Rh1DG179600

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0006404
Physical Location & Seq
Forward (+)
36431714 .. 36432673
960 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG179600.1

Sequence Viewer

Length: 342 bp
ATGCATTTGAGTGATATATATAAGGTTACTTCATCGAACACGGGACGAGCAGTGCAAACGGATCTTAATCGGATCGCTGAAACTGCAGATACCTCTACACATACGGGTTTGAGATATGTTTTGAGAGATACAGCAGTAGCTCTATTTCGGCAACCTGATTATTGCATTTCCAGTTACTCATGTGTGGTTATACCAAAGTTCTCTAGAGCAGCGGCTCAGCAATGCTTTGATCAACTTGTGTTCAGAGAGAGGAGATCGACTAATGAATCTCACAATGACAATGTAGAGGTTACAATATTACTTGCTGCTGTTGGGAAGTCTAAAGTTGGCCACTATCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

113

Amino Acids

12.66

Weight (kDa)

8.52

Isoelectric Point (pI)

36.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1517 PF07466 13 - 96 9.9e-17 Protein of unknown function (DUF1517)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 212
AclWI GGATC 2 cut(s) 69, 80
AcoI YGGCCR 1 cut(s) 328
AluBI AGCT 1 cut(s) 140
AluI AGCT 1 cut(s) 140
AlwI GGATC 2 cut(s) 69, 80
AoxI GGCC 1 cut(s) 328
ApeKI GCWGC 2 cut(s) 209, 305
BaeI ACNNNNGTAYC 2 cut(s) 120, 153
BalI TGGCCA 1 cut(s) 330
BbvI GCAGC 2 cut(s) 221, 292
BclI TGATCA 1 cut(s) 229
BfaI CTAG 1 cut(s) 204
BfmI CTRYAG 1 cut(s) 84
BisI GCNGC 3 cut(s) 210, 213, 306
BlpI GCTNAGC 1 cut(s) 216
BlsI GCNGC 3 cut(s) 211, 214, 307
Bpu1102I GCTNAGC 1 cut(s) 216
BsaBI GATNNNNATC 1 cut(s) 66
Bse1I ACTGG 1 cut(s) 171
Bse3DI GCAATG 1 cut(s) 227
Bse8I GATNNNNATC 1 cut(s) 66
BseJI GATNNNNATC 1 cut(s) 66
BseMI GCAATG 1 cut(s) 227
BseMII CTCAG 1 cut(s) 230
BseNI ACTGG 1 cut(s) 171
BseRI GAGGAG 1 cut(s) 265
BseXI GCAGC 2 cut(s) 221, 292
BshFI GGCC 1 cut(s) 330
BslFI GGGAC 1 cut(s) 57
BsmFI GGGAC 1 cut(s) 57
BsnI GGCC 1 cut(s) 330
Bsp143I GATC 4 cut(s) 61, 72, 229, 254
Bsp1720I GCTNAGC 1 cut(s) 216
BspACI CCGC 1 cut(s) 212
BspANI GGCC 1 cut(s) 330
BspCNI CTCAG 1 cut(s) 229
BspMAI CTGCAG 1 cut(s) 88
BspPI GGATC 2 cut(s) 69, 80
BsrDI GCAATG 1 cut(s) 227
BsrI ACTGG 1 cut(s) 171
BssMI GATC 4 cut(s) 61, 72, 229, 254
BstDEI CTNAG 1 cut(s) 216
BstKTI GATC 4 cut(s) 64, 75, 232, 257
BstMBI GATC 4 cut(s) 61, 72, 229, 254
BstMWI GCNNNNNNNGC 1 cut(s) 83
BstSFI CTRYAG 1 cut(s) 84
BstV1I GCAGC 2 cut(s) 221, 292
BstX2I RGATCY 1 cut(s) 61
BstYI RGATCY 1 cut(s) 61
BsuRI GGCC 1 cut(s) 330
BtsI GCAGTG 1 cut(s) 57
