Rroxscaffold_2G00078310

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0006404
Physical Location & Seq
Reverse (-)
1645123 .. 1647178
2056 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00078310.1

Sequence Viewer

Length: 1119 bp
ATGCTTGTTCTCATATATATCGTTTGTCGCCCCACTACAAATCTAGACAGAGCTTCCACTCTCCTTTCAATTGCTTCCCCTCTCCTTTCAATTCAAAGCTCCATACTCGATACAACCTTCATGGCAACAGCTGCGCTGCTCATTGAAGCCAACCCATTAATGAAATTGAAGCAAAACACCCTATTACGCACTTTTCGTCCTCTTCCATCAAAACCAATCGCATTAACGTTTAGCAATCAACGTTGCTTTGCTCCTAGAATATTTAAGAACCCTAAACCTCGATGTTTCTTGCCCGCCGACTCTAAATGTCATCCCTCTCAATCTCAGTCCCTCAATGTTCTTAAAGATAATCGGCCAGCGGCAGCAAACCCTAATTTCACAGTCGCCGTTAATAAGGTATGGGAAAAGTGTCACAGGGCATTGAGGGAACCAGCAATGGCTGCCGTGCTGTTTGGTTTGTTAGTCATGTGCAACCCCAACTCAGCAGCGTTGGCTGCTCCGGTGGGTCGGGTCGGTGGAAGCTTGACACTCACGCGTACGACGTTGCACCATCCATCCAAATATTCTTCGACCACAGCGGCCGACCACTACGATGATCCGATCTGGGAAATTGCATTCCATTTTTTCTTTATTTTATACTGTCTCTGGGGATTGTTTGCGTTGCTTTCGCCTTACCCCAAGTTTTACACGGCTGCTTTGTTTATTTTCGGGACAGTTTTCACCGCTATTTGGGTTCACTCTCTAGGTCAAACAAGTGTTGTCAAGCTCCAGCTTCAGGTGGGTGTATCAAAGTTCACTAGAGCGGCTGCACAGCAATGCTTTGATAAAATTGTGTTCAGAGAGAGGGTTAGATATGACGAAGAGACCATTGTCAATGTGGACAATATAAAAACTCAAAGCACAACAAGTCAGAGATCAACTAATGAATCTCACAATGACAATGTAGAGGTTACAATTTTACTTGCTGTTGATGGAAAGTCTAAGCTGCCCACTATCATTGACAGCAGTGATTTGAAGAAAGTGATGGAAGAGCTTGCATCCATTGATCCCAACAGACTACTTTTAGGAGTAGAGGTACTGTGGACTCCTCAGTTCTCTTCACATGCGGCAAGCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

372

Amino Acids

41.34

Weight (kDa)

9.31

Isoelectric Point (pI)

