No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_4g07650 FvH4_4g23690 |
| rosa_chinensis | RchiOBHm_Chr2g0174231 |
| rosa_laevigata | RLG00000022227 |
| rosa_multiflora | Rmu_sc0000954.1_g000010 Rmu_sc0003188.1_g000015 Rmu_sc0007150.1_g000008 |
| rosa_roxburghii | Rroxscaffold_160G00433820 Rroxscaffold_2G00078310 Rroxscaffold_2G00078580 Rroxscaffold_4G00327970 Rroxscaffold_5G00372130 |
| rosa_rugosa | Rorug02G0573200 Rorug02G0573600 |
| rosa_samantha | Rh1DG179600 Rh2AG652200 Rh2AG652400 Rh2AG656000 Rh2BG663000 Rh2BG663200 Rh2BG667200 Rh2CG627600 Rh2CG628100 Rh2DG678100 Rh2DG678500 Rh4CG321100 |
| rosa_wichuraiana | Rw2G053580 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 177, 198, 291 |
| AclI | AACGTT | 2 cut(s) | 113, 127 |
| AcoI | YGGCCR | 1 cut(s) | 260 |
| AgsI | TTSAA | 3 cut(s) | 40, 46, 250 |
| Alw26I | GTCTC | 1 cut(s) | 234 |
| AoxI | GGCC | 1 cut(s) | 260 |
| ApeKI | GCWGC | 3 cut(s) | 16, 266, 269 |
| AspLEI | GCGC | 1 cut(s) | 16 |
| AsuHPI | GGTGA | 1 cut(s) | 187 |
| BbsI | GAAGAC | 1 cut(s) | 191 |
| BbvI | GCAGC | 3 cut(s) | 3, 278, 281 |
| BccI | CCATC | 2 cut(s) | 91, 225 |
| BceAI | ACGGC | 1 cut(s) | 278 |
| BcoDI | GTCTC | 1 cut(s) | 234 |
| BfaI | CTAG | 1 cut(s) | 141 |
| BisI | GCNGC | 4 cut(s) | 17, 267, 270, 291 |
| BlsI | GCNGC | 4 cut(s) | 18, 268, 271, 292 |
| BpiI | GAAGAC | 1 cut(s) | 191 |
| BpuEI | CTTGAG | 1 cut(s) | 305 |
| Bse1I | ACTGG | 2 cut(s) | 30, 342 |
| Bse3DI | GCAATG | 1 cut(s) | 348 |
| BseGI | GGATG | 1 cut(s) | 217 |
| BseMI | GCAATG | 1 cut(s) | 348 |
| BseMII | CTCAG | 1 cut(s) | 245 |
| BseNI | ACTGG | 2 cut(s) | 30, 342 |
| BseXI | GCAGC | 3 cut(s) | 3, 278, 281 |
| BshFI | GGCC | 1 cut(s) | 262 |
| BsmAI | GTCTC | 1 cut(s) | 234 |
| BsnI | GGCC | 1 cut(s) | 262 |
| BspACI | CCGC | 3 cut(s) | 177, 198, 291 |
| BspANI | GGCC | 1 cut(s) | 262 |
| BspCNI | CTCAG | 1 cut(s) | 244 |
| BsrDI | GCAATG | 1 cut(s) | 348 |
| BsrI | ACTGG | 2 cut(s) | 30, 342 |
| Bst6I | CTCTTC | 1 cut(s) | 84 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 11 |
| BstC8I | GCNNGC | 2 cut(s) | 177, 264 |
| BstDEI | CTNAG | 1 cut(s) | 231 |
| BstF5I | GGATG | 1 cut(s) | 217 |
| BstHHI | GCGC | 1 cut(s) | 16 |
| BstMAI | GTCTC | 1 cut(s) | 234 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 11 |
| BstV1I | GCAGC | 3 cut(s) | 3, 278, 281 |
| BstV2I | GAAGAC | 1 cut(s) | 191 |
| BsuRI | GGCC | 1 cut(s) | 262 |
| BtsCI | GGATG | 1 cut(s) | 217 |
| BtsIMutI | CAGTG | 1 cut(s) | 239 |
| Cac8I | GCNNGC | 2 cut(s) | 177, 264 |
| CfoI | GCGC | 1 cut(s) | 16 |
