FvH4_4g23690

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0006404
Physical Location & Seq
Reverse (-)
26099818 .. 26101415
1598 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g23690.t1

Sequence Viewer

Length: 813 bp
ATGGGAAAAGTGTCTCAAGGCAATGAGGAAACCGGCAACGGCTGCCGTGCTGTTGGGTTTCTTAGTCATGTGACTCATGTACAACCCCAAACTCACCAGCCCTGGCTGCTCCGGTTGGTCGGGTTGGGGCAAGGTGGACATCCAACACCTCGTACAACAAATCTGAAAATTCTAAAACCTACGACGTATTCTATGAACCATTCTGGGACTGCTAACCTCTTTCGGTGTCAAACAAGTGTTGTCAAGCTCCAGCTTCAGGTTAAATTGTCGAACACTGCCGAAACAGTGCAAACGGATCTTAACCGGATCGCTGAAACTGCAGAACCAAAATCGCTTGAGGGTTTGAGATATCTTTTGAGAGATACAGCAATAGCTCTACTTCGGCAACCTGATTATTGCATTTCCGGTTACACATCTGTGGTTACAAACTTTGATAGAGCGGCTGCGCAAGAATTATATCATAAACTTGTTGTAAGAGAGAGGGTAAGATATGACGAAGAGACCATTCTCAATGTGGACAATACAAAAGCTCAAAGCACAGCAAGCCATGCCAGAGATCGATATCGCACAATGACAATATTACGATGTCGACTGAATATCATAGTAAAAAAAGTTACAGTATTACTTGTTGCTGAAGGGAACTACTCCAAGTCGCTCACTGTCACTGACAGCAGTGAGGTGAAAAGAATGTTGCAAGAGCTTTTATCCATTGATCCAAGGAAACGAGTATTAGGAGTAGAGGTACTGTGGAGTACTCCTCAGCTATCTTCAAATGCAGCAAGCGGATGTATTAATAGACAATCACCTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

271

Amino Acids

30.12

Weight (kDa)

9.51

Isoelectric Point (pI)