40.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1517 PF07466 260 - 366 7.6e-23 Protein of unknown function (DUF1517)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 803
AccII CGCG 1 cut(s) 535
AciI CCGC 6 cut(s) 294, 359, 578, 723, 803, 1106
AclI AACGTT 2 cut(s) 227, 241
AclWI GGATC 2 cut(s) 590, 1040
AcoI YGGCCR 2 cut(s) 353, 579
AcuI CTGAAG 1 cut(s) 758
AfaI GTAC 2 cut(s) 538, 1077
AfiI CCNNNNNNNGG 2 cut(s) 729, 775
AflIII ACRYGT 1 cut(s) 533
AgsI TTSAA 6 cut(s) 69, 90, 95, 146, 169, 1015
AluBI AGCT 8 cut(s) 53, 99, 131, 522, 766, 772, 985, 1033
AluI AGCT 8 cut(s) 53, 99, 131, 522, 766, 772, 985, 1033
Alw26I GTCTC 2 cut(s) 647, 857
AlwI GGATC 2 cut(s) 590, 1040
AoxI GGCC 2 cut(s) 353, 579
ApeKI GCWGC 9 cut(s) 131, 136, 362, 440, 485, 494, 692, 806, 985
AseI ATTAAT 1 cut(s) 158
AspLEI GCGC 1 cut(s) 136
AsuHPI GGTGA 1 cut(s) 712
BbvI GCAGC 9 cut(s) 118, 123, 374, 427, 481, 497, 679, 793, 972
BccI CCATC 5 cut(s) 214, 558, 562, 965, 1018
BceAI ACGGC 3 cut(s) 371, 428, 705
BcoDI GTCTC 2 cut(s) 647, 857
BfaI CTAG 4 cut(s) 44, 255, 743, 798
BmiI GGNNCC 1 cut(s) 429
BmsI GCATC 1 cut(s) 1046
BoxI GACNNNNGTC 1 cut(s) 869
BpmI CTGGAG 1 cut(s) 752
BsaI GGTCTC 1 cut(s) 857
BsaWI WCCGGW 1 cut(s) 499
BsaXI ACNNNNNCTCC 2 cut(s) 1059, 1089
Bsc4I CCNNNNNNNGG 2 cut(s) 729, 775
Bse3DI GCAATG 2 cut(s) 441, 821
BseGI GGATG 4 cut(s) 310, 550, 554, 1037
BseLI CCNNNNNNNGG 2 cut(s) 729, 775
BseMI GCAATG 2 cut(s) 441, 821
BseMII CTCAG 3 cut(s) 338, 495, 1103
BseRI GAGGAG 1 cut(s) 1077
BseX3I CGGCCG 1 cut(s) 579
BseXI GCAGC 9 cut(s) 118, 123, 374, 427, 481, 497, 679, 793, 972
BsgI GTGCAG 1 cut(s) 792
Bsh1236I CGCG 1 cut(s) 535
Bsh1285I CGRYCG 1 cut(s) 582
BshFI GGCC 2 cut(s) 355, 581
BsiEI CGRYCG 1 cut(s) 582
BsiSI CCGG 1 cut(s) 500
BsiWI CGTACG 1 cut(s) 536
BslFI GGGAC 2 cut(s) 313, 724
BslI CCNNNNNNNGG 2 cut(s) 729, 775
BsmAI GTCTC 2 cut(s) 647, 857
BsmFI GGGAC 2 cut(s) 313, 724
BsmI GAATGC 1 cut(s) 614
BsnI GGCC 2 cut(s) 355, 581
Bso31I GGTCTC 1 cut(s) 857
Bsp143I GATC 4 cut(s) 595, 600, 914, 1045
BspACI CCGC 6 cut(s) 294, 359, 578, 723, 803, 1106
BspANI GGCC 2 cut(s) 355, 581
BspCNI CTCAG 3 cut(s) 337, 494, 1102
BspFNI CGCG 1 cut(s) 535
BspLI GGNNCC 1 cut(s) 429
BspPI GGATC 2 cut(s) 590, 1040
BspQI GCTCTTC 1 cut(s) 1023
BspTNI GGTCTC 1 cut(s) 857
BsrBI CCGCTC 1 cut(s) 803
BsrDI GCAATG 2 cut(s) 441, 821
BssMI GATC 4 cut(s) 595, 600, 914, 1045
Bst4CI ACNGT 4 cut(s) 382, 641, 715, 1080
Bst6I CTCTTC 4 cut(s) 207, 855, 1023, 1102
