Rorug05G0479300

Protein of unknown function, DUF538

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0002071
Physical Location & Seq
Forward (+)
66020643 .. 66021356
714 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0479300.1

Sequence Viewer

Length: 714 bp
ATGGCAGTCAACGTTAGCATGCGAGAGACAACATTGGTGAGGCCAGCAGCGGAGACTCCTGGGCTGTCACTTTGGATCTCAAACTTAGACATGGTGAAGACCAACACTCACACTCCTCTTGTTTATTTCTACAAGCCAAAAAACATAGCTGGTGCAGGCGAGGACAACAATTTCTTTGACATGCACGTACTGAAGGACGCGCTCAGCAAGGCCCTCGTGCCCTTTTACCCTTTCGCCGGCCGCCTACGGCAGAAAAAGGACGAAGGAGAGAATGGCCGTATCGAAATCGATTGCAATGCAGAGGGAGCCTTGTTTGCTGTGGCCGATAGCAGCTCTTGCATTAGTGATTTTGGTGATTTTGCACCCACTCCCGAATTCGGGAGAGGGCTCATCCCCATAGTTGATTATTCAGCTGGGATATCTTCTTTTCCCTTGTTGCTGGTTCAGATCACATACTTGAAATGTGGTGGAGTGGCACTTGGTCTTCGCGTGGACCCTCGTGTATCAGATGGATTATCTACTTTCCACTTCATAAATACATGGTCTGATATGGCTTGTGGTCTCGAGGTTGCAATTCGGCCAAGCATGGACAGAACGATACTTCGTGCCCGAGACCCACCTCAGCCTTTACCCGACCACATTCACCACATTGCATACCCTCCTCGGAATAAGCATGAGAGCACTTCAGCAACAATTAACGGTTACAAAATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF538

Protein Analysis

237

Amino Acids

26.05

Weight (kDa)

6.15

Isoelectric Point (pI)