29.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1517 PF07466 83 - 254 2.2e-31 Protein of unknown function (DUF1517)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 447
AccBSI CCGCTC 1 cut(s) 440
AccI GTMKAC 1 cut(s) 589
AciI CCGC 2 cut(s) 440, 783
AclWI GGATC 3 cut(s) 303, 314, 707
AcsI RAATTY 1 cut(s) 168
AcuI CTGAAG 2 cut(s) 239, 654
AfaI GTAC 4 cut(s) 81, 154, 744, 754
AfiI CCNNNNNNNGG 1 cut(s) 256
AgsI TTSAA 1 cut(s) 771
AjnI CCWGG 1 cut(s) 101
AleI CACNNNNGTG 1 cut(s) 416
AluBI AGCT 6 cut(s) 247, 253, 374, 530, 700, 763
AluI AGCT 6 cut(s) 247, 253, 374, 530, 700, 763
Alw26I GTCTC 2 cut(s) 18, 494
AlwI GGATC 3 cut(s) 303, 314, 707
ApeKI GCWGC 4 cut(s) 42, 106, 443, 776
ApoI RAATTY 1 cut(s) 168
AseI ATTAAT 1 cut(s) 792
AspLEI GCGC 1 cut(s) 448
AsuHPI GGTGA 3 cut(s) 86, 691, 795
BbvCI CCTCAGC 1 cut(s) 759
BbvI GCAGC 4 cut(s) 29, 93, 430, 788
BceAI ACGGC 2 cut(s) 30, 55
BciT130I CCWGG 1 cut(s) 103
BcoDI GTCTC 2 cut(s) 18, 494
BfmI CTRYAG 1 cut(s) 318
BisI GCNGC 5 cut(s) 43, 107, 441, 444, 777
BlsI GCNGC 5 cut(s) 44, 108, 442, 445, 778
BmcAI AGTACT 1 cut(s) 754
Bme1390I CCNGG 1 cut(s) 103
BmrFI CCNGG 1 cut(s) 103
BplI GAGNNNNNCTC 2 cut(s) 742, 774
BpmI CTGGAG 1 cut(s) 233
Bpu10I CCTNAGC 1 cut(s) 759
BpuEI CTTGAG 1 cut(s) 356
Bsa29I ATCGAT 1 cut(s) 559
BsaBI GATNNNNATC 1 cut(s) 561
BsaI GGTCTC 1 cut(s) 494
BsaJI CCNNGG 2 cut(s) 101, 716
BsaWI WCCGGW 3 cut(s) 111, 303, 404
BsaXI ACNNNNNCTCC 2 cut(s) 726, 756
Bsc4I CCNNNNNNNGG 1 cut(s) 256
Bse118I RCCGGY 1 cut(s) 32
Bse3DI GCAATG 1 cut(s) 28
Bse8I GATNNNNATC 1 cut(s) 561
BseBI CCWGG 1 cut(s) 103
BseCI ATCGAT 1 cut(s) 559
BseDI CCNNGG 2 cut(s) 101, 716
BseGI GGATG 2 cut(s) 139, 791
BseJI GATNNNNATC 1 cut(s) 561
BseLI CCNNNNNNNGG 1 cut(s) 256
BseMI GCAATG 1 cut(s) 28
BseMII CTCAG 1 cut(s) 773
BseRI GAGGAG 1 cut(s) 747
BseXI GCAGC 4 cut(s) 29, 93, 430, 788
BshVI ATCGAT 1 cut(s) 559
BsiSI CCGG 4 cut(s) 33, 112, 304, 405
BslFI GGGAC 1 cut(s) 220
BslI CCNNNNNNNGG 1 cut(s) 256
BsmAI GTCTC 2 cut(s) 18, 494
BsmFI GGGAC 1 cut(s) 220
Bso31I GGTCTC 1 cut(s) 494
Bsp1407I TGTACA 1 cut(s) 79
Bsp143I GATC 4 cut(s) 295, 306, 556, 712
BspACI CCGC 2 cut(s) 440, 783
BspCNI CTCAG 1 cut(s) 772
BspDI ATCGAT 1 cut(s) 559
BspMAI CTGCAG 1 cut(s) 322
BspPI GGATC 3 cut(s) 303, 314, 707
BspTNI GGTCTC 1 cut(s) 494
BsrBI CCGCTC 1 cut(s) 440
BsrDI GCAATG 1 cut(s) 28
BsrFI RCCGGY 1 cut(s) 32
BsrGI TGTACA 1 cut(s) 79
BssAI RCCGGY 1 cut(s) 32
BssECI CCNNGG 2 cut(s) 101, 716
