Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0006404

Physical Location & Seq

Genomic Coordinates Reverse (-)

81824985 .. 81826977

Gene Structure 1993 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022227

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGCAACAGCTGCGCTGCTCATCGAAGTCAACCCATTAATGAAATTGAAGCAAAACACCCTATTACGCACTTTTCGCCCTCTTCCATCAAAACCAATCACATTAACTTTTAGCAATCAACGTTGCTTTGCTCCCAGAATATTTAAGAACCCTAAAGCTCAATGTTTCTTGCCCGCCGACTCTAAATCAGGCCATCCTTCTCAGTCTCAGTTCCTCAATGTTCTTAAAGATAATCGGCCAGCTGCAGCAAACCCTAATTTCACAGTCGCCGTTAATAAGTTATGGGAAAAGTGTCACAAGGCATTGAGGAAACCAGCAATGGCTGCCGTGCTGTTGGGTTTGTTAGTCATGTACAATCCCAACTCAGCAGCGTTGGCTGCTCCGGTGGGTCGGGTCGGTGGAAGCTTGACGCCCACCCGTACGACGTTGCACAATCCATCTAAATATTGTTCGACCACAATCACAACTTCCGACCACTACGATGATCCGATCTGGGAGTTTGCAGCCTGTTCGTTCTTTATTTTCTGCATTTTCGGATCTATTGCGTGTCTTTCGCCTCTCTCTAAGTTTAACAAGGCTGCCCTGTTTACTTTCGGGACAGTTTTCATCGCTATTTGGGTTCACTCTCTAGGTCAAACAAGTGTTGTCAAGCTCCAGCTTCTGGTTACAATTTTACTTGCTGTTGAAGGAAAGTCTAAGTTGCCCACTATCATTGACAGCAGTGACTTGAAGAAAGTGATGGAAGAGCTTGCATCCATTGATCCCAGCAGACTACTATTATGCAGCCCGACCCCCAAATTGGCAACCAGCAAATCCAGGAAGTCTCAAGCTGGTCGCAGTGGCGGTTCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1517

Protein Analysis

285

Amino Acids

30.82

Weight (kDa)

9.88

Isoelectric Point (pI)

