 cut(s)	150
BsaI	GGTCTC	1 cut(s)	78
BsaJI	CCNNGG	2 cut(s)	182, 502
BsaXI	ACNNNNNCTCC	6 cut(s)	206, 236, 392, 422, 501, 531
Bsc4I	CCNNNNNNNGG	3 cut(s)	173, 184, 387
BseDI	CCNNGG	2 cut(s)	182, 502
BseGI	GGATG	4 cut(s)	8, 122, 396, 478
BseLI	CCNNNNNNNGG	3 cut(s)	173, 184, 387
BseMII	CTCAG	3 cut(s)	69, 94, 308
BseRI	GAGGAG	3 cut(s)	152, 519, 522
BshFI	GGCC	2 cut(s)	5, 177
BslI	CCNNNNNNNGG	3 cut(s)	173, 184, 387
BsmAI	GTCTC	1 cut(s)	78
BsnI	GGCC	2 cut(s)	5, 177
Bso31I	GGTCTC	1 cut(s)	78
Bsp1286I	GDGCHC	1 cut(s)	439
Bsp143I	GATC	3 cut(s)	209, 243, 277
BspANI	GGCC	2 cut(s)	5, 177
BspCNI	CTCAG	3 cut(s)	68, 93, 309
BspLI	GGNNCC	1 cut(s)	235
BspPI	GGATC	1 cut(s)	204
BspTNI	GGTCTC	1 cut(s)	78
BssECI	CCNNGG	2 cut(s)	182, 502
BssMI	GATC	3 cut(s)	209, 243, 277
BssNAI	GTATAC	1 cut(s)	289
BssNI	GRCGYC	1 cut(s)	150
BssT1I	CCWWGG	1 cut(s)	182
Bst1107I	GTATAC	1 cut(s)	289
Bst4CI	ACNGT	2 cut(s)	119, 465
Bst6I	CTCTTC	2 cut(s)	35, 56
BstACI	GRCGYC	1 cut(s)	150
BstAPI	GCANNNNNTGC	1 cut(s)	498
BstC8I	GCNNGC	2 cut(s)	456, 499
BstDEI	CTNAG	3 cut(s)	55, 80, 317
BstF5I	GGATG	4 cut(s)	8, 122, 396, 478
BstKTI	GATC	3 cut(s)	212, 246, 280
BstMAI	GTCTC	1 cut(s)	78
BstMBI	GATC	3 cut(s)	209, 243, 277
BstMWI	GCNNNNNNNGC	2 cut(s)	400, 498
BstX2I	RGATCY	2 cut(s)	209, 243
BstYI	RGATCY	2 cut(s)	209, 243
BstZ17I	GTATAC	1 cut(s)	289
BsuRI	GGCC	2 cut(s)	5, 177
BtsCI	GGATG	4 cut(s)	8, 122, 396, 478
Cac8I	GCNNGC	2 cut(s)	456, 499
Csp6I	GTAC	1 cut(s)	172
CviAII	CATG	2 cut(s)	155, 261
CviJI	RGCY	9 cut(s)	5, 177, 316, 327, 356, 364, 437, 497, 512
CviKI_1	RGCY	9 cut(s)	5, 177, 316, 327, 356, 364, 437, 497, 512
CviQI	GTAC	1 cut(s)	172
DdeI	CTNAG	3 cut(s)	55, 80, 317
DpnI	GATC	3 cut(s)	211, 245, 279
DpnII	GATC	3 cut(s)	209, 243, 277
Eam1104I	CTCTTC	2 cut(s)	35, 56
EarI	CTCTTC	2 cut(s)	35, 56
Eco130I	CCWWGG	1 cut(s)	182
Eco24I	GRGCYC	1 cut(s)	439
Eco31I	GGTCTC	1 cut(s)	78
EcoT14I	CCWWGG	1 cut(s)	182
EcoT22I	ATGCAT	1 cut(s)	396
EcoT38I	GRGCYC	1 cut(s)	439
ErhI	CCWWGG	1 cut(s)	182
FaeI	CATG	2 cut(s)	158, 264
FaiI	YATR	7 cut(s)	156, 262, 267, 289, 396, 398, 484
FatI	CATG	2 cut(s)	154, 260
FauNDI	CATATG	1 cut(s)	396
FbaI	TGATCA	1 cut(s)	277
FblI	GTMKAC	1 cut(s)	288
FokI	GGATG	3 cut(s)	109, 403, 485
FriOI	GRGCYC	1 cut(s)	439