BstAPI GCANNNNNTGC 2 cut(s) 131, 440
BstC8I GCNNGC 4 cut(s) 294, 357, 1035, 1111
BstDEI CTNAG 4 cut(s) 324, 481, 981, 1089
BstF5I GGATG 4 cut(s) 310, 550, 554, 1037
BstFNI CGCG 1 cut(s) 535
BstHHI GCGC 1 cut(s) 136
BstKTI GATC 4 cut(s) 598, 603, 917, 1048
BstMAI GTCTC 2 cut(s) 647, 857
BstMBI GATC 4 cut(s) 595, 600, 914, 1045
BstMCI CGRYCG 1 cut(s) 582
BstMWI GCNNNNNNNGC 4 cut(s) 131, 440, 491, 494
BstNSI RCATGY 1 cut(s) 1106
BstPAI GACNNNNGTC 1 cut(s) 869
BstUI CGCG 1 cut(s) 535
BstV1I GCAGC 9 cut(s) 118, 123, 374, 427, 481, 497, 679, 793, 972
BstZI CGGCCG 1 cut(s) 579
BsuRI GGCC 2 cut(s) 355, 581
BtsCI GGATG 4 cut(s) 310, 550, 554, 1037
BtsI GCAGTG 1 cut(s) 1012
BtsIMutI CAGTG 1 cut(s) 1012
Cac8I GCNNGC 4 cut(s) 294, 357, 1035, 1111
CfoI GCGC 1 cut(s) 136
Csp6I GTAC 2 cut(s) 537, 1076
CspCI CAANNNNNGTGG 2 cut(s) 979, 1014
CviAII CATG 3 cut(s) 121, 466, 1103
CviQI GTAC 2 cut(s) 537, 1076
DdeI CTNAG 4 cut(s) 324, 481, 981, 1089
DpnI GATC 4 cut(s) 597, 602, 916, 1047
DpnII GATC 4 cut(s) 595, 600, 914, 1045
EaeI YGGCCR 2 cut(s) 353, 579
EagI CGGCCG 1 cut(s) 579
Eam1104I CTCTTC 4 cut(s) 207, 855, 1023, 1102
EarI CTCTTC 4 cut(s) 207, 855, 1023, 1102
EclXI CGGCCG 1 cut(s) 579
Eco31I GGTCTC 1 cut(s) 857
Eco52I CGGCCG 1 cut(s) 579
Eco57I CTGAAG 1 cut(s) 758
FaeI CATG 3 cut(s) 124, 469, 1106
FaqI GGGAC 2 cut(s) 313, 724
FatI CATG 3 cut(s) 120, 465, 1102
FauI CCCGC 1 cut(s) 301
FokI GGATG 4 cut(s) 297, 537, 541, 1024
FspBI CTAG 4 cut(s) 44, 255, 743, 798
GlaI GCGC 1 cut(s) 135
GsuI CTGGAG 1 cut(s) 752
HaeIII GGCC 2 cut(s) 355, 581
HapII CCGG 1 cut(s) 500
HhaI GCGC 1 cut(s) 136
Hin1II CATG 3 cut(s) 124, 469, 1106
Hin6I GCGC 1 cut(s) 134
HinP1I GCGC 1 cut(s) 134
HindIII AAGCTT 1 cut(s) 520
HinfI GANTC 3 cut(s) 299, 926, 1084
HpaII CCGG 1 cut(s) 500
HphI GGTGA 1 cut(s) 712
Hpy166II GTNNAC 4 cut(s) 736, 795, 880, 1083
Hpy188I TCNGA 3 cut(s) 600, 839, 912
Hpy188III TCNNGA 2 cut(s) 44, 709
Hpy8I GTNNAC 4 cut(s) 736, 795, 880, 1083
Hpy99I CGWCG 1 cut(s) 544
HpyAV CCTTC 1 cut(s) 127
HpyCH4III ACNGT 4 cut(s) 382, 641, 715, 1080
HpyCH4IV ACGT 3 cut(s) 227, 241, 542
HpyCH4V TGCA 5 cut(s) 471, 547, 614, 809, 1037
HpyF10VI GCNNNNNNNGC 4 cut(s) 131, 440, 491, 494
HpyF3I CTNAG 4 cut(s) 324, 481, 981, 1089
HpySE526I ACGT 3 cut(s) 227, 241, 542
Hsp92II CATG 3 cut(s) 124, 469, 1106
HspAI GCGC 1 cut(s) 134
Kzo9I GATC 4 cut(s) 595, 600, 914, 1045
LguI GCTCTTC 1 cut(s) 1023
LmnI GCTCC 4 cut(s) 104, 256, 502, 771
LpnPI CCDG 8 cut(s) 369, 400, 444, 513, 589, 631, 761, 782