45.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006404)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g07650 FvH4_4g23690
rosa_chinensis	RchiOBHm_Chr2g0174231
rosa_laevigata	RLG00000022227
rosa_multiflora	Rmu_sc0000954.1_g000010 Rmu_sc0003188.1_g000015 Rmu_sc0007150.1_g000008
rosa_roxburghii	Rroxscaffold_160G00433820 Rroxscaffold_2G00078310 Rroxscaffold_2G00078580 Rroxscaffold_4G00327970 Rroxscaffold_5G00372130
rosa_rugosa	Rorug02G0573200 Rorug02G0573600
rosa_samantha	Rh1DG179600 Rh2AG652200 Rh2AG652400 Rh2AG656000 Rh2BG663000 Rh2BG663200 Rh2BG667200 Rh2CG627600 Rh2CG628100 Rh2DG678100 Rh2DG678500 Rh4CG321100
rosa_wichuraiana	Rw2G053580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	661
AciI	CCGC	2 cut(s)	174, 843
AclI	AACGTT	1 cut(s)	121
AclWI	GGATC	3 cut(s)	479, 544, 755
AcoI	YGGCCR	1 cut(s)	236
AcyI	GRCGYC	1 cut(s)	410
AfaI	GTAC	2 cut(s)	353, 421
AfiI	CCNNNNNNNGG	2 cut(s)	661, 799
AgsI	TTSAA	3 cut(s)	49, 686, 730
AjnI	CCWGG	1 cut(s)	815
AluBI	AGCT	8 cut(s)	11, 158, 242, 405, 652, 658, 748, 830
AluI	AGCT	8 cut(s)	11, 158, 242, 405, 652, 658, 748, 830
Alw26I	GTCTC	2 cut(s)	210, 828
AlwI	GGATC	3 cut(s)	479, 544, 755
AlwNI	CAGNNNCTG	1 cut(s)	661
AoxI	GGCC	2 cut(s)	190, 236
AseI	ATTAAT	1 cut(s)	38
AspLEI	GCGC	1 cut(s)	16
BbvI	GCAGC	9 cut(s)	3, 229, 257, 310, 364, 380, 515, 565, 795
BccI	CCATC	4 cut(s)	94, 201, 445, 733
BceAI	ACGGC	2 cut(s)	254, 311
BcgI	CGANNNNNNTGC	2 cut(s)	492, 526
BciT130I	CCWGG	1 cut(s)	817
BcoDI	GTCTC	2 cut(s)	210, 828
BfaI	CTAG	1 cut(s)	629
BfmI	CTRYAG	1 cut(s)	243
Bme1390I	CCNGG	1 cut(s)	817
BmrFI	CCNGG	1 cut(s)	817
BmsI	GCATC	1 cut(s)	761
BpmI	CTGGAG	1 cut(s)	638
BpuEI	CTTGAG	1 cut(s)	810
BsaHI	GRCGYC	1 cut(s)	410
BsaWI	WCCGGW	1 cut(s)	382
Bsc4I	CCNNNNNNNGG	2 cut(s)	661, 799
Bse3DI	GCAATG	1 cut(s)	324
BseBI	CCWGG	1 cut(s)	817
BseGI	GGATG	2 cut(s)	193, 752
BseLI	CCNNNNNNNGG	2 cut(s)	661, 799
BseMI	GCAATG	1 cut(s)	324
BseMII	CTCAG	3 cut(s)	215, 221, 378
BseXI	GCAGC	9 cut(s)	3, 229, 257, 310, 364, 380, 515, 565, 795
BseYI	CCCAGC	1 cut(s)	764
BshFI	GGCC	2 cut(s)	192, 238
BsiSI	CCGG	1 cut(s)	383
BsiWI	CGTACG	1 cut(s)	419
BslFI	GGGAC	1 cut(s)	610
BslI	CCNNNNNNNGG	2 cut(s)	661, 799
BsmAI	GTCTC	2 cut(s)	210, 828
BsmFI	GGGAC	1 cut(s)	610
BsnI	GGCC	2 cut(s)	192, 238
Bsp1407I	TGTACA	1 cut(s)	351
Bsp143I	GATC	4 cut(s)	484, 489, 536, 760
BspACI	CCGC	2 cut(s)	174, 843
BspANI	GGCC	2 cut(s)	192, 238
BspCNI	CTCAG	3 cut(s)	214, 220, 377
BspMAI	CTGCAG	1 cut(s)	247
BspPI	GGATC	3 cut(s)	479, 544, 755
