Rorug02G0573600

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0006404
Physical Location & Seq
Forward (+)
69924238 .. 69925842
1605 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0573600.1

Sequence Viewer

Length: 1302 bp
ATGGAGTTATCACAGTGCTTAATAAATCATGGCTTCAAAGTCACATTCGTGAATACGGATCATACTCACGAGCGAGTCATGAATGCCGTAGCTGATGAAACTCATAGAGGAGATGATCAGCTTCATCTGGTTTCAATTCCAGATGGGTTAGAACCATGGGAGGACAGGAATGAGCTGGGTCAGTTATGTGAAGCAATATACCGAGTGATGCCTGGGAAGTTGGAGGAGCTCATAGAGAAGATCAATGGAGGGGAAGATGACAAAATAACTTGTGTCATTGCTGATTTCAGTATCGGGTGGGCTCTGGAAGTGGCAGGGAAAATGAATATCAAAAGTGTTGCCTTTTTTCCTGCGGCAGCTGCAGTTTTGGCTTTGAATTTTTCTATTCCACAGTTAATACATGAAGGAATCATTAATAGTGATGGAACTGTATCAAAAGGCCAAGTGATTCACTTGGCACCAAACATGCCCATCATGAAGACCGAAGACATGCCGTGGTTATGCTTTGATGGCTTAGCCACTCAGAAAATTATATTTCAAGTCGGACAAAGAAACAACAAAGCTGCGAAACTGGCAGGCTGGGTTATTTGCAACTCAGCATTTGACCTCGAACCAGCAGCATTTGCCTTGGCACCCGAGATTTTACCAATAGGCCCTCTTTTGGCAAGCAGCCGGCTTGGAAAAACAGCAGGCAACTTCTGGCCAACGGATTCCACTTGCTTGGATTGGCTCGATCAACAACCTCCTTGCTCAGTCATCTATGTTGCATTTGGAAGCTTCACAGTTTTTGATCAAACCCAGTTCCAAGAATTGGCTTTAGGTCTTGAACTGTCCAATAGGCCATTCCTGTGGGTTGTGAGGCCAGACATCTCTGAAAGTACTCCCTATCCAGAAGGATACCAAGAACGAGTAGGCTCTAAGGGAATGATGGTGGGATGGGCACCCCAACAGAAGGTTCTATCCCATCCTTCAATTGCTTGCTTCCTAAGTCACTGTGGTTGGAACTCTACCATGGAAGGTGTAAGCAATGGGCTTCCTTTCTTGTGCTGGCCATATTTTGCTGACCAGCTCTTTAACGAGGGCTACATTTGCGATGTTTGGGAGGTGGGATTGAGGTTTGATAAGAATAAGAGTGGAATCATCCCGAAAGGAGAAATCAAGAACAAGGTGGAACAACTTCTTGGAGACGAAAATTATAGAGCAAGGGCTTCTAAACTCAAGGAAATGGCCATCACTAATGTCGAAGAAGGAGGCCAATCTAACAAGATCTTCAAGAATTTAATTGAATGGATAAAGTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

433

Amino Acids

48.13

Weight (kDa)

5.01

Isoelectric Point (pI)

