RchiOBHm_Chr5g0082391

Protein of unknown function, DUF538

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0002071
Physical Location & Seq
Forward (+)
88395718 .. 88398080
2363 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35660

Sequence Viewer

Length: 519 bp
ATGGCCTCAGCCGTCACCCAAATCTCTCTCTTCCTTCTACTCCTAACCCTCTTCTCAGAAACCCAATTATCTCAATCCCTCAGAGACCTCAAACCCAACCCCAACCGTCCATCCACCTCGCTCCAATCCATCACAGACGTCCATGACCTCCTCCCCAAGTACGGCCTCCCAAGGGGTCTGTTACCCGACAACGTAAGATCCTACACTCTCTCCGACGATGGAACCTTCGAGATCTATCTCGAAAACCCATGTTATGTTCACTTTGATCAGTTGGTGTACTACAGCAAGAACATCAAAGGGAAGCTGAGTTTCGGCTCTGTTTCCGATGTGTCGGGGATTCAAGCCAAGAAGCTATTTATTTGGGTTACCGTGACGGGGATGCATATGGAACAAGGGTCTGATTCAGTTGAGTTTTACGTTGGGGCTCTGTCCGAGAAATTGCCTGCTAAACAGTTCGAGGATATTCCTGTATGTAAGAGCAAGGCTTGCCGAGGAGGAGCTAGTGCTGAGTCAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF538

Protein Analysis

172

Amino Acids

19.02

Weight (kDa)

5.89

Isoelectric Point (pI)