BspQI	GCTCTTC	1 cut(s)	738
BsrDI	GCAATG	1 cut(s)	324
BsrGI	TGTACA	1 cut(s)	351
BssMI	GATC	4 cut(s)	484, 489, 536, 760
BssNI	GRCGYC	1 cut(s)	410
Bst2UI	CCWGG	1 cut(s)	817
Bst4CI	ACNGT	2 cut(s)	265, 601
Bst6I	CTCTTC	2 cut(s)	87, 738
BstACI	GRCGYC	1 cut(s)	410
BstAPI	GCANNNNNTGC	2 cut(s)	11, 323
BstAUI	TGTACA	1 cut(s)	351
BstC8I	GCNNGC	3 cut(s)	174, 240, 750
BstDEI	CTNAG	5 cut(s)	201, 207, 364, 564, 696
BstF5I	GGATG	2 cut(s)	193, 752
BstHHI	GCGC	1 cut(s)	16
BstKTI	GATC	4 cut(s)	487, 492, 539, 763
BstMAI	GTCTC	2 cut(s)	210, 828
BstMBI	GATC	4 cut(s)	484, 489, 536, 760
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 75, 323, 374, 377
BstNI	CCWGG	1 cut(s)	817
BstSCI	CCNGG	1 cut(s)	815
BstSFI	CTRYAG	1 cut(s)	243
BstV1I	GCAGC	9 cut(s)	3, 229, 257, 310, 364, 380, 515, 565, 795
BstX2I	RGATCY	1 cut(s)	536
BstYI	RGATCY	1 cut(s)	536
BsuRI	GGCC	2 cut(s)	192, 238
BtgZI	GCGATG	1 cut(s)	592
BtsCI	GGATG	2 cut(s)	193, 752
BtsI	GCAGTG	2 cut(s)	727, 844
BtsIMutI	CAGTG	2 cut(s)	727, 844
Cac8I	GCNNGC	3 cut(s)	174, 240, 750
CaiI	CAGNNNCTG	1 cut(s)	661
CfoI	GCGC	1 cut(s)	16
CseI	GACGC	1 cut(s)	418
Csp6I	GTAC	2 cut(s)	352, 420
CspCI	CAANNNNNGTGG	2 cut(s)	694, 729
CviAII	CATG	1 cut(s)	349
CviQI	GTAC	2 cut(s)	352, 420
DdeI	CTNAG	5 cut(s)	201, 207, 364, 564, 696
DpnI	GATC	4 cut(s)	486, 491, 538, 762
DpnII	GATC	4 cut(s)	484, 489, 536, 760
EaeI	YGGCCR	1 cut(s)	236
Eam1104I	CTCTTC	2 cut(s)	87, 738
EarI	CTCTTC	2 cut(s)	87, 738
EcoRII	CCWGG	1 cut(s)	815
FaeI	CATG	1 cut(s)	352
FaiI	YATR	3 cut(s)	283, 350, 781
FaqI	GGGAC	1 cut(s)	610
FatI	CATG	1 cut(s)	348
FauI	CCCGC	1 cut(s)	181
FokI	GGATG	2 cut(s)	180, 739
FspBI	CTAG	1 cut(s)	629
GlaI	GCGC	1 cut(s)	15
GsaI	CCCAGC	1 cut(s)	768
GsuI	CTGGAG	1 cut(s)	638
HaeIII	GGCC	2 cut(s)	192, 238
HapII	CCGG	1 cut(s)	383
HgaI	GACGC	1 cut(s)	418
HhaI	GCGC	1 cut(s)	16
Hin1I	GRCGYC	1 cut(s)	410
Hin1II	CATG	1 cut(s)	352
Hin6I	GCGC	1 cut(s)	14
HinP1I	GCGC	1 cut(s)	14
HincII	GTYRAC	1 cut(s)	31
HindII	GTYRAC	1 cut(s)	31
HindIII	AAGCTT	1 cut(s)	403
HinfI	GANTC	1 cut(s)	179
HpaII	CCGG	1 cut(s)	383
Hpy166II	GTNNAC	3 cut(s)	31, 588, 622
Hpy188I	TCNGA	3 cut(s)	472, 489, 536
Hpy188III	TCNNGA	1 cut(s)	595
Hpy8I	GTNNAC	3 cut(s)	31, 588, 622
Hpy99I	CGWCG	1 cut(s)	427
HpyAV	CCTTC	2 cut(s)	207, 680
HpyCH4III	ACNGT	2 cut(s)	265, 601
HpyCH4IV	ACGT	2 cut(s)	121, 425
HpyCH4V	TGCA	6 cut(s)	245, 430, 503, 528, 752, 783
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 75, 323, 374, 377
HpyF3I	CTNAG	5 cut(s)	201, 207, 364, 564, 696
