Rh2DG678100

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0006404
Physical Location & Seq
Reverse (-)
89849654 .. 89865877
16224 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG678100.1

Sequence Viewer

Length: 849 bp
ATGGCTGCCTTGCTGTTGGGTTTGTTAGTCATGTACAACCCCAACTCATCCGCGTTGGCTGCTCCGGTGGGTCGGGTCGGTGGAAGTTTGACACCCACGTGCACGACGTCGCACCATCCATCTAAATATTCTTCGACCACAATGAAAACGTCCGACCACTACGATGATCCGATCTGGGAGTTTGCAGTCTCATGGTTCACTCTTTTCTGCTGTTACGCGGGATTTTTTGCGTGGGTTTTGCCTATCTCTAAGTTTTGCAAGGCTGCCTTGTTTATTTTCGGGACAGTTTTATTCGCTATTTGGGTTCACTTTCTAGGTCAAACAAGTGTTGTCAAGCTCCAGCTTCAGGTTACTTCATCGAACACGGGACGAGCAGTGCAAACGGATCTTAATCGGATCGCTGAAACTGCAGATACATCTACACTTACGGGTTTGAGATATGTTTTGAGAGATACAGTAGTAGCTCTATTTCGGCAACCTGATTATTGCATTTCCGGTTACTCATGTGTGGTTATACCAAAGTTCTCTAGAGCAGCGGCTCAGCAATGCTTTGATCAACTTGTGTTCAGAGAGAGGGTTAGATATGATGAAGAGACCATTGTCAATGTGGACAATATAAAAACTCAAAGCACACCAAGTCAGAGATCGACTAATGAATCTCACAATGACAATGTGGAGGTTACAATTTTACTTGCTGTTGAAGGAAAGTCTAAGTTGCCCACTATCATTGACAGCAGTGACTTGAAGAAAGTGATGGAAGAGCTTGCATCCATTGATCCCAGCAGACTAATATTTGGATTAGAGGTACGGTGGACTCCTCAGTTCTCTTCAAATGCGGCAAGCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

282

Amino Acids

31.28

Weight (kDa)

6.94

Isoelectric Point (pI)