41.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 4 - 220 1.2e-48 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 200, 489
AciI CCGC 2 cut(s) 50, 241
AclI AACGTT 1 cut(s) 12
AclWI GGATC 1 cut(s) 83
AcoI YGGCCR 4 cut(s) 238, 274, 321, 578
AcsI RAATTY 2 cut(s) 374, 708
AcuI CTGAAG 2 cut(s) 212, 669
AfaI GTAC 1 cut(s) 189
AfiI CCNNNNNNNGG 3 cut(s) 236, 377, 378
AgsI TTSAA 1 cut(s) 460
AjnI CCWGG 1 cut(s) 58
AluBI AGCT 3 cut(s) 149, 333, 413
AluI AGCT 3 cut(s) 149, 333, 413
Alw21I GWGCWC 1 cut(s) 683
Alw26I GTCTC 4 cut(s) 20, 47, 566, 606
AlwI GGATC 1 cut(s) 83
Ama87I CYCGRG 2 cut(s) 563, 609
AoxI GGCC 6 cut(s) 41, 210, 238, 274, 321, 578
ApeKI GCWGC 2 cut(s) 47, 330
ApoI RAATTY 2 cut(s) 374, 708
AspLEI GCGC 1 cut(s) 202
AspS9I GGNCC 2 cut(s) 211, 493
AsuHPI GGTGA 4 cut(s) 49, 106, 365, 635
AvaI CYCGRG 2 cut(s) 563, 609
AvaII GGWCC 1 cut(s) 493
BaeGI GKGCMC 2 cut(s) 222, 610
BanII GRGCYC 1 cut(s) 390
BauI CACGAG 2 cut(s) 215, 498
BbsI GAAGAC 2 cut(s) 104, 476
Bbv12I GWGCWC 1 cut(s) 683
BbvCI CCTCAGC 1 cut(s) 621
BbvI GCAGC 2 cut(s) 59, 342
BccI CCATC 1 cut(s) 503
BceAI ACGGC 2 cut(s) 261, 263
BcgI CGANNNNNNTGC 4 cut(s) 196, 230, 278, 312
BciT130I CCWGG 1 cut(s) 60
BcoDI GTCTC 4 cut(s) 20, 47, 566, 606
BisI GCNGC 3 cut(s) 48, 241, 331
BlpI GCTNAGC 1 cut(s) 203
BlsI GCNGC 3 cut(s) 49, 242, 332
Bme1390I CCNGG 1 cut(s) 60
Bme18I GGWCC 1 cut(s) 493
BmeT110I CYCGRG 2 cut(s) 563, 609
BmgT120I GGNCC 2 cut(s) 211, 493
BmiI GGNNCC 2 cut(s) 307, 495
BmrFI CCNGG 1 cut(s) 60
BpiI GAAGAC 2 cut(s) 104, 476
Bpu10I CCTNAGC 1 cut(s) 621
Bpu1102I GCTNAGC 1 cut(s) 203
Bsa29I ATCGAT 1 cut(s) 288
BsaAI YACGTR 1 cut(s) 187
BsaI GGTCTC 2 cut(s) 566, 606
BsaJI CCNNGG 2 cut(s) 59, 662
BsaXI ACNNNNNCTCC 2 cut(s) 97, 127
Bsc4I CCNNNNNNNGG 3 cut(s) 236, 377, 378
Bse118I RCCGGY 1 cut(s) 236
Bse3DI GCAATG 2 cut(s) 301, 648
BseBI CCWGG 1 cut(s) 60
BseCI ATCGAT 1 cut(s) 288
BseDI CCNNGG 2 cut(s) 59, 662
BseGI GGATG 1 cut(s) 390
BseLI CCNNNNNNNGG 3 cut(s) 236, 377, 378
BseMI GCAATG 2 cut(s) 301, 648
BseMII CTCAG 2 cut(s) 217, 635
BseRI GAGGAG 2 cut(s) 105, 651
BseSI GKGCMC 2 cut(s) 222, 610
BseX3I CGGCCG 1 cut(s) 238
BseXI GCAGC 2 cut(s) 59, 342
BseYI CCCAGC 1 cut(s) 413
BsgI GTGCAG 1 cut(s) 174
Bsh1236I CGCG 2 cut(s) 200, 489
Bsh1285I CGRYCG 1 cut(s) 241
BshFI GGCC 6 cut(s) 43, 212, 240, 276, 323, 580
BshVI ATCGAT 1 cut(s) 288
BsiEI CGRYCG 1 cut(s) 241
BsiHKAI GWGCWC 1 cut(s) 683
BsiHKCI CYCGRG 2 cut(s) 563, 609
BsiSI CCGG 1 cut(s) 237
BslI CCNNNNNNNGG 3 cut(s) 236, 377, 378
BsmAI GTCTC 4 cut(s) 20, 47, 566, 606
BsnI GGCC 6 cut(s) 43, 212, 240, 276, 323, 580
Bso31I GGTCTC 2 cut(s) 566, 606
BsoBI CYCGRG 2 cut(s) 563, 609
Bsp1286I GDGCHC 4 cut(s) 222, 390, 610, 683
Bsp143I GATC 2 cut(s) 75, 447
Bsp1720I GCTNAGC 1 cut(s) 203