38.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF538 PF04398 47 - 153 1.2e-31 Protein of unknown function, DUF538
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 141
AclWI GGATC 1 cut(s) 192
AcyI GRCGYC 1 cut(s) 138
AfaI GTAC 2 cut(s) 161, 278
AfiI CCNNNNNNNGG 3 cut(s) 161, 172, 375
AgsI TTSAA 1 cut(s) 341
AluBI AGCT 3 cut(s) 304, 352, 500
AluI AGCT 3 cut(s) 304, 352, 500
Alw26I GTCTC 1 cut(s) 78
AlwI GGATC 1 cut(s) 192
AoxI GGCC 2 cut(s) 3, 163
AsuHPI GGTGA 1 cut(s) 7
BanII GRGCYC 1 cut(s) 427
BbvCI CCTCAGC 1 cut(s) 7
BccI CCATC 3 cut(s) 118, 137, 212
BceAI ACGGC 1 cut(s) 178
BclI TGATCA 1 cut(s) 265
BcoDI GTCTC 1 cut(s) 78
BfaI CTAG 1 cut(s) 501
BfmI CTRYAG 1 cut(s) 280
BglII AGATCT 1 cut(s) 231
BmiI GGNNCC 1 cut(s) 223
BmsI GCATC 1 cut(s) 369
Bpu10I CCTNAGC 1 cut(s) 7
BsaHI GRCGYC 1 cut(s) 138
BsaI GGTCTC 1 cut(s) 78
BsaJI CCNNGG 2 cut(s) 170, 490
BsaXI ACNNNNNCTCC 2 cut(s) 194, 224
Bsc4I CCNNNNNNNGG 3 cut(s) 161, 172, 375
BseDI CCNNGG 2 cut(s) 170, 490
BseGI GGATG 2 cut(s) 110, 384
BseLI CCNNNNNNNGG 3 cut(s) 161, 172, 375
BseMII CTCAG 5 cut(s) 21, 69, 94, 296, 498
BseRI GAGGAG 3 cut(s) 140, 507, 510
BshFI GGCC 2 cut(s) 5, 165
BslI CCNNNNNNNGG 3 cut(s) 161, 172, 375
BsmAI GTCTC 1 cut(s) 78
BsnI GGCC 2 cut(s) 5, 165
Bso31I GGTCTC 1 cut(s) 78
Bsp1286I GDGCHC 1 cut(s) 427
Bsp143I GATC 3 cut(s) 197, 231, 265
BspANI GGCC 2 cut(s) 5, 165
BspCNI CTCAG 5 cut(s) 20, 68, 93, 297, 499
BspLI GGNNCC 1 cut(s) 223
BspPI GGATC 1 cut(s) 192
BspTNI GGTCTC 1 cut(s) 78
BssECI CCNNGG 2 cut(s) 170, 490
BssMI GATC 3 cut(s) 197, 231, 265
BssNI GRCGYC 1 cut(s) 138
BssT1I CCWWGG 1 cut(s) 170
Bst4CI ACNGT 3 cut(s) 107, 370, 453
Bst6I CTCTTC 2 cut(s) 35, 56
BstACI GRCGYC 1 cut(s) 138
BstAPI GCANNNNNTGC 1 cut(s) 486
BstC8I GCNNGC 2 cut(s) 444, 487
BstDEI CTNAG 5 cut(s) 7, 55, 80, 305, 507
BstEII GGTNACC 1 cut(s) 364
BstF5I GGATG 2 cut(s) 110, 384
BstKTI GATC 3 cut(s) 200, 234, 268
BstMAI GTCTC 1 cut(s) 78
BstMBI GATC 3 cut(s) 197, 231, 265
BstMWI GCNNNNNNNGC 1 cut(s) 486
BstPI GGTNACC 1 cut(s) 364
BstSFI CTRYAG 1 cut(s) 280
BstX2I RGATCY 2 cut(s) 197, 231
BstYI RGATCY 2 cut(s) 197, 231
BsuRI GGCC 2 cut(s) 5, 165
BtsCI GGATG 2 cut(s) 110, 384
Cac8I GCNNGC 2 cut(s) 444, 487
Csp6I GTAC 2 cut(s) 160, 277
CviAII CATG 2 cut(s) 143, 249
CviQI GTAC 2 cut(s) 160, 277
DdeI CTNAG 5 cut(s) 7, 55, 80, 305, 507
DpnI GATC 3 cut(s) 199, 233, 267
DpnII GATC 3 cut(s) 197, 231, 265
Eam1104I CTCTTC 2 cut(s) 35, 56
EarI CTCTTC 2 cut(s) 35, 56
Eco130I CCWWGG 1 cut(s) 170
Eco24I GRGCYC 1 cut(s) 427
Eco31I GGTCTC 1 cut(s) 78
Eco91I GGTNACC 1 cut(s) 364
EcoO65I GGTNACC 1 cut(s) 364
EcoT14I CCWWGG 1 cut(s) 170
EcoT22I ATGCAT 1 cut(s) 384
EcoT38I GRGCYC 1 cut(s) 427
ErhI CCWWGG 1 cut(s) 170
FaeI CATG 2 cut(s) 146, 252
FaiI YATR 6 cut(s) 144, 250, 255, 384, 386, 472
FatI CATG 2 cut(s) 142, 248
FauNDI CATATG 1 cut(s) 384
FbaI TGATCA 1 cut(s) 265
FokI GGATG 2 cut(s) 97, 391
FriOI GRGCYC 1 cut(s) 427
FspBI CTAG 1 cut(s) 501
HaeIII GGCC 2 cut(s) 5, 165
Hin1I GRCGYC 1 cut(s) 138
Hin1II CATG 2 cut(s) 146, 252
HinfI GANTC 3 cut(s) 337, 401, 509
HphI GGTGA 1 cut(s) 7
Hpy166II GTNNAC 2 cut(s) 259, 277
Hpy188I TCNGA 6 cut(s) 58, 83, 214, 325, 400, 433
Hpy188III TCNNGA 2 cut(s) 229, 239
Hpy8I GTNNAC 2 cut(s) 259, 277
Hpy99I CGWCG 1 cut(s) 218
HpyAV CCTTC 2 cut(s) 44, 235
HpyCH4III ACNGT 3 cut(s) 107, 370, 453
HpyCH4IV ACGT 3 cut(s) 138, 192, 417
HpyCH4V TGCA 1 cut(s) 382
HpyF10VI GCNNNNNNNGC 1 cut(s) 486
HpyF3I CTNAG 5 cut(s) 7, 55, 80, 305, 507
HpySE526I ACGT 3 cut(s) 138, 192, 417
Hsp92I GRCGYC 1 cut(s) 138
Hsp92II CATG 2 cut(s) 146, 252
Ksp22I TGATCA 1 cut(s) 265
Kzo9I GATC 3 cut(s) 197, 231, 265
LmnI GCTCC 2 cut(s) 126, 497
LpnPI CCDG 2 cut(s) 456, 480
LweI GCATC 1 cut(s) 369
MaeI CTAG 1 cut(s) 501
MaeII ACGT 3 cut(s) 138, 192, 417
MaeIII GTNAC 4 cut(s) 13, 180, 364, 370
MalI GATC 3 cut(s) 199, 233, 267
MboI GATC 3 cut(s) 197, 231, 265
MboII GAAGA 2 cut(s) 22, 43
MflI RGATCY 2 cut(s) 197, 231
MhlI GDGCHC 1 cut(s) 427
MluCI AATT 2 cut(s) 65, 437
MlyI GAGTC 1 cut(s) 518
MmeI TCCRAC 1 cut(s) 237
Mph1103I ATGCAT 1 cut(s) 384
MwoI GCNNNNNNNGC 1 cut(s) 486
NdeI CATATG 1 cut(s) 384
NdeII GATC 3 cut(s) 197, 231, 265
NlaIII CATG 2 cut(s) 146, 252
NlaIV GGNNCC 1 cut(s) 223
NmeAIII GCCGAG 1 cut(s) 515
NmuCI GTSAC 2 cut(s) 13, 370
NsiI ATGCAT 1 cut(s) 384
PfeI GAWTC 2 cut(s) 337, 401
PleI GAGTC 1 cut(s) 517
PpsI GAGTC 1 cut(s) 517
PspEI GGTNACC 1 cut(s) 364
PspN4I GGNNCC 1 cut(s) 223
PsuI RGATCY 2 cut(s) 197, 231
RsaI GTAC 2 cut(s) 161, 278
RsaNI GTAC 2 cut(s) 160, 277
Sau3AI GATC 3 cut(s) 197, 231, 265
SchI GAGTC 1 cut(s) 518
SduI GDGCHC 1 cut(s) 427
SfaNI GCATC 1 cut(s) 369
SfcI CTRYAG 1 cut(s) 280
Sse9I AATT 2 cut(s) 65, 437
SspMI CTAG 1 cut(s) 501
StyI CCWWGG 1 cut(s) 170
TaaI ACNGT 3 cut(s) 107, 370, 453
TaiI ACGT 3 cut(s) 141, 195, 420
TaqI TCGA 3 cut(s) 228, 240, 456
TasI AATT 2 cut(s) 65, 437
TatI WGTACW 1 cut(s) 276
TfiI GAWTC 2 cut(s) 337, 401
TseFI GTSAC 2 cut(s) 13, 370
Tsp45I GTSAC 2 cut(s) 13, 370
XspI CTAG 1 cut(s) 501
ZraI GACGTC 1 cut(s) 139
Zsp2I ATGCAT 1 cut(s) 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.