35.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1517 PF07466 108 - 277 1.4e-40 Protein of unknown function (DUF1517)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 110
AccII CGCG 2 cut(s) 53, 218
AciI CCGC 4 cut(s) 51, 218, 536, 836
AclWI GGATC 4 cut(s) 161, 393, 404, 770
AcuI CTGAAG 1 cut(s) 329
AcvI CACGTG 1 cut(s) 99
AcyI GRCGYC 1 cut(s) 107
AfaI GTAC 2 cut(s) 35, 807
AfiI CCNNNNNNNGG 1 cut(s) 346
AgsI TTSAA 3 cut(s) 701, 745, 831
AleI CACNNNNGTG 1 cut(s) 97
AluBI AGCT 4 cut(s) 337, 343, 464, 763
AluI AGCT 4 cut(s) 337, 343, 464, 763
Alw21I GWGCWC 1 cut(s) 104
Alw26I GTCTC 2 cut(s) 193, 587
Alw44I GTGCAC 1 cut(s) 100
AlwI GGATC 4 cut(s) 161, 393, 404, 770
ApaLI GTGCAC 1 cut(s) 100
ApeKI GCWGC 4 cut(s) 5, 59, 263, 533
BaeGI GKGCMC 1 cut(s) 104
BaeI ACNNNNGTAYC 2 cut(s) 444, 477
BbrPI CACGTG 1 cut(s) 99
Bbv12I GWGCWC 1 cut(s) 104
BbvI GCAGC 3 cut(s) 46, 250, 545
BccI CCATC 3 cut(s) 123, 127, 748
BclI TGATCA 1 cut(s) 553
BcoDI GTCTC 2 cut(s) 193, 587
BfaI CTAG 2 cut(s) 314, 528
BfmI CTRYAG 1 cut(s) 408
BisI GCNGC 6 cut(s) 6, 60, 264, 534, 537, 837
BlpI GCTNAGC 1 cut(s) 540
BlsI GCNGC 6 cut(s) 7, 61, 265, 535, 538, 838
BmsI GCATC 1 cut(s) 776
BoxI GACNNNNGTC 1 cut(s) 599
BpmI CTGGAG 1 cut(s) 323
Bpu1102I GCTNAGC 1 cut(s) 540
BsaAI YACGTR 1 cut(s) 99
BsaBI GATNNNNATC 1 cut(s) 390
BsaHI GRCGYC 1 cut(s) 107
BsaI GGTCTC 1 cut(s) 587
BsaWI WCCGGW 2 cut(s) 64, 494
Bsc4I CCNNNNNNNGG 1 cut(s) 346
Bse3DI GCAATG 1 cut(s) 551
Bse8I GATNNNNATC 1 cut(s) 390
BseGI GGATG 3 cut(s) 47, 115, 767
BseJI GATNNNNATC 1 cut(s) 390
BseLI CCNNNNNNNGG 1 cut(s) 346
BseMI GCAATG 1 cut(s) 551
BseMII CTCAG 2 cut(s) 554, 833
BseRI GAGGAG 1 cut(s) 807
BseSI GKGCMC 1 cut(s) 104
BseXI GCAGC 3 cut(s) 46, 250, 545
BseYI CCCAGC 1 cut(s) 779
Bsh1236I CGCG 2 cut(s) 53, 218
BsiHKAI GWGCWC 1 cut(s) 104
BsiSI CCGG 2 cut(s) 65, 495
BslFI GGGAC 2 cut(s) 295, 381
BslI CCNNNNNNNGG 1 cut(s) 346
BsmAI GTCTC 2 cut(s) 193, 587
BsmFI GGGAC 2 cut(s) 295, 381
Bso31I GGTCTC 1 cut(s) 587
Bsp1286I GDGCHC 1 cut(s) 104
Bsp1407I TGTACA 1 cut(s) 33
Bsp143I GATC 7 cut(s) 166, 171, 385, 396, 553, 644, 775
Bsp1720I GCTNAGC 1 cut(s) 540
BspACI CCGC 4 cut(s) 51, 218, 536, 836
BspCNI CTCAG 2 cut(s) 553, 832
BspFNI CGCG 2 cut(s) 53, 218
BspMAI CTGCAG 1 cut(s) 412
BspPI GGATC 4 cut(s) 161, 393, 404, 770
BspQI GCTCTTC 1 cut(s) 753
BspTNI GGTCTC 1 cut(s) 587
BsrDI GCAATG 1 cut(s) 551
BsrGI TGTACA 1 cut(s) 33
BssMI GATC 7 cut(s) 166, 171, 385, 396, 553, 644, 775
BssNI GRCGYC 1 cut(s) 107