BspACI CCGC 2 cut(s) 50, 241
BspANI GGCC 6 cut(s) 43, 212, 240, 276, 323, 580
BspCNI CTCAG 2 cut(s) 216, 634
BspDI ATCGAT 1 cut(s) 288
BspFNI CGCG 2 cut(s) 200, 489
BspLI GGNNCC 2 cut(s) 307, 495
BspPI GGATC 1 cut(s) 83
BspTNI GGTCTC 2 cut(s) 566, 606
BsrDI GCAATG 2 cut(s) 301, 648
BsrFI RCCGGY 1 cut(s) 236
BssAI RCCGGY 1 cut(s) 236
BssECI CCNNGG 2 cut(s) 59, 662
BssMI GATC 2 cut(s) 75, 447
BssSI CACGAG 2 cut(s) 215, 498
Bst2BI CACGAG 2 cut(s) 215, 498
Bst2UI CCWGG 1 cut(s) 60
Bst4CI ACNGT 1 cut(s) 701
BstAPI GCANNNNNTGC 1 cut(s) 336
BstBAI YACGTR 1 cut(s) 187
BstC8I GCNNGC 4 cut(s) 20, 45, 157, 238
BstDEI CTNAG 3 cut(s) 85, 203, 621
BstF5I GGATG 1 cut(s) 390
BstFNI CGCG 2 cut(s) 200, 489
BstHHI GCGC 1 cut(s) 202
BstKTI GATC 2 cut(s) 78, 450
BstMAI GTCTC 4 cut(s) 20, 47, 566, 606
BstMBI GATC 2 cut(s) 75, 447
BstMCI CGRYCG 1 cut(s) 241
BstMWI GCNNNNNNNGC 3 cut(s) 305, 314, 336
BstNI CCWGG 1 cut(s) 60
BstNSI RCATGY 2 cut(s) 22, 184
BstSCI CCNGG 1 cut(s) 58
BstSLI GKGCMC 2 cut(s) 222, 610
BstUI CGCG 2 cut(s) 200, 489
BstV1I GCAGC 2 cut(s) 59, 342
BstV2I GAAGAC 2 cut(s) 104, 476
BstX2I RGATCY 1 cut(s) 75
BstYI RGATCY 1 cut(s) 75
BstZI CGGCCG 1 cut(s) 238
Bsu15I ATCGAT 1 cut(s) 288
BsuRI GGCC 6 cut(s) 43, 212, 240, 276, 323, 580
BsuTUI ATCGAT 1 cut(s) 288
BtsCI GGATG 1 cut(s) 390
Cac8I GCNNGC 4 cut(s) 20, 45, 157, 238
CfoI GCGC 1 cut(s) 202
Cfr10I RCCGGY 1 cut(s) 236
Cfr13I GGNCC 2 cut(s) 211, 493
ClaI ATCGAT 1 cut(s) 288
CseI GACGC 1 cut(s) 206
Csp6I GTAC 1 cut(s) 188
CviAII CATG 6 cut(s) 19, 91, 181, 540, 586, 674
CviQI GTAC 1 cut(s) 188
DdeI CTNAG 3 cut(s) 85, 203, 621
DpnI GATC 2 cut(s) 77, 449
DpnII GATC 2 cut(s) 75, 447
EaeI YGGCCR 4 cut(s) 238, 274, 321, 578
EagI CGGCCG 1 cut(s) 238
EclXI CGGCCG 1 cut(s) 238
Eco24I GRGCYC 1 cut(s) 390
Eco31I GGTCTC 2 cut(s) 566, 606
Eco32I GATATC 1 cut(s) 420
Eco47I GGWCC 1 cut(s) 493
Eco52I CGGCCG 1 cut(s) 238
Eco57I CTGAAG 2 cut(s) 212, 669
Eco88I CYCGRG 2 cut(s) 563, 609
EcoO109I RGGNCCY 1 cut(s) 211
EcoRI GAATTC 1 cut(s) 374
EcoRII CCWGG 1 cut(s) 58
EcoRV GATATC 1 cut(s) 420
EcoT38I GRGCYC 1 cut(s) 390
FaeI CATG 6 cut(s) 22, 94, 184, 543, 589, 677
FatI CATG 6 cut(s) 18, 90, 180, 539, 585, 673
Fnu4HI GCNGC 3 cut(s) 48, 241, 331
FokI GGATG 1 cut(s) 377
FriOI GRGCYC 1 cut(s) 390
Fsp4HI GCNGC 3 cut(s) 48, 241, 331
GlaI GCGC 1 cut(s) 201
GluI GCNGC 3 cut(s) 48, 241, 331
GsaI CCCAGC 1 cut(s) 417
HaeIII GGCC 6 cut(s) 43, 212, 240, 276, 323, 580
HapII CCGG 1 cut(s) 237
HgaI GACGC 1 cut(s) 206
HhaI GCGC 1 cut(s) 202
Hin1II CATG 6 cut(s) 22, 94, 184, 543, 589, 677
Hin6I GCGC 1 cut(s) 200
HinP1I GCGC 1 cut(s) 200
HincII GTYRAC 1 cut(s) 10
HindII GTYRAC 1 cut(s) 10
HinfI GANTC 1 cut(s) 55
HpaII CCGG 1 cut(s) 237
HphI GGTGA 4 cut(s) 49, 106, 365, 635
Hpy166II GTNNAC 2 cut(s) 10, 493