Lsp1109I GCAGC 9 cut(s) 118, 123, 374, 427, 481, 497, 679, 793, 972
LweI GCATC 1 cut(s) 1046
MaeI CTAG 4 cut(s) 44, 255, 743, 798
MaeII ACGT 3 cut(s) 227, 241, 542
MaeIII GTNAC 2 cut(s) 410, 949
MalI GATC 4 cut(s) 597, 602, 916, 1047
MbiI CCGCTC 1 cut(s) 803
MboI GATC 4 cut(s) 595, 600, 914, 1045
MboII GAAGA 6 cut(s) 194, 558, 872, 1027, 1040, 1089
MfeI CAATTG 1 cut(s) 69
MluCI AATT 7 cut(s) 69, 90, 164, 373, 609, 828, 954
MluI ACGCGT 1 cut(s) 533
MlyI GAGTC 2 cut(s) 293, 1078
MseI TTAA 5 cut(s) 158, 224, 264, 342, 390
MslI CAYNNNNRTG 2 cut(s) 591, 814
MspA1I CMGCKG 3 cut(s) 131, 359, 578
MspI CCGG 1 cut(s) 500
MunI CAATTG 1 cut(s) 69
Mva1269I GAATGC 1 cut(s) 614
MvnI CGCG 1 cut(s) 535
MwoI GCNNNNNNNGC 4 cut(s) 131, 440, 491, 494
NdeII GATC 4 cut(s) 595, 600, 914, 1045
NlaIII CATG 3 cut(s) 124, 469, 1106
NlaIV GGNNCC 1 cut(s) 429
NmuCI GTSAC 1 cut(s) 410
NspI RCATGY 1 cut(s) 1106
PciSI GCTCTTC 1 cut(s) 1023
PcsI WCGNNNNNNNCGW 2 cut(s) 193, 539
PctI GAATGC 1 cut(s) 614
PfeI GAWTC 1 cut(s) 926
Pfl23II CGTACG 1 cut(s) 536
PleI GAGTC 2 cut(s) 293, 1078
PpsI GAGTC 2 cut(s) 293, 1078
PshAI GACNNNNGTC 1 cut(s) 869
PshBI ATTAAT 1 cut(s) 158
Psp1406I AACGTT 2 cut(s) 227, 241
PspLI CGTACG 1 cut(s) 536
PspN4I GGNNCC 1 cut(s) 429
PvuII CAGCTG 1 cut(s) 131
RsaI GTAC 2 cut(s) 538, 1077
RsaNI GTAC 2 cut(s) 537, 1076
RseI CAYNNNNRTG 2 cut(s) 591, 814
SapI GCTCTTC 1 cut(s) 1023
SaqAI TTAA 5 cut(s) 158, 224, 264, 342, 390
Sau3AI GATC 4 cut(s) 595, 600, 914, 1045
SchI GAGTC 2 cut(s) 293, 1078
SfaNI GCATC 1 cut(s) 1046
SmiMI CAYNNNNRTG 2 cut(s) 591, 814
Sse9I AATT 7 cut(s) 69, 90, 164, 373, 609, 828, 954
SsiI CCGC 6 cut(s) 294, 359, 578, 723, 803, 1106
SspI AATATT 2 cut(s) 261, 563
SspMI CTAG 4 cut(s) 44, 255, 743, 798
TaaI ACNGT 4 cut(s) 382, 641, 715, 1080
TaiI ACGT 3 cut(s) 230, 244, 545
TaqI TCGA 3 cut(s) 108, 280, 569
TasI AATT 7 cut(s) 69, 90, 164, 373, 609, 828, 954
TauI GCSGC 4 cut(s) 362, 581, 806, 1109
TfiI GAWTC 1 cut(s) 926
Tru1I TTAA 5 cut(s) 158, 224, 264, 342, 390
Tru9I TTAA 5 cut(s) 158, 224, 264, 342, 390
TscAI CASTG 1 cut(s) 1012
TseFI GTSAC 1 cut(s) 410
TseI GCWGC 9 cut(s) 131, 136, 362, 440, 485, 494, 692, 806, 985
Tsp45I GTSAC 1 cut(s) 410
TspDTI ATGAA 3 cut(s) 109, 176, 939
TspRI CASTG 1 cut(s) 1012
VspI ATTAAT 1 cut(s) 158
XbaI TCTAGA 1 cut(s) 43
XceI RCATGY 1 cut(s) 1106
XcmI CCANNNNNNNNNTGG 1 cut(s) 874
XspI CTAG 4 cut(s) 44, 255, 743, 798
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.