32.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 252 - 407 3.2e-19 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 457, 631, 940
AccB7I CCANNNNNTGG 1 cut(s) 811
AciI CCGC 1 cut(s) 353
AclWI GGATC 1 cut(s) 66
AcoI YGGCCR 3 cut(s) 701, 1049, 1227
AcsI RAATTY 2 cut(s) 376, 1276
AfaI GTAC 1 cut(s) 880
AfiI CCNNNNNNNGG 3 cut(s) 661, 811, 952
AgsI TTSAA 8 cut(s) 37, 135, 376, 539, 827, 972, 1273, 1286
AjnI CCWGG 1 cut(s) 211
AjuI GAANNNNNNNTTGG 6 cut(s) 827, 859, 939, 971, 1164, 1196
AleI CACNNNNGTG 1 cut(s) 47
AluBI AGCT 8 cut(s) 92, 121, 175, 229, 359, 563, 777, 1069
AluI AGCT 8 cut(s) 92, 121, 175, 229, 359, 563, 777, 1069
Alw21I GWGCWC 1 cut(s) 231
Alw26I GTCTC 1 cut(s) 1179
AlwI GGATC 1 cut(s) 66
Ama87I CYCGRG 1 cut(s) 635
AoxI GGCC 8 cut(s) 439, 652, 701, 839, 860, 1049, 1227, 1252
ApeKI GCWGC 5 cut(s) 356, 359, 563, 617, 669
ApoI RAATTY 2 cut(s) 376, 1276
AseI ATTAAT 1 cut(s) 414
Asp700I GAANNNNTTC 1 cut(s) 1176
AspS9I GGNCC 1 cut(s) 653
AvaI CYCGRG 1 cut(s) 635
BaeGI GKGCMC 1 cut(s) 943
BalI TGGCCA 3 cut(s) 703, 1051, 1229
BanI GGYRCC 3 cut(s) 457, 631, 940
BanII GRGCYC 2 cut(s) 231, 304
BauI CACGAG 1 cut(s) 68
BbsI GAAGAC 2 cut(s) 485, 492
Bbv12I GWGCWC 1 cut(s) 231
BbvI GCAGC 5 cut(s) 346, 368, 550, 629, 681
BccI CCATC 8 cut(s) 137, 416, 479, 503, 922, 930, 972, 1238
BceAI ACGGC 2 cut(s) 71, 478
BciT130I CCWGG 1 cut(s) 213
BciVI GTATCC 1 cut(s) 890
BclI TGATCA 2 cut(s) 115, 790
BcoDI GTCTC 1 cut(s) 1179
BfmI CTRYAG 1 cut(s) 360
BfuI GTATCC 1 cut(s) 890
BglII AGATCT 1 cut(s) 1266
BisI GCNGC 6 cut(s) 354, 357, 360, 564, 618, 670
BlpI GCTNAGC 1 cut(s) 514
BlsI GCNGC 6 cut(s) 355, 358, 361, 565, 619, 671
BmcAI AGTACT 1 cut(s) 880
Bme1390I CCNGG 1 cut(s) 213
BmeT110I CYCGRG 1 cut(s) 635
BmgT120I GGNCC 1 cut(s) 653
BmiI GGNNCC 3 cut(s) 459, 633, 942
BmrFI CCNGG 1 cut(s) 213
BmrI ACTGGG 1 cut(s) 793
BmsI GCATC 1 cut(s) 198
BmuI ACTGGG 1 cut(s) 793
BpiI GAAGAC 2 cut(s) 485, 492
Bpu1102I GCTNAGC 1 cut(s) 514
BpuEI CTTGAG 1 cut(s) 1202
BsaJI CCNNGG 5 cut(s) 155, 212, 494, 627, 1011
Bsc4I CCNNNNNNNGG 3 cut(s) 661, 811, 952
Bse118I RCCGGY 1 cut(s) 672
Bse1I ACTGG 2 cut(s) 576, 799
Bse3DI GCAATG 2 cut(s) 276, 1033
BseBI CCWGG 1 cut(s) 213
BseDI CCNNGG 5 cut(s) 155, 212, 494, 627, 1011
BseGI GGATG 3 cut(s) 941, 964, 1140
BseLI CCNNNNNNNGG 3 cut(s) 661, 811, 952
BseMI GCAATG 2 cut(s) 276, 1033
BseMII CTCAG 3 cut(s) 536, 609, 765
BseNI ACTGG 2 cut(s) 576, 799
BseRI GAGGAG 2 cut(s) 123, 239
BseSI GKGCMC 1 cut(s) 943
BseXI GCAGC 5 cut(s) 346, 368, 550, 629, 681