Hpy188I TCNGA 4 cut(s) 447, 508, 547, 666
Hpy188III TCNNGA 3 cut(s) 371, 379, 563
Hpy8I GTNNAC 2 cut(s) 10, 493
HpyAV CCTTC 2 cut(s) 187, 257
HpyCH4III ACNGT 1 cut(s) 701
HpyCH4IV ACGT 2 cut(s) 12, 186
HpyCH4V TGCA 8 cut(s) 155, 184, 294, 299, 339, 362, 572, 653
HpyF10VI GCNNNNNNNGC 3 cut(s) 305, 314, 336
HpyF3I CTNAG 3 cut(s) 85, 203, 621
HpySE526I ACGT 2 cut(s) 12, 186
Hsp92II CATG 6 cut(s) 22, 94, 184, 543, 589, 677
HspAI GCGC 1 cut(s) 200
KroI GCCGGC 1 cut(s) 236
KroNI GCCGGC 1 cut(s) 238
Kzo9I GATC 2 cut(s) 75, 447
LmnI GCTCC 1 cut(s) 305
LpnPI CCDG 8 cut(s) 45, 57, 72, 135, 141, 250, 399, 425
Lsp1109I GCAGC 2 cut(s) 59, 342
MaeII ACGT 2 cut(s) 12, 186
MaeIII GTNAC 2 cut(s) 66, 701
MalI GATC 2 cut(s) 77, 449
MboI GATC 2 cut(s) 75, 447
MboII GAAGA 3 cut(s) 109, 414, 476
MflI RGATCY 1 cut(s) 75
MhlI GDGCHC 4 cut(s) 222, 390, 610, 683
MluCI AATT 5 cut(s) 169, 374, 573, 693, 708
MlyI GAGTC 1 cut(s) 49
MroNI GCCGGC 1 cut(s) 236
MseI TTAA 1 cut(s) 696
MspA1I CMGCKG 2 cut(s) 50, 413
MspI CCGG 1 cut(s) 237
MspR9I CCNGG 1 cut(s) 60
MvaI CCWGG 1 cut(s) 60
MvnI CGCG 2 cut(s) 200, 489
MwoI GCNNNNNNNGC 3 cut(s) 305, 314, 336
NaeI GCCGGC 1 cut(s) 238
NdeII GATC 2 cut(s) 75, 447
NgoMIV GCCGGC 1 cut(s) 236
NlaIII CATG 6 cut(s) 22, 94, 184, 543, 589, 677
NlaIV GGNNCC 2 cut(s) 307, 495
NmuCI GTSAC 1 cut(s) 66
NspI RCATGY 2 cut(s) 22, 184
PaeI GCATGC 1 cut(s) 22
PaeR7I CTCGAG 1 cut(s) 563
PdiI GCCGGC 1 cut(s) 238
PkrI GCNGC 3 cut(s) 49, 242, 332
PleI GAGTC 1 cut(s) 49
PpsI GAGTC 1 cut(s) 49
Ppu21I YACGTR 1 cut(s) 187
Psp1406I AACGTT 1 cut(s) 12
Psp6I CCWGG 1 cut(s) 58
PspFI CCCAGC 1 cut(s) 413
PspGI CCWGG 1 cut(s) 58
PspN4I GGNNCC 2 cut(s) 307, 495
PspPI GGNCC 2 cut(s) 211, 493
PsuI RGATCY 1 cut(s) 75
PvuII CAGCTG 1 cut(s) 413
RsaI GTAC 1 cut(s) 189
RsaNI GTAC 1 cut(s) 188
SaqAI TTAA 1 cut(s) 696
SatI GCNGC 3 cut(s) 48, 241, 331
Sau3AI GATC 2 cut(s) 75, 447
Sau96I GGNCC 2 cut(s) 211, 493
SchI GAGTC 1 cut(s) 49
ScrFI CCNGG 1 cut(s) 60
SduI GDGCHC 4 cut(s) 222, 390, 610, 683
SetI ASST 7 cut(s) 15, 151, 189, 335, 415, 570, 622
Sfr274I CTCGAG 1 cut(s) 563
SinI GGWCC 1 cut(s) 493
SlaI CTCGAG 1 cut(s) 563
SmlI CTYRAG 1 cut(s) 563
SmoI CTYRAG 1 cut(s) 563
SphI GCATGC 1 cut(s) 22
Sse9I AATT 5 cut(s) 169, 374, 573, 693, 708
SsiI CCGC 2 cut(s) 50, 241
StyD4I CCNGG 1 cut(s) 58
TaaI ACNGT 1 cut(s) 701
TaiI ACGT 2 cut(s) 15, 189
TaqI TCGA 3 cut(s) 282, 288, 564
TasI AATT 5 cut(s) 169, 374, 573, 693, 708
TauI GCSGC 1 cut(s) 243
Tru1I TTAA 1 cut(s) 696
Tru9I TTAA 1 cut(s) 696
TseFI GTSAC 1 cut(s) 66
TseI GCWGC 2 cut(s) 47, 330
Tsp45I GTSAC 1 cut(s) 66
TspDTI ATGAA 1 cut(s) 520
VpaK11BI GGWCC 1 cut(s) 493
XapI RAATTY 2 cut(s) 374, 708
XceI RCATGY 2 cut(s) 22, 184
XhoI CTCGAG 1 cut(s) 563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.