Bst4CI ACNGT 3 cut(s) 286, 457, 810
Bst6I CTCTTC 3 cut(s) 585, 753, 832
BstACI GRCGYC 1 cut(s) 107
BstAUI TGTACA 1 cut(s) 33
BstBAI YACGTR 1 cut(s) 99
BstC8I GCNNGC 2 cut(s) 765, 841
BstDEI CTNAG 4 cut(s) 249, 540, 711, 819
BstF5I GGATG 3 cut(s) 47, 115, 767
BstFNI CGCG 2 cut(s) 53, 218
BstKTI GATC 7 cut(s) 169, 174, 388, 399, 556, 647, 778
BstMAI GTCTC 2 cut(s) 193, 587
BstMBI GATC 7 cut(s) 166, 171, 385, 396, 553, 644, 775
BstMWI GCNNNNNNNGC 2 cut(s) 59, 407
BstPAI GACNNNNGTC 1 cut(s) 599
BstSFI CTRYAG 1 cut(s) 408
BstSLI GKGCMC 1 cut(s) 104
BstUI CGCG 2 cut(s) 53, 218
BstV1I GCAGC 3 cut(s) 46, 250, 545
BstX2I RGATCY 1 cut(s) 385
BstYI RGATCY 1 cut(s) 385
BtsCI GGATG 3 cut(s) 47, 115, 767
BtsI GCAGTG 2 cut(s) 381, 742
BtsIMutI CAGTG 2 cut(s) 381, 742
Cac8I GCNNGC 2 cut(s) 765, 841
Csp6I GTAC 2 cut(s) 34, 806
CspCI CAANNNNNGTGG 2 cut(s) 709, 744
CviAII CATG 3 cut(s) 31, 192, 504
CviJI RGCY 8 cut(s) 5, 59, 263, 337, 343, 464, 539, 763
CviKI_1 RGCY 8 cut(s) 5, 59, 263, 337, 343, 464, 539, 763
CviQI GTAC 2 cut(s) 34, 806
DdeI CTNAG 4 cut(s) 249, 540, 711, 819
DpnI GATC 7 cut(s) 168, 173, 387, 398, 555, 646, 777
DpnII GATC 7 cut(s) 166, 171, 385, 396, 553, 644, 775
Eam1104I CTCTTC 3 cut(s) 585, 753, 832
EarI CTCTTC 3 cut(s) 585, 753, 832
Eco31I GGTCTC 1 cut(s) 587
Eco57I CTGAAG 1 cut(s) 329
Eco72I CACGTG 1 cut(s) 99
FaeI CATG 3 cut(s) 34, 195, 507
FaiI YATR 7 cut(s) 32, 193, 441, 505, 515, 585, 617
FalI AAGNNNNNCTT 2 cut(s) 251, 283
FaqI GGGAC 2 cut(s) 295, 381
FatI CATG 3 cut(s) 30, 191, 503
FauI CCCGC 1 cut(s) 211
FbaI TGATCA 1 cut(s) 553
Fnu4HI GCNGC 6 cut(s) 6, 60, 264, 534, 537, 837
FokI GGATG 3 cut(s) 34, 102, 754
Fsp4HI GCNGC 6 cut(s) 6, 60, 264, 534, 537, 837
FspBI CTAG 2 cut(s) 314, 528
GluI GCNGC 6 cut(s) 6, 60, 264, 534, 537, 837
GsaI CCCAGC 1 cut(s) 783
GsuI CTGGAG 1 cut(s) 323
HapII CCGG 2 cut(s) 65, 495
Hin1I GRCGYC 1 cut(s) 107
Hin1II CATG 3 cut(s) 34, 195, 507
HinfI GANTC 2 cut(s) 656, 814
HpaII CCGG 2 cut(s) 65, 495
Hpy166II GTNNAC 5 cut(s) 102, 198, 307, 610, 813
Hpy188I TCNGA 5 cut(s) 154, 171, 396, 569, 642
Hpy188III TCNNGA 2 cut(s) 280, 528
Hpy8I GTNNAC 5 cut(s) 102, 198, 307, 610, 813
Hpy99I CGWCG 2 cut(s) 109, 112
HpyAV CCTTC 1 cut(s) 695
HpyCH4III ACNGT 3 cut(s) 286, 457, 810
HpyCH4IV ACGT 3 cut(s) 98, 107, 149
HpyCH4V TGCA 7 cut(s) 102, 185, 258, 379, 410, 489, 767
HpyF10VI GCNNNNNNNGC 2 cut(s) 59, 407
HpyF3I CTNAG 4 cut(s) 249, 540, 711, 819
HpySE526I ACGT 3 cut(s) 98, 107, 149
Hsp92I GRCGYC 1 cut(s) 107
Hsp92II CATG 3 cut(s) 34, 195, 507