BseYI CCCAGC 2 cut(s) 175, 579
BshFI GGCC 8 cut(s) 441, 654, 703, 841, 862, 1051, 1229, 1254
BshNI GGYRCC 3 cut(s) 457, 631, 940
BsiHKAI GWGCWC 1 cut(s) 231
BsiHKCI CYCGRG 1 cut(s) 635
BsiSI CCGG 1 cut(s) 673
BslI CCNNNNNNNGG 3 cut(s) 661, 811, 952
BsmAI GTCTC 1 cut(s) 1179
BsmBI CGTCTC 1 cut(s) 1179
BsmI GAATGC 1 cut(s) 88
BsnI GGCC 8 cut(s) 441, 654, 703, 841, 862, 1051, 1229, 1254
BsoBI CYCGRG 1 cut(s) 635
Bsp1286I GDGCHC 3 cut(s) 231, 304, 943
Bsp143I GATC 6 cut(s) 58, 115, 240, 733, 790, 1266
Bsp1720I GCTNAGC 1 cut(s) 514
Bsp19I CCATGG 2 cut(s) 155, 1011
BspACI CCGC 1 cut(s) 353
BspANI GGCC 8 cut(s) 441, 654, 703, 841, 862, 1051, 1229, 1254
BspCNI CTCAG 3 cut(s) 535, 608, 764
BspHI TCATGA 2 cut(s) 78, 474
BspLI GGNNCC 3 cut(s) 459, 633, 942
BspMAI CTGCAG 1 cut(s) 364
BspPI GGATC 1 cut(s) 66
BspT107I GGYRCC 3 cut(s) 457, 631, 940
BsrDI GCAATG 2 cut(s) 276, 1033
BsrFI RCCGGY 1 cut(s) 672
BsrI ACTGG 2 cut(s) 576, 799
BssAI RCCGGY 1 cut(s) 672
BssECI CCNNGG 5 cut(s) 155, 212, 494, 627, 1011
BssMI GATC 6 cut(s) 58, 115, 240, 733, 790, 1266
BssSI CACGAG 1 cut(s) 68
BssT1I CCWWGG 3 cut(s) 155, 627, 1011
Bst2BI CACGAG 1 cut(s) 68
Bst2UI CCWGG 1 cut(s) 213
Bst4CI ACNGT 6 cut(s) 15, 393, 430, 784, 831, 995
BstAPI GCANNNNNTGC 1 cut(s) 623
BstC8I GCNNGC 6 cut(s) 577, 667, 674, 691, 979, 1049
BstDEI CTNAG 6 cut(s) 514, 522, 595, 751, 918, 986
BstDSI CCRYGG 3 cut(s) 155, 494, 1011
BstF5I GGATG 3 cut(s) 941, 964, 1140
BstKTI GATC 6 cut(s) 61, 118, 243, 736, 793, 1269
BstMAI GTCTC 1 cut(s) 1179
BstMBI GATC 6 cut(s) 58, 115, 240, 733, 790, 1266
BstMWI GCNNNNNNNGC 6 cut(s) 359, 368, 510, 572, 623, 1089
BstNI CCWGG 1 cut(s) 213
BstNSI RCATGY 2 cut(s) 469, 493
BstSCI CCNGG 1 cut(s) 211
BstSFI CTRYAG 1 cut(s) 360
BstSLI GKGCMC 1 cut(s) 943
BstV1I GCAGC 5 cut(s) 346, 368, 550, 629, 681
BstV2I GAAGAC 2 cut(s) 485, 492
BstX2I RGATCY 1 cut(s) 1266
BstXI CCANNNNNNTGG 2 cut(s) 721, 849
BstYI RGATCY 1 cut(s) 1266
BsuI GTATCC 1 cut(s) 890
BsuRI GGCC 8 cut(s) 441, 654, 703, 841, 862, 1051, 1229, 1254
BtgI CCRYGG 3 cut(s) 155, 494, 1011
BtgZI GCGATG 1 cut(s) 1107
BtsCI GGATG 3 cut(s) 941, 964, 1140
BtsIMutI CAGTG 2 cut(s) 20, 991
Cac8I GCNNGC 6 cut(s) 577, 667, 674, 691, 979, 1049
CciI TCATGA 2 cut(s) 78, 474
Cfr10I RCCGGY 1 cut(s) 672
Cfr13I GGNCC 1 cut(s) 653
Csp6I GTAC 1 cut(s) 879
CviAII CATG 8 cut(s) 29, 79, 156, 401, 466, 475, 490, 1012
CviQI GTAC 1 cut(s) 879
DdeI CTNAG 6 cut(s) 514, 522, 595, 751, 918, 986
DpnI GATC 6 cut(s) 60, 117, 242, 735, 792, 1268