BssMI GATC 4 cut(s) 295, 306, 556, 712
BssT1I CCWWGG 1 cut(s) 716
Bst2UI CCWGG 1 cut(s) 103
Bst4CI ACNGT 4 cut(s) 286, 619, 661, 747
Bst6I CTCTTC 1 cut(s) 492
BstAPI GCANNNNNTGC 2 cut(s) 42, 548
BstAUI TGTACA 1 cut(s) 79
BstC8I GCNNGC 2 cut(s) 544, 781
BstDEI CTNAG 2 cut(s) 62, 759
BstF5I GGATG 2 cut(s) 139, 791
BstHHI GCGC 1 cut(s) 448
BstKTI GATC 4 cut(s) 298, 309, 559, 715
BstMAI GTCTC 2 cut(s) 18, 494
BstMBI GATC 4 cut(s) 295, 306, 556, 712
BstMWI GCNNNNNNNGC 5 cut(s) 42, 106, 317, 543, 548
BstNI CCWGG 1 cut(s) 103
BstSCI CCNGG 1 cut(s) 101
BstSFI CTRYAG 1 cut(s) 318
BstV1I GCAGC 4 cut(s) 29, 93, 430, 788
BstX2I RGATCY 1 cut(s) 295
BstYI RGATCY 1 cut(s) 295
Bsu15I ATCGAT 1 cut(s) 559
BsuTUI ATCGAT 1 cut(s) 559
BtsCI GGATG 2 cut(s) 139, 791
BtsI GCAGTG 2 cut(s) 273, 679
BtsIMutI CAGTG 5 cut(s) 273, 291, 657, 663, 679
Cac8I GCNNGC 2 cut(s) 544, 781
CfoI GCGC 1 cut(s) 448
Cfr10I RCCGGY 1 cut(s) 32
ClaI ATCGAT 1 cut(s) 559
Csp6I GTAC 4 cut(s) 80, 153, 743, 753
CviAII CATG 3 cut(s) 68, 77, 548
CviQI GTAC 4 cut(s) 80, 153, 743, 753
DdeI CTNAG 2 cut(s) 62, 759
DpnI GATC 4 cut(s) 297, 308, 558, 714
DpnII GATC 4 cut(s) 295, 306, 556, 712
Eam1104I CTCTTC 1 cut(s) 492
EarI CTCTTC 1 cut(s) 492
Eco130I CCWWGG 1 cut(s) 716
Eco31I GGTCTC 1 cut(s) 494
Eco32I GATATC 2 cut(s) 350, 563
Eco57I CTGAAG 2 cut(s) 239, 654
EcoRII CCWGG 1 cut(s) 101
EcoRV GATATC 2 cut(s) 350, 563
EcoT14I CCWWGG 1 cut(s) 716
ErhI CCWWGG 1 cut(s) 716
FaeI CATG 3 cut(s) 71, 80, 551
FaiI YATR 8 cut(s) 69, 78, 194, 457, 462, 492, 549, 602
FaqI GGGAC 1 cut(s) 220
FatI CATG 3 cut(s) 67, 76, 547
FblI GTMKAC 1 cut(s) 589
Fnu4HI GCNGC 5 cut(s) 43, 107, 441, 444, 777
FokI GGATG 2 cut(s) 126, 798
Fsp4HI GCNGC 5 cut(s) 43, 107, 441, 444, 777
FspI TGCGCA 1 cut(s) 447
GlaI GCGC 1 cut(s) 447
GluI GCNGC 5 cut(s) 43, 107, 441, 444, 777
GsuI CTGGAG 1 cut(s) 233
HapII CCGG 4 cut(s) 33, 112, 304, 405
HhaI GCGC 1 cut(s) 448
Hin1II CATG 3 cut(s) 71, 80, 551
Hin6I GCGC 1 cut(s) 446
HinP1I GCGC 1 cut(s) 446
HincII GTYRAC 1 cut(s) 590
HindII GTYRAC 1 cut(s) 590
HinfI GANTC 1 cut(s) 73
HpaII CCGG 4 cut(s) 33, 112, 304, 405
HphI GGTGA 3 cut(s) 86, 691, 795
Hpy166II GTNNAC 3 cut(s) 137, 517, 590
Hpy188I TCNGA 1 cut(s) 165
Hpy8I GTNNAC 3 cut(s) 137, 517, 590
Hpy99I CGWCG 1 cut(s) 187
HpyAV CCTTC 1 cut(s) 629
HpyCH4III ACNGT 4 cut(s) 286, 619, 661, 747
HpyCH4IV ACGT 1 cut(s) 185
HpyCH4V TGCA 5 cut(s) 289, 320, 399, 694, 776
HpyF10VI GCNNNNNNNGC 5 cut(s) 42, 106, 317, 543, 548