Ksp22I TGATCA 1 cut(s) 553
Kzo9I GATC 7 cut(s) 166, 171, 385, 396, 553, 644, 775
LguI GCTCTTC 1 cut(s) 753
LmnI GCTCC 2 cut(s) 67, 342
LpnPI CCDG 7 cut(s) 78, 160, 332, 353, 492, 508, 793
Lsp1109I GCAGC 3 cut(s) 46, 250, 545
LweI GCATC 1 cut(s) 776
MaeI CTAG 2 cut(s) 314, 528
MaeII ACGT 3 cut(s) 98, 107, 149
MaeIII GTNAC 5 cut(s) 212, 349, 497, 679, 737
MalI GATC 7 cut(s) 168, 173, 387, 398, 555, 646, 777
MboI GATC 7 cut(s) 166, 171, 385, 396, 553, 644, 775
MboII GAAGA 5 cut(s) 123, 602, 757, 770, 819
MflI RGATCY 1 cut(s) 385
MhlI GDGCHC 1 cut(s) 104
MluCI AATT 1 cut(s) 684
MlyI GAGTC 1 cut(s) 808
MmeI TCCRAC 1 cut(s) 177
MnlI CCTC 4 cut(s) 567, 670, 796, 828
MseI TTAA 1 cut(s) 390
MslI CAYNNNNRTG 2 cut(s) 97, 162
MspA1I CMGCKG 1 cut(s) 536
MspI CCGG 2 cut(s) 65, 495
MvnI CGCG 2 cut(s) 53, 218
MwoI GCNNNNNNNGC 2 cut(s) 59, 407
NdeII GATC 7 cut(s) 166, 171, 385, 396, 553, 644, 775
NlaIII CATG 3 cut(s) 34, 195, 507
NmuCI GTSAC 1 cut(s) 737
OliI CACNNNNGTG 1 cut(s) 97
PciSI GCTCTTC 1 cut(s) 753
PcsI WCGNNNNNNNCGW 1 cut(s) 104
PfeI GAWTC 1 cut(s) 656
PkrI GCNGC 6 cut(s) 7, 61, 265, 535, 538, 838
PleI GAGTC 1 cut(s) 808
PmaCI CACGTG 1 cut(s) 99
PmlI CACGTG 1 cut(s) 99
PpsI GAGTC 1 cut(s) 808
Ppu21I YACGTR 1 cut(s) 99
PshAI GACNNNNGTC 1 cut(s) 599
PspCI CACGTG 1 cut(s) 99
PspFI CCCAGC 1 cut(s) 779
PstI CTGCAG 1 cut(s) 412
PsuI RGATCY 1 cut(s) 385
RsaI GTAC 2 cut(s) 35, 807
RsaNI GTAC 2 cut(s) 34, 806
RseI CAYNNNNRTG 2 cut(s) 97, 162
SapI GCTCTTC 1 cut(s) 753
SaqAI TTAA 1 cut(s) 390
SatI GCNGC 6 cut(s) 6, 60, 264, 534, 537, 837
Sau3AI GATC 7 cut(s) 166, 171, 385, 396, 553, 644, 775
SchI GAGTC 1 cut(s) 808
SduI GDGCHC 1 cut(s) 104
SfaNI GCATC 1 cut(s) 776
SfcI CTRYAG 1 cut(s) 408
SmiMI CAYNNNNRTG 2 cut(s) 97, 162
Sse9I AATT 1 cut(s) 684
SsiI CCGC 4 cut(s) 51, 218, 536, 836
SspI AATATT 2 cut(s) 128, 792
SspMI CTAG 2 cut(s) 314, 528
TaaI ACNGT 3 cut(s) 286, 457, 810
TaiI ACGT 3 cut(s) 101, 110, 152
TaqI TCGA 3 cut(s) 134, 359, 647
TasI AATT 1 cut(s) 684
TatI WGTACW 1 cut(s) 33
TauI GCSGC 2 cut(s) 539, 839
TfiI GAWTC 1 cut(s) 656
Tru1I TTAA 1 cut(s) 390
Tru9I TTAA 1 cut(s) 390
TscAI CASTG 2 cut(s) 381, 742
TseFI GTSAC 1 cut(s) 737
TseI GCWGC 4 cut(s) 5, 59, 263, 533
Tsp45I GTSAC 1 cut(s) 737
TspDTI ATGAA 4 cut(s) 158, 345, 603, 669
TspGWI ACGGA 1 cut(s) 398
TspRI CASTG 2 cut(s) 381, 742
VneI GTGCAC 1 cut(s) 100
XbaI TCTAGA 1 cut(s) 527
XcmI CCANNNNNNNNNTGG 1 cut(s) 604
XspI CTAG 2 cut(s) 314, 528
ZraI GACGTC 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.