Rh2CG627600

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0006404
Physical Location & Seq
Reverse (-)
80128579 .. 80144802
16224 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG627600.1

Sequence Viewer

Length: 690 bp
ATGGCTGCCTTGCTGTTGGGTTTGTTAGTCATGTACAACCCCAACTCATCCGCGTTGGCTGCTCCGGTGGGTCGGGTCGGTGGAAGTTTGACACCCACGTGCACGACGTCGCACCATCCATCTAAATATTCTTCGACCACAATGAAAACGTCCGACCACTACGATGATCCGATCTGGGAGTTTGCAGTCTCATGGTTCACTCTTTTCTGCTGTTACGCGGGATTTTTTGCGTGGGTTTTGCCTATCTCTAAGTTTTGCAAGGCTGCCTTGTTTATTTTCGGGACAGTTTTATTCGCTATTTGGGTTCACTTTCTAGGTCAAACAAGTGTTGTCAAGCTCCAGCTTCAGGTGGTTATACCAAAGTTCTCTAGAGCAGCGGCTCAGCAATGCTTTGATCAACTTGTGTTCAGAGAGAGGGTTAGATATGATGAAGAGACCATTGTCAATGTGGACAATATAAAAACTCAAAGCACACCAAGTCAGAGATCGACTAATGAATCTCACAATGACAATGTGGAGGTTACAATTTTACTTGCTGTTGAAGGAAAGTCTAAGTTGCCCACTATCATTGACAGCAGTGACTTGAAGAAAGTGATGGAAGAGCTTGCATCCATTGATCCCAGCAGACTAATATTTGGATTAGAGGTACGGTGGACTCCTCAGTTCTCTTCAAATGCGGCAAGCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

229

Amino Acids

25.49

Weight (kDa)

6.95

Isoelectric Point (pI)

