Rw2G053580

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0006404
Physical Location & Seq
Reverse (-)
81327594 .. 81330764
3171 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G053580.1

Sequence Viewer

Length: 546 bp
ATGATCCGATCTGGGAGTTTGCAGTCTTATGGTTCACTATTTTCTGCTGTTACGCTGGATTTTTTTCTTGGGTACGTTTCGCCTTTCTCTAAGTTTTACAAGGCTGCCTTGTTTATTTTCGGGACAGTTTTCATCGCTATTTGGGTTTGGGTTCACTTTCTAGGTCAAACAAGTGTTGTCAAGCTCCAGCTTCAGATATATGAGAATGTGGTTATACCAAAGTTCTCTAGAGCAGCGGCACAGCAATGCTTTGATCAACTTGTGTTCAGAGAGAGGGTTAGATATGATGAAGAGACCATTGTCAATGTGGACAATATAAAAACTCATAGCACAACAAGTCAGAGATCAACTAATGAATCTCACAATGACAATGTAGAGTCTAAGTTGCCCACTATCATTGACAGCAGTGACTTGAAGAAAGTGATGGAAGAGCTTGCATCCATTGATCCCAGCAGACGAGTATTAGGAGTAGAGCTGACAAGCAGTATCCATGGTATGTTGCTTCTTCTCAGGTCTGTGTCACCTGTTCTATTGAGTCTTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

181

Amino Acids

20.46

Weight (kDa)

6.97

Isoelectric Point (pI)

49.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1517 PF07466 73 - 159 5e-08 Protein of unknown function (DUF1517)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 236
AclWI GGATC 1 cut(s) 440
AcuI CTGAAG 1 cut(s) 176
AfaI GTAC 1 cut(s) 74
AgsI TTSAA 1 cut(s) 415
AluBI AGCT 4 cut(s) 184, 190, 433, 475
AluI AGCT 4 cut(s) 184, 190, 433, 475
Alw26I GTCTC 