DpnII GATC 6 cut(s) 58, 115, 240, 733, 790, 1266
EaeI YGGCCR 3 cut(s) 701, 1049, 1227
Ecl136II GAGCTC 1 cut(s) 229
Eco130I CCWWGG 3 cut(s) 155, 627, 1011
Eco24I GRGCYC 2 cut(s) 231, 304
Eco53kI GAGCTC 1 cut(s) 229
Eco88I CYCGRG 1 cut(s) 635
EcoICRI GAGCTC 1 cut(s) 229
EcoO109I RGGNCCY 1 cut(s) 653
EcoRII CCWGG 1 cut(s) 211
EcoT14I CCWWGG 3 cut(s) 155, 627, 1011
EcoT38I GRGCYC 2 cut(s) 231, 304
ErhI CCWWGG 3 cut(s) 155, 627, 1011
Esp3I CGTCTC 1 cut(s) 1179
FaeI CATG 8 cut(s) 32, 82, 159, 404, 469, 478, 493, 1015
FatI CATG 8 cut(s) 28, 78, 155, 400, 465, 474, 489, 1011
FbaI TGATCA 2 cut(s) 115, 790
Fnu4HI GCNGC 6 cut(s) 354, 357, 360, 564, 618, 670
FokI GGATG 3 cut(s) 948, 951, 1127
FriOI GRGCYC 2 cut(s) 231, 304
Fsp4HI GCNGC 6 cut(s) 354, 357, 360, 564, 618, 670
GluI GCNGC 6 cut(s) 354, 357, 360, 564, 618, 670
GsaI CCCAGC 2 cut(s) 179, 583
HaeIII GGCC 8 cut(s) 441, 654, 703, 841, 862, 1051, 1229, 1254
HapII CCGG 1 cut(s) 673
Hin1II CATG 8 cut(s) 32, 82, 159, 404, 469, 478, 493, 1015
HindIII AAGCTT 1 cut(s) 775
HinfI GANTC 5 cut(s) 75, 408, 448, 710, 1137
HpaII CCGG 1 cut(s) 673
Hpy188I TCNGA 3 cut(s) 525, 545, 874
HpyAV CCTTC 6 cut(s) 398, 887, 946, 978, 1010, 1241
HpyCH4III ACNGT 6 cut(s) 15, 393, 430, 784, 831, 995
HpyCH4V TGCA 3 cut(s) 362, 591, 767
HpyF10VI GCNNNNNNNGC 6 cut(s) 359, 368, 510, 572, 623, 1089
HpyF3I CTNAG 6 cut(s) 514, 522, 595, 751, 918, 986
Hsp92II CATG 8 cut(s) 32, 82, 159, 404, 469, 478, 493, 1015
KroI GCCGGC 1 cut(s) 672
KroNI GCCGGC 1 cut(s) 674
Ksp22I TGATCA 2 cut(s) 115, 790
Kzo9I GATC 6 cut(s) 58, 115, 240, 733, 790, 1266
LmnI GCTCC 1 cut(s) 226
Lsp1109I GCAGC 5 cut(s) 346, 368, 550, 629, 681
LweI GCATC 1 cut(s) 198
MaeIII GTNAC 2 cut(s) 40, 989
MalI GATC 6 cut(s) 60, 117, 242, 735, 792, 1268
MboI GATC 6 cut(s) 58, 115, 240, 733, 790, 1266
MboII GAAGA 6 cut(s) 250, 266, 490, 497, 1256, 1261
MfeI CAATTG 1 cut(s) 972
MflI RGATCY 1 cut(s) 1266
MhlI GDGCHC 3 cut(s) 231, 304, 943
MlsI TGGCCA 3 cut(s) 703, 1051, 1229
MluCI AATT 8 cut(s) 135, 376, 528, 809, 972, 1192, 1276, 1281
MluNI TGGCCA 3 cut(s) 703, 1051, 1229
MlyI GAGTC 1 cut(s) 84
MmeI TCCRAC 3 cut(s) 201, 523, 980
Mox20I TGGCCA 3 cut(s) 703, 1051, 1229
MroNI GCCGGC 1 cut(s) 672
MroXI GAANNNNTTC 1 cut(s) 1176
MscI TGGCCA 3 cut(s) 703, 1051, 1229
MseI TTAA 5 cut(s) 20, 395, 414, 1074, 1280
MslI CAYNNNNRTG 2 cut(s) 47, 847
Msp20I TGGCCA 3 cut(s) 703, 1051, 1229
MspA1I CMGCKG 1 cut(s) 359
MspI CCGG 1 cut(s) 673
MspR9I CCNGG 1 cut(s) 213
MunI CAATTG 1 cut(s) 972