40.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1517 PF07466 122 - 224 1.3e-21 Protein of unknown function (DUF1517)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 110
AccII CGCG 2 cut(s) 53, 218
AciI CCGC 4 cut(s) 51, 218, 377, 677
AclWI GGATC 2 cut(s) 161, 611
AcuI CTGAAG 1 cut(s) 329
AcvI CACGTG 1 cut(s) 99
AcyI GRCGYC 1 cut(s) 107
AfaI GTAC 2 cut(s) 35, 648
AfiI CCNNNNNNNGG 1 cut(s) 346
AgsI TTSAA 3 cut(s) 542, 586, 672
AleI CACNNNNGTG 1 cut(s) 97
AluBI AGCT 3 cut(s) 337, 343, 604
AluI AGCT 3 cut(s) 337, 343, 604
Alw21I GWGCWC 1 cut(s) 104
Alw26I GTCTC 2 cut(s) 193, 428
Alw44I GTGCAC 1 cut(s) 100
AlwI GGATC 2 cut(s) 161, 611
ApaLI GTGCAC 1 cut(s) 100
ApeKI GCWGC 4 cut(s) 5, 59, 263, 374
BaeGI GKGCMC 1 cut(s) 104
BbrPI CACGTG 1 cut(s) 99
Bbv12I GWGCWC 1 cut(s) 104
BbvI GCAGC 3 cut(s) 46, 250, 386
BccI CCATC 3 cut(s) 123, 127, 589
BclI TGATCA 1 cut(s) 394
BcoDI GTCTC 2 cut(s) 193, 428
BfaI CTAG 2 cut(s) 314, 369
BisI GCNGC 6 cut(s) 6, 60, 264, 375, 378, 678
BlpI GCTNAGC 1 cut(s) 381
BlsI GCNGC 6 cut(s) 7, 61, 265, 376, 379, 679
BmsI GCATC 1 cut(s) 617
BoxI GACNNNNGTC 1 cut(s) 440
BpmI CTGGAG 1 cut(s) 323
Bpu1102I GCTNAGC 1 cut(s) 381
BsaAI YACGTR 1 cut(s) 99
BsaHI GRCGYC 1 cut(s) 107
BsaI GGTCTC 1 cut(s) 428
BsaWI WCCGGW 1 cut(s) 64
Bsc4I CCNNNNNNNGG 1 cut(s) 346
Bse3DI GCAATG 1 cut(s) 392
BseGI GGATG 3 cut(s) 47, 115, 608
BseLI CCNNNNNNNGG 1 cut(s) 346
BseMI GCAATG 1 cut(s) 392
BseMII CTCAG 2 cut(s) 395, 674
BseRI GAGGAG 1 cut(s) 648
BseSI GKGCMC 1 cut(s) 104
BseXI GCAGC 3 cut(s) 46, 250, 386
BseYI CCCAGC 1 cut(s) 620
Bsh1236I CGCG 2 cut(s) 53, 218
BsiHKAI GWGCWC 1 cut(s) 104
BsiSI CCGG 1 cut(s) 65
BslFI GGGAC 1 cut(s) 295
BslI CCNNNNNNNGG 1 cut(s) 346
BsmAI GTCTC 2 cut(s) 193, 428
BsmFI GGGAC 1 cut(s) 295
Bso31I GGTCTC 1 cut(s) 428
Bsp1286I GDGCHC 1 cut(s) 104
Bsp1407I TGTACA 1 cut(s) 33
Bsp143I GATC 5 cut(s) 166, 171, 394, 485, 616
Bsp1720I GCTNAGC 1 cut(s) 381
BspACI CCGC 4 cut(s) 51, 218, 377, 677
BspCNI CTCAG 2 cut(s) 394, 673
BspFNI CGCG 2 cut(s) 53, 218
BspPI GGATC 2 cut(s) 161, 611
BspQI GCTCTTC 1 cut(s) 594
BspTNI GGTCTC 1 cut(s) 428
BsrDI GCAATG 1 cut(s) 392
BsrGI TGTACA 1 cut(s) 33
BssMI GATC 5 cut(s) 166, 171, 394, 485, 616
BssNI GRCGYC 1 cut(s) 107
Bst4CI ACNGT 2 cut(s) 286, 651
Bst6I CTCTTC 3 cut(s) 426, 594, 673
BstACI GRCGYC 1 cut(s) 107
BstAUI TGTACA 1 cut(s) 33
BstBAI YACGTR 1 cut(s) 99
BstC8I GCNNGC 2 cut(s) 606, 682
BstDEI CTNAG 4 cut(s) 249, 381, 552, 660
BstF5I GGATG 3 cut(s) 47, 115, 608
BstFNI CGCG 2 cut(s) 53, 218
BstKTI GATC 5 cut(s) 169, 174, 397, 488, 619
BstMAI GTCTC 2 cut(s) 193, 428
BstMBI GATC 5 cut(s) 166, 171, 394, 485, 616
BstMWI GCNNNNNNNGC 1 cut(s) 59
BstPAI GACNNNNGTC 1 cut(s) 440
BstSLI GKGCMC 1 cut(s) 104
BstUI CGCG 2 cut(s) 53, 218
BstV1I GCAGC 3 cut(s) 46, 250, 386
BtsCI GGATG 3 cut(s) 47, 115, 608
BtsI GCAGTG 1 cut(s) 583
BtsIMutI CAGTG 1 cut(s) 583
Cac8I GCNNGC 2 cut(s) 606, 682
Csp6I GTAC 2 cut(s) 34, 647
CspCI CAANNNNNGTGG 2 cut(s) 550, 585
CviAII CATG 2 cut(s) 31, 192
CviJI RGCY 7 cut(s) 5, 59, 263, 337, 343, 380, 604
CviKI_1 RGCY 7 cut(s) 5, 59, 263, 337, 343, 380, 604
CviQI GTAC 2 cut(s) 34, 647
DdeI CTNAG 4 cut(s) 249, 381, 552, 660
DpnI GATC 5 cut(s) 168, 173, 396, 487, 618
DpnII GATC 5 cut(s) 166, 171, 394, 485, 616
Eam1104I CTCTTC 3 cut(s) 426, 594, 673
EarI CTCTTC 3 cut(s) 426, 594, 673
