RchiOBHm_Chr5g0082211

Protein of unknown function, DUF538

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0002071
Physical Location & Seq
Forward (+)
88163888 .. 88165647
1760 bp
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UTR
Exon/CDS
Intron
PRQ35643

Sequence Viewer

Length: 249 bp
ATGACCTCCTCCCCAAGTACGGCCTCCCAAGGGTTGGTGTACTACAACAAGAACATCAAAGGGAAGCTGAGTTTCGGCTCTGTTTCCGATGTGTCGGGGATTCAAGCCAAGAAGCTATTTATTTGGGTTTCCGTGACGGGGATGCATATGGAACAAGGGTCTGATTTAGTTGAGTTTTACGTTGGGGCTCTGTCCGAGAAATTGCCTGCTAAACAGTTCGAGGACATTCCTGTATGTAAGAGCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF538

Protein Analysis

82

Amino Acids

8.91

Weight (kDa)

7.84

Isoelectric Point (pI)

45.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF538 PF04398 9 - 74 3.8e-16 Protein of unknown function, DUF538
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 34
AfaI GTAC 2 cut(s) 19, 41
AfiI CCNNNNNNNGG 4 cut(s) 19, 30, 34, 138
AgsI TTSAA 1 cut(s) 104
AluBI AGCT 2 cut(s) 67, 115
AluI AGCT 2 cut(s) 67, 115
AoxI GGCC 1 cut(s) 21
BanII GRGCYC 1 cut(s) 190
BceAI ACGGC 1 cut(s) 36
BmsI GCATC 1 cut(s) 132
BsaJI CCNNGG 1 cut(s) 28
Bsc4I CCNNNNNNNGG 4 cut(s) 19, 30, 34, 138
BseDI CCNNGG 1 cut(s) 28
BseGI GGATG 1 cut(s) 147
BseLI CCNNNNNNNGG 4 cut(s) 19, 30, 34, 138
BseMII CTCAG 1 cut(s) 59
BshFI GGCC 1 cut(s) 23
BslI CCNNNNNNNGG 4 cut(s) 19, 30, 34, 138
BsnI GGCC 1 cut(s) 23
Bsp1286I GDGCHC 1 cut(s) 190
BspANI GGCC 1 cut(s) 23
BspCNI CTCAG 1 cut(s) 60
BssECI CCNNGG 1 cut(s) 28
BssT1I CCWWGG 1 cut(s) 28
Bst4CI ACNGT 1 cut(s) 216
BstC8I GCNNGC 1 cut(s) 207
BstDEI CTNAG 1 cut(s) 68
BstF5I GGATG 1 cut(s) 147
BsuRI GGCC 1 cut(s) 23
BtsCI GGATG 1 cut(s) 147
Cac8I GCNNGC 1 cut(s) 207
Csp6I GTAC 2 cut(s) 18, 40
CviJI RGCY 6 cut(s) 23, 67, 78, 107, 115, 188
CviKI_1 RGCY 6 cut(s) 23, 67, 78, 107, 115, 188
CviQI GTAC 2 cut(s) 18, 40
DdeI CTNAG 1 cut(s) 68
Eco130I CCWWGG 1 cut(s) 28
Eco24I GRGCYC 1 cut(s) 190
EcoT14I CCWWGG 1 cut(s) 28
EcoT22I ATGCAT 1 cut(s) 147
EcoT38I GRGCYC 1 cut(s) 190
ErhI CCWWGG 1 cut(s) 28
FaiI YATR 3 cut(s) 147, 149, 235
FauNDI CATATG 1 cut(s) 147
FokI GGATG 1 cut(s) 154
FriOI GRGCYC 1 cut(s) 190
HaeIII GGCC 1 cut(s) 23
HinfI GANTC 1 cut(s) 100
Hpy166II GTNNAC 1 cut(s) 40
Hpy188I TCNGA 3 cut(s) 88, 163, 196
Hpy8I GTNNAC 1 cut(s) 40
HpyCH4III ACNGT 1 cut(s) 216
HpyCH4IV ACGT 1 cut(s) 180
HpyCH4V TGCA 1 cut(s) 145
HpyF3I CTNAG 1 cut(s) 68
HpySE526I ACGT 1 cut(s) 180
LpnPI CCDG 2 cut(s) 219, 243
LweI GCATC 1 cut(s) 132
MaeII ACGT 1 cut(s) 180
MaeIII GTNAC 1 cut(s) 133
MhlI GDGCHC 1 cut(s) 190
MluCI AATT 2 cut(s) 200, 244
MnlI CCTC 4 cut(s) 16, 19, 34, 214
Mph1103I ATGCAT 1 cut(s) 147
MseI TTAA 1 cut(s) 247
NdeI CATATG 1 cut(s) 147
NmuCI GTSAC 1 cut(s) 133
NsiI ATGCAT 1 cut(s) 147
PfeI GAWTC 1 cut(s) 100
PflMI CCANNNNNTGG 1 cut(s) 34
RsaI GTAC 2 cut(s) 19, 41
RsaNI GTAC 2 cut(s) 18, 40
SaqAI TTAA 1 cut(s) 247
SduI GDGCHC 1 cut(s) 190
SetI ASST 4 cut(s) 8, 69, 117, 183
SfaNI GCATC 1 cut(s) 132
Sse9I AATT 2 cut(s) 200, 244
StyI CCWWGG 1 cut(s) 28
TaaI ACNGT 1 cut(s) 216
TaiI ACGT 1 cut(s) 183
TaqI TCGA 1 cut(s) 219
TasI AATT 2 cut(s) 200, 244
TatI WGTACW 1 cut(s) 39
TfiI GAWTC 1 cut(s) 100
Tru1I TTAA 1 cut(s) 247
Tru9I TTAA 1 cut(s) 247
TseFI GTSAC 1 cut(s) 133
Tsp45I GTSAC 1 cut(s) 133
TspGWI ACGGA 1 cut(s) 121
Van91I CCANNNNNTGG 1 cut(s) 34
Zsp2I ATGCAT 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.