| CviJI | RGCY | 4 cut(s) | 29, 262, 290, 316 |
| CviKI_1 | RGCY | 4 cut(s) | 29, 262, 290, 316 |
| DdeI | CTNAG | 1 cut(s) | 231 |
| EaeI | YGGCCR | 1 cut(s) | 260 |
| Eam1104I | CTCTTC | 1 cut(s) | 84 |
| EarI | CTCTTC | 1 cut(s) | 84 |
| FaiI | YATR | 1 cut(s) | 307 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 176, 208 |
| FauI | CCCGC | 1 cut(s) | 184 |
| Fnu4HI | GCNGC | 4 cut(s) | 17, 267, 270, 291 |
| FokI | GGATG | 1 cut(s) | 204 |
| Fsp4HI | GCNGC | 4 cut(s) | 17, 267, 270, 291 |
| FspBI | CTAG | 1 cut(s) | 141 |
| GlaI | GCGC | 1 cut(s) | 15 |
| GluI | GCNGC | 4 cut(s) | 17, 267, 270, 291 |
| HaeIII | GGCC | 1 cut(s) | 262 |
| HhaI | GCGC | 1 cut(s) | 16 |
| Hin6I | GCGC | 1 cut(s) | 14 |
| HinP1I | GCGC | 1 cut(s) | 14 |
| HinfI | GANTC | 1 cut(s) | 203 |
| HphI | GGTGA | 1 cut(s) | 187 |
| Hpy188I | TCNGA | 1 cut(s) | 214 |
| HpyCH4IV | ACGT | 2 cut(s) | 113, 127 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 11 |
| HpyF3I | CTNAG | 1 cut(s) | 231 |
| HpySE526I | ACGT | 2 cut(s) | 113, 127 |
| HspAI | GCGC | 1 cut(s) | 14 |
| LmnI | GCTCC | 1 cut(s) | 142 |
| LpnPI | CCDG | 3 cut(s) | 43, 276, 323 |
| Lsp1109I | GCAGC | 3 cut(s) | 3, 278, 281 |
| MaeI | CTAG | 1 cut(s) | 141 |
| MaeII | ACGT | 2 cut(s) | 113, 127 |
| MboII | GAAGA | 2 cut(s) | 71, 196 |
| MluCI | AATT | 3 cut(s) | 41, 98, 280 |
| MlyI | GAGTC | 1 cut(s) | 197 |
| MnlI | CCTC | 6 cut(s) | 87, 171, 232, 248, 324, 327 |
| MseI | TTAA | 3 cut(s) | 101, 147, 297 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 11 |
| NmeAIII | GCCGAG | 1 cut(s) | 205 |
| PkrI | GCNGC | 4 cut(s) | 18, 268, 271, 292 |
| PleI | GAGTC | 1 cut(s) | 197 |
| PpsI | GAGTC | 1 cut(s) | 197 |
| Psp1406I | AACGTT | 2 cut(s) | 113, 127 |
| SaqAI | TTAA | 3 cut(s) | 101, 147, 297 |
| SatI | GCNGC | 4 cut(s) | 17, 267, 270, 291 |
| SchI | GAGTC | 1 cut(s) | 197 |
| SetI | ASST | 3 cut(s) | 116, 130, 163 |
| SgeI | CNNG | 7 cut(s) | 42, 153, 184, 188, 193, 275, 334 |
| SmlI | CTYRAG | 1 cut(s) | 320 |
| SmoI | CTYRAG | 1 cut(s) | 320 |
| Sse9I | AATT | 3 cut(s) | 41, 98, 280 |
| SsiI | CCGC | 3 cut(s) | 177, 198, 291 |
| SspMI | CTAG | 1 cut(s) | 141 |
| TaiI | ACGT | 2 cut(s) | 116, 130 |
| TaqI | TCGA | 1 cut(s) | 24 |
| TasI | AATT | 3 cut(s) | 41, 98, 280 |
| TauI | GCSGC | 1 cut(s) | 293 |
| Tru1I | TTAA | 3 cut(s) | 101, 147, 297 |
| Tru9I | TTAA | 3 cut(s) | 101, 147, 297 |
| TscAI | CASTG | 1 cut(s) | 239 |
| TseI | GCWGC | 3 cut(s) | 16, 266, 269 |
| TspRI | CASTG | 1 cut(s) | 239 |
| XspI | CTAG | 1 cut(s) | 141 |