Eco31I GGTCTC 1 cut(s) 428
Eco57I CTGAAG 1 cut(s) 329
Eco72I CACGTG 1 cut(s) 99
FaeI CATG 2 cut(s) 34, 195
FaiI YATR 5 cut(s) 32, 193, 356, 426, 458
FalI AAGNNNNNCTT 2 cut(s) 251, 283
FaqI GGGAC 1 cut(s) 295
FatI CATG 2 cut(s) 30, 191
FauI CCCGC 1 cut(s) 211
FbaI TGATCA 1 cut(s) 394
Fnu4HI GCNGC 6 cut(s) 6, 60, 264, 375, 378, 678
FokI GGATG 3 cut(s) 34, 102, 595
Fsp4HI GCNGC 6 cut(s) 6, 60, 264, 375, 378, 678
FspBI CTAG 2 cut(s) 314, 369
GluI GCNGC 6 cut(s) 6, 60, 264, 375, 378, 678
GsaI CCCAGC 1 cut(s) 624
GsuI CTGGAG 1 cut(s) 323
HapII CCGG 1 cut(s) 65
Hin1I GRCGYC 1 cut(s) 107
Hin1II CATG 2 cut(s) 34, 195
HinfI GANTC 2 cut(s) 497, 655
HpaII CCGG 1 cut(s) 65
Hpy166II GTNNAC 5 cut(s) 102, 198, 307, 451, 654
Hpy188I TCNGA 4 cut(s) 154, 171, 410, 483
Hpy188III TCNNGA 2 cut(s) 280, 369
Hpy8I GTNNAC 5 cut(s) 102, 198, 307, 451, 654
Hpy99I CGWCG 2 cut(s) 109, 112
HpyAV CCTTC 1 cut(s) 536
HpyCH4III ACNGT 2 cut(s) 286, 651
HpyCH4IV ACGT 3 cut(s) 98, 107, 149
HpyCH4V TGCA 4 cut(s) 102, 185, 258, 608
HpyF10VI GCNNNNNNNGC 1 cut(s) 59
HpyF3I CTNAG 4 cut(s) 249, 381, 552, 660
HpySE526I ACGT 3 cut(s) 98, 107, 149
Hsp92I GRCGYC 1 cut(s) 107
Hsp92II CATG 2 cut(s) 34, 195
Ksp22I TGATCA 1 cut(s) 394
Kzo9I GATC 5 cut(s) 166, 171, 394, 485, 616
LguI GCTCTTC 1 cut(s) 594
LmnI GCTCC 2 cut(s) 67, 342
LpnPI CCDG 5 cut(s) 78, 160, 332, 353, 634
Lsp1109I GCAGC 3 cut(s) 46, 250, 386
LweI GCATC 1 cut(s) 617
MaeI CTAG 2 cut(s) 314, 369
MaeII ACGT 3 cut(s) 98, 107, 149
MaeIII GTNAC 3 cut(s) 212, 520, 578
MalI GATC 5 cut(s) 168, 173, 396, 487, 618
MboI GATC 5 cut(s) 166, 171, 394, 485, 616
MboII GAAGA 5 cut(s) 123, 443, 598, 611, 660
MhlI GDGCHC 1 cut(s) 104
MluCI AATT 1 cut(s) 525
MlyI GAGTC 1 cut(s) 649
MmeI TCCRAC 1 cut(s) 177
MnlI CCTC 4 cut(s) 408, 511, 637, 669
MslI CAYNNNNRTG 2 cut(s) 97, 162
MspA1I CMGCKG 1 cut(s) 377
MspI CCGG 1 cut(s) 65
MvnI CGCG 2 cut(s) 53, 218
MwoI GCNNNNNNNGC 1 cut(s) 59
NdeII GATC 5 cut(s) 166, 171, 394, 485, 616
NlaIII CATG 2 cut(s) 34, 195
NmuCI GTSAC 1 cut(s) 578
OliI CACNNNNGTG 1 cut(s) 97
PciSI GCTCTTC 1 cut(s) 594
PcsI WCGNNNNNNNCGW 1 cut(s) 104
PfeI GAWTC 1 cut(s) 497
PkrI GCNGC 6 cut(s) 7, 61, 265, 376, 379, 679
PleI GAGTC 1 cut(s) 649
PmaCI CACGTG 1 cut(s) 99
PmlI CACGTG 1 cut(s) 99
PpsI GAGTC 1 cut(s) 649
Ppu21I YACGTR 1 cut(s) 99
PshAI GACNNNNGTC 1 cut(s) 440
PspCI CACGTG 1 cut(s) 99
PspFI CCCAGC 1 cut(s) 620
RsaI GTAC 2 cut(s) 35, 648
RsaNI GTAC 2 cut(s) 34, 647
RseI CAYNNNNRTG 2 cut(s) 97, 162
SapI GCTCTTC 1 cut(s) 594
SatI GCNGC 6 cut(s) 6, 60, 264, 375, 378, 678
Sau3AI GATC 5 cut(s) 166, 171, 394, 485, 616
SchI GAGTC 1 cut(s) 649
SduI GDGCHC 1 cut(s) 104
SfaNI GCATC 1 cut(s) 617
SmiMI CAYNNNNRTG 2 cut(s) 97, 162
Sse9I AATT 1 cut(s) 525
SsiI CCGC 4 cut(s) 51, 218, 377, 677
SspI AATATT 2 cut(s) 128, 633
SspMI CTAG 2 cut(s) 314, 369
TaaI ACNGT 2 cut(s) 286, 651
TaiI ACGT 3 cut(s) 101, 110, 152
TaqI TCGA 2 cut(s) 134, 488
TasI AATT 1 cut(s) 525
TatI WGTACW 1 cut(s) 33
TauI GCSGC 2 cut(s) 380, 680
TfiI GAWTC 1 cut(s) 497
TscAI CASTG 1 cut(s) 583
TseFI GTSAC 1 cut(s) 578
TseI GCWGC 4 cut(s) 5, 59, 263, 374
Tsp45I GTSAC 1 cut(s) 578
TspDTI ATGAA 3 cut(s) 158, 444, 510
TspRI CASTG 1 cut(s) 583
VneI GTGCAC 1 cut(s) 100
XbaI TCTAGA 1 cut(s) 368
XcmI CCANNNNNNNNNTGG 1 cut(s) 445
XspI CTAG 2 cut(s) 314, 369
ZraI GACGTC 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.