HpySE526I	ACGT	2 cut(s)	121, 425
Hsp92I	GRCGYC	1 cut(s)	410
Hsp92II	CATG	1 cut(s)	352
HspAI	GCGC	1 cut(s)	14
Kzo9I	GATC	4 cut(s)	484, 489, 536, 760
LguI	GCTCTTC	1 cut(s)	738
LmnI	GCTCC	3 cut(s)	136, 385, 657
Lsp1109I	GCAGC	9 cut(s)	3, 229, 257, 310, 364, 380, 515, 565, 795
LweI	GCATC	1 cut(s)	761
MaeI	CTAG	1 cut(s)	629
MaeII	ACGT	2 cut(s)	121, 425
MaeIII	GTNAC	3 cut(s)	293, 664, 722
MalI	GATC	4 cut(s)	486, 491, 538, 762
MboI	GATC	4 cut(s)	484, 489, 536, 760
MboII	GAAGA	3 cut(s)	74, 742, 755
MflI	RGATCY	1 cut(s)	536
MluCI	AATT	4 cut(s)	44, 256, 669, 797
MlyI	GAGTC	1 cut(s)	173
MmeI	TCCRAC	1 cut(s)	495
MnlI	CCTC	4 cut(s)	90, 224, 300, 567
MseI	TTAA	6 cut(s)	38, 104, 144, 225, 273, 570
MslI	CAYNNNNRTG	1 cut(s)	480
MspA1I	CMGCKG	2 cut(s)	11, 242
MspI	CCGG	1 cut(s)	383
MspR9I	CCNGG	1 cut(s)	817
MvaI	CCWGG	1 cut(s)	817
MwoI	GCNNNNNNNGC	5 cut(s)	11, 75, 323, 374, 377
NdeII	GATC	4 cut(s)	484, 489, 536, 760
NlaIII	CATG	1 cut(s)	352
NmuCI	GTSAC	2 cut(s)	293, 722
PciSI	GCTCTTC	1 cut(s)	738
Pfl23II	CGTACG	1 cut(s)	419
PflMI	CCANNNNNTGG	1 cut(s)	661
PfoI	TCCNGGA	1 cut(s)	815
PleI	GAGTC	1 cut(s)	173
PpsI	GAGTC	1 cut(s)	173
PshBI	ATTAAT	1 cut(s)	38
Psp1406I	AACGTT	1 cut(s)	121
Psp6I	CCWGG	1 cut(s)	815
PspFI	CCCAGC	1 cut(s)	764
PspGI	CCWGG	1 cut(s)	815
PspLI	CGTACG	1 cut(s)	419
PstI	CTGCAG	1 cut(s)	247
PstNI	CAGNNNCTG	1 cut(s)	661
PsuI	RGATCY	1 cut(s)	536
PvuII	CAGCTG	2 cut(s)	11, 242
RsaI	GTAC	2 cut(s)	353, 421
RsaNI	GTAC	2 cut(s)	352, 420
RseI	CAYNNNNRTG	1 cut(s)	480
SapI	GCTCTTC	1 cut(s)	738
SaqAI	TTAA	6 cut(s)	38, 104, 144, 225, 273, 570
Sau3AI	GATC	4 cut(s)	484, 489, 536, 760
SchI	GAGTC	1 cut(s)	173
ScrFI	CCNGG	1 cut(s)	817
SfaNI	GCATC	1 cut(s)	761
SfcI	CTRYAG	1 cut(s)	243
SmiMI	CAYNNNNRTG	1 cut(s)	480
SmlI	CTYRAG	1 cut(s)	825
SmoI	CTYRAG	1 cut(s)	825
Sse9I	AATT	4 cut(s)	44, 256, 669, 797
SsiI	CCGC	2 cut(s)	174, 843
SspI	AATATT	2 cut(s)	141, 446
SspMI	CTAG	1 cut(s)	629
StyD4I	CCNGG	1 cut(s)	815
TaaI	ACNGT	2 cut(s)	265, 601
TaiI	ACGT	2 cut(s)	124, 428
TaqI	TCGA	2 cut(s)	24, 452
TasI	AATT	4 cut(s)	44, 256, 669, 797
TatI	WGTACW	1 cut(s)	351
Tru1I	TTAA	6 cut(s)	38, 104, 144, 225, 273, 570
Tru9I	TTAA	6 cut(s)	38, 104, 144, 225, 273, 570
TscAI	CASTG	2 cut(s)	727, 844
TseFI	GTSAC	2 cut(s)	293, 722
Tsp45I	GTSAC	2 cut(s)	293, 722
TspDTI	ATGAA	2 cut(s)	56, 595
TspRI	CASTG	2 cut(s)	727, 844
Van91I	CCANNNNNTGG	1 cut(s)	661
VspI	ATTAAT	1 cut(s)	38
XspI	CTAG	1 cut(s)	629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.