BtsIMutI CAGTG 1 cut(s) 57
CspCI CAANNNNNGTGG 1 cut(s) 320
CviAII CATG 1 cut(s) 180
CviJI RGCY 3 cut(s) 140, 215, 330
CviKI_1 RGCY 3 cut(s) 140, 215, 330
DdeI CTNAG 1 cut(s) 216
DpnI GATC 4 cut(s) 63, 74, 231, 256
DpnII GATC 4 cut(s) 61, 72, 229, 254
EaeI YGGCCR 1 cut(s) 328
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 1 cut(s) 183
FaiI YATR 7 cut(s) 17, 19, 21, 102, 117, 181, 191
FaqI GGGAC 1 cut(s) 57
FatI CATG 1 cut(s) 179
FbaI TGATCA 1 cut(s) 229
Fnu4HI GCNGC 3 cut(s) 210, 213, 306
Fsp4HI GCNGC 3 cut(s) 210, 213, 306
FspBI CTAG 1 cut(s) 204
GluI GCNGC 3 cut(s) 210, 213, 306
HaeIII GGCC 1 cut(s) 330
Hin1II CATG 1 cut(s) 183
HinfI GANTC 1 cut(s) 266
Hpy188I TCNGA 2 cut(s) 72, 245
Hpy188III TCNNGA 1 cut(s) 204
HpyCH4V TGCA 4 cut(s) 4, 55, 86, 165
HpyF10VI GCNNNNNNNGC 1 cut(s) 83
HpyF3I CTNAG 1 cut(s) 216
Hsp92II CATG 1 cut(s) 183
Ksp22I TGATCA 1 cut(s) 229
Kzo9I GATC 4 cut(s) 61, 72, 229, 254
LpnPI CCDG 2 cut(s) 168, 184
Lsp1109I GCAGC 2 cut(s) 221, 292
MaeI CTAG 1 cut(s) 204
MaeIII GTNAC 3 cut(s) 25, 173, 289
MalI GATC 4 cut(s) 63, 74, 231, 256
MboI GATC 4 cut(s) 61, 72, 229, 254
MflI RGATCY 1 cut(s) 61
MlsI TGGCCA 1 cut(s) 330
MluNI TGGCCA 1 cut(s) 330
MnlI CCTC 3 cut(s) 103, 243, 280
Mox20I TGGCCA 1 cut(s) 330
Mph1103I ATGCAT 1 cut(s) 6
MscI TGGCCA 1 cut(s) 330
MseI TTAA 1 cut(s) 66
MslI CAYNNNNRTG 1 cut(s) 9
Msp20I TGGCCA 1 cut(s) 330
MspA1I CMGCKG 1 cut(s) 212
MwoI GCNNNNNNNGC 1 cut(s) 83
NdeII GATC 4 cut(s) 61, 72, 229, 254
NlaIII CATG 1 cut(s) 183
NsiI ATGCAT 1 cut(s) 6
PfeI GAWTC 1 cut(s) 266
PkrI GCNGC 3 cut(s) 211, 214, 307
PstI CTGCAG 1 cut(s) 88
PsuI RGATCY 1 cut(s) 61
RseI CAYNNNNRTG 1 cut(s) 9
SaqAI TTAA 1 cut(s) 66
SatI GCNGC 3 cut(s) 210, 213, 306
Sau3AI GATC 4 cut(s) 61, 72, 229, 254
SetI ASST 5 cut(s) 27, 95, 142, 157, 291
SfcI CTRYAG 1 cut(s) 84
SmiMI CAYNNNNRTG 1 cut(s) 9
SsiI CCGC 1 cut(s) 212
SspI AATATT 1 cut(s) 297
SspMI CTAG 1 cut(s) 204
TaqI TCGA 2 cut(s) 35, 257
TauI GCSGC 1 cut(s) 215
TfiI GAWTC 1 cut(s) 266
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
TscAI CASTG 1 cut(s) 57
TseI GCWGC 2 cut(s) 209, 305
TspDTI ATGAA 2 cut(s) 21, 279
TspGWI ACGGA 1 cut(s) 74
TspRI CASTG 1 cut(s) 57
XbaI TCTAGA 1 cut(s) 203
XspI CTAG 1 cut(s) 204
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.