HpyF3I CTNAG 2 cut(s) 62, 759
HpySE526I ACGT 1 cut(s) 185
Hsp92II CATG 3 cut(s) 71, 80, 551
HspAI GCGC 1 cut(s) 446
Kzo9I GATC 4 cut(s) 295, 306, 556, 712
LmnI GCTCC 2 cut(s) 114, 252
Lsp1109I GCAGC 4 cut(s) 29, 93, 430, 788
MaeII ACGT 1 cut(s) 185
MaeIII GTNAC 5 cut(s) 70, 407, 421, 613, 661
MalI GATC 4 cut(s) 297, 308, 558, 714
MbiI CCGCTC 1 cut(s) 440
MboI GATC 4 cut(s) 295, 306, 556, 712
MboII GAAGA 2 cut(s) 509, 759
MflI RGATCY 1 cut(s) 295
MluCI AATT 3 cut(s) 168, 263, 452
MlyI GAGTC 1 cut(s) 67
MmeI TCCRAC 1 cut(s) 167
MnlI CCTC 8 cut(s) 19, 159, 227, 331, 474, 670, 733, 768
MseI TTAA 4 cut(s) 261, 300, 792, 811
MslI CAYNNNNRTG 1 cut(s) 416
MspI CCGG 4 cut(s) 33, 112, 304, 405
MspR9I CCNGG 1 cut(s) 103
MvaI CCWGG 1 cut(s) 103
MwoI GCNNNNNNNGC 5 cut(s) 42, 106, 317, 543, 548
NdeII GATC 4 cut(s) 295, 306, 556, 712
NlaIII CATG 3 cut(s) 71, 80, 551
NmuCI GTSAC 2 cut(s) 70, 661
NsbI TGCGCA 1 cut(s) 447
OliI CACNNNNGTG 1 cut(s) 416
PkrI GCNGC 5 cut(s) 44, 108, 442, 445, 778
PleI GAGTC 1 cut(s) 67
PpsI GAGTC 1 cut(s) 67
PshBI ATTAAT 1 cut(s) 792
Psp6I CCWGG 1 cut(s) 101
PspGI CCWGG 1 cut(s) 101
PstI CTGCAG 1 cut(s) 322
PsuI RGATCY 1 cut(s) 295
RsaI GTAC 4 cut(s) 81, 154, 744, 754
RsaNI GTAC 4 cut(s) 80, 153, 743, 753
RseI CAYNNNNRTG 1 cut(s) 416
SalI GTCGAC 1 cut(s) 588
SaqAI TTAA 4 cut(s) 261, 300, 792, 811
SatI GCNGC 5 cut(s) 43, 107, 441, 444, 777
Sau3AI GATC 4 cut(s) 295, 306, 556, 712
ScaI AGTACT 1 cut(s) 754
SchI GAGTC 1 cut(s) 67
ScrFI CCNGG 1 cut(s) 103
SfcI CTRYAG 1 cut(s) 318
SmiMI CAYNNNNRTG 1 cut(s) 416
SmlI CTYRAG 2 cut(s) 15, 335
SmoI CTYRAG 2 cut(s) 15, 335
Sse9I AATT 3 cut(s) 168, 263, 452
SsiI CCGC 2 cut(s) 440, 783
SspI AATATT 1 cut(s) 579
StyD4I CCNGG 1 cut(s) 101
StyI CCWWGG 1 cut(s) 716
TaaI ACNGT 4 cut(s) 286, 619, 661, 747
TaiI ACGT 1 cut(s) 188
TaqI TCGA 3 cut(s) 269, 559, 589
TasI AATT 3 cut(s) 168, 263, 452
TatI WGTACW 2 cut(s) 79, 752
TauI GCSGC 1 cut(s) 443
Tru1I TTAA 4 cut(s) 261, 300, 792, 811
Tru9I TTAA 4 cut(s) 261, 300, 792, 811
TscAI CASTG 5 cut(s) 280, 291, 664, 670, 679
TseFI GTSAC 2 cut(s) 70, 661
TseI GCWGC 4 cut(s) 42, 106, 443, 776
Tsp45I GTSAC 2 cut(s) 70, 661
TspDTI ATGAA 1 cut(s) 209
TspGWI ACGGA 1 cut(s) 308
TspRI CASTG 5 cut(s) 280, 291, 664, 670, 679
VspI ATTAAT 1 cut(s) 792
XapI RAATTY 1 cut(s) 168
XcmI CCANNNNNNNNNTGG 1 cut(s) 511
XmiI GTMKAC 1 cut(s) 589
ZrmI AGTACT 1 cut(s) 754
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.