Mva1269I GAATGC 1 cut(s) 88
MvaI CCWGG 1 cut(s) 213
MwoI GCNNNNNNNGC 6 cut(s) 359, 368, 510, 572, 623, 1089
NaeI GCCGGC 1 cut(s) 674
NcoI CCATGG 2 cut(s) 155, 1011
NdeII GATC 6 cut(s) 58, 115, 240, 733, 790, 1266
NgoMIV GCCGGC 1 cut(s) 672
NlaIII CATG 8 cut(s) 32, 82, 159, 404, 469, 478, 493, 1015
NlaIV GGNNCC 3 cut(s) 459, 633, 942
NmuCI GTSAC 2 cut(s) 40, 989
NspI RCATGY 2 cut(s) 469, 493
OliI CACNNNNGTG 1 cut(s) 47
PagI TCATGA 2 cut(s) 78, 474
PctI GAATGC 1 cut(s) 88
PdiI GCCGGC 1 cut(s) 674
PdmI GAANNNNTTC 1 cut(s) 1176
PfeI GAWTC 4 cut(s) 408, 448, 710, 1137
PflMI CCANNNNNTGG 1 cut(s) 811
PkrI GCNGC 6 cut(s) 355, 358, 361, 565, 619, 671
PleI GAGTC 1 cut(s) 83
PpsI GAGTC 1 cut(s) 83
PshBI ATTAAT 1 cut(s) 414
Psp124BI GAGCTC 1 cut(s) 231
Psp6I CCWGG 1 cut(s) 211
PspFI CCCAGC 2 cut(s) 175, 579
PspGI CCWGG 1 cut(s) 211
PspN4I GGNNCC 3 cut(s) 459, 633, 942
PspPI GGNCC 1 cut(s) 653
PstI CTGCAG 1 cut(s) 364
PsuI RGATCY 1 cut(s) 1266
PvuII CAGCTG 1 cut(s) 359
RsaI GTAC 1 cut(s) 880
RsaNI GTAC 1 cut(s) 879
RseI CAYNNNNRTG 2 cut(s) 47, 847
SacI GAGCTC 1 cut(s) 231
SaqAI TTAA 5 cut(s) 20, 395, 414, 1074, 1280
SatI GCNGC 6 cut(s) 354, 357, 360, 564, 618, 670
Sau3AI GATC 6 cut(s) 58, 115, 240, 733, 790, 1266
Sau96I GGNCC 1 cut(s) 653
ScaI AGTACT 1 cut(s) 880
SchI GAGTC 1 cut(s) 84
ScrFI CCNGG 1 cut(s) 213
SduI GDGCHC 3 cut(s) 231, 304, 943
SfaNI GCATC 1 cut(s) 198
SfcI CTRYAG 1 cut(s) 360
SmiMI CAYNNNNRTG 2 cut(s) 47, 847
SmlI CTYRAG 1 cut(s) 1217
SmoI CTYRAG 1 cut(s) 1217
Sse9I AATT 8 cut(s) 135, 376, 528, 809, 972, 1192, 1276, 1281
SsiI CCGC 1 cut(s) 353
SstI GAGCTC 1 cut(s) 231
StyD4I CCNGG 1 cut(s) 211
StyI CCWWGG 3 cut(s) 155, 627, 1011
TaaI ACNGT 6 cut(s) 15, 393, 430, 784, 831, 995
TaqI TCGA 3 cut(s) 609, 732, 1242
TaqII GACCGA 1 cut(s) 497
TasI AATT 8 cut(s) 135, 376, 528, 809, 972, 1192, 1276, 1281
TatI WGTACW 1 cut(s) 878
TauI GCSGC 1 cut(s) 356
TfiI GAWTC 4 cut(s) 408, 448, 710, 1137
Tru1I TTAA 5 cut(s) 20, 395, 414, 1074, 1280
Tru9I TTAA 5 cut(s) 20, 395, 414, 1074, 1280
TscAI CASTG 2 cut(s) 20, 998
TseFI GTSAC 2 cut(s) 40, 989
TseI GCWGC 5 cut(s) 356, 359, 563, 617, 669
Tsp45I GTSAC 2 cut(s) 40, 989
TspDTI ATGAA 6 cut(s) 95, 111, 113, 338, 417, 491
TspGWI ACGGA 2 cut(s) 71, 722
TspRI CASTG 2 cut(s) 20, 998
Van91I CCANNNNNTGG 1 cut(s) 811
VspI ATTAAT 1 cut(s) 414
XapI RAATTY 2 cut(s) 376, 1276
XceI RCATGY 2 cut(s) 469, 493
XmnI GAANNNNTTC 1 cut(s) 1176
ZrmI AGTACT 1 cut(s) 880
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.