FspBI	CTAG	1 cut(s)	513
HaeIII	GGCC	2 cut(s)	5, 177
Hin1I	GRCGYC	1 cut(s)	150
Hin1II	CATG	2 cut(s)	158, 264
HinfI	GANTC	3 cut(s)	349, 413, 521
HphI	GGTGA	1 cut(s)	7
Hpy166II	GTNNAC	2 cut(s)	271, 289
Hpy188I	TCNGA	6 cut(s)	58, 83, 226, 337, 412, 445
Hpy188III	TCNNGA	2 cut(s)	241, 251
Hpy8I	GTNNAC	2 cut(s)	271, 289
Hpy99I	CGWCG	1 cut(s)	230
HpyAV	CCTTC	2 cut(s)	44, 247
HpyCH4III	ACNGT	2 cut(s)	119, 465
HpyCH4IV	ACGT	3 cut(s)	150, 204, 429
HpyCH4V	TGCA	1 cut(s)	394
HpyF10VI	GCNNNNNNNGC	2 cut(s)	400, 498
HpyF3I	CTNAG	3 cut(s)	55, 80, 317
HpySE526I	ACGT	3 cut(s)	150, 204, 429
Hsp92I	GRCGYC	1 cut(s)	150
Hsp92II	CATG	2 cut(s)	158, 264
Ksp22I	TGATCA	1 cut(s)	277
Kzo9I	GATC	3 cut(s)	209, 243, 277
LmnI	GCTCC	3 cut(s)	138, 400, 509
LpnPI	CCDG	2 cut(s)	468, 492
LweI	GCATC	1 cut(s)	381
MaeI	CTAG	1 cut(s)	513
MaeII	ACGT	3 cut(s)	150, 204, 429
MaeIII	GTNAC	2 cut(s)	192, 382
MalI	GATC	3 cut(s)	211, 245, 279
MboI	GATC	3 cut(s)	209, 243, 277
MboII	GAAGA	2 cut(s)	22, 43
MflI	RGATCY	2 cut(s)	209, 243
MhlI	GDGCHC	1 cut(s)	439
MluCI	AATT	2 cut(s)	65, 449
MlyI	GAGTC	1 cut(s)	530
MmeI	TCCRAC	1 cut(s)	249
MnlI	CCTC	9 cut(s)	16, 89, 139, 170, 173, 188, 463, 497, 500
Mph1103I	ATGCAT	1 cut(s)	396
MwoI	GCNNNNNNNGC	2 cut(s)	400, 498
NdeI	CATATG	1 cut(s)	396
NdeII	GATC	3 cut(s)	209, 243, 277
NlaIII	CATG	2 cut(s)	158, 264
NlaIV	GGNNCC	1 cut(s)	235
NmeAIII	GCCGAG	1 cut(s)	527
NmuCI	GTSAC	1 cut(s)	382
NsiI	ATGCAT	1 cut(s)	396
PfeI	GAWTC	2 cut(s)	349, 413
PleI	GAGTC	1 cut(s)	529
PpsI	GAGTC	1 cut(s)	529
PspN4I	GGNNCC	1 cut(s)	235
PsuI	RGATCY	2 cut(s)	209, 243
RsaI	GTAC	1 cut(s)	173
RsaNI	GTAC	1 cut(s)	172
Sau3AI	GATC	3 cut(s)	209, 243, 277
SchI	GAGTC	1 cut(s)	530
SduI	GDGCHC	1 cut(s)	439
SetI	ASST	9 cut(s)	131, 153, 162, 207, 239, 318, 366, 432, 514
SfaNI	GCATC	1 cut(s)	381
Sse9I	AATT	2 cut(s)	65, 449
SspMI	CTAG	1 cut(s)	513
StyI	CCWWGG	1 cut(s)	182
TaaI	ACNGT	2 cut(s)	119, 465
TaiI	ACGT	3 cut(s)	153, 207, 432
TaqI	TCGA	3 cut(s)	240, 252, 468
TasI	AATT	2 cut(s)	65, 449
TfiI	GAWTC	2 cut(s)	349, 413
TseFI	GTSAC	1 cut(s)	382
Tsp45I	GTSAC	1 cut(s)	382
TspGWI	ACGGA	1 cut(s)	370
XmiI	GTMKAC	1 cut(s)	288
XspI	CTAG	1 cut(s)	513
ZraI	GACGTC	1 cut(s)	151
Zsp2I	ATGCAT	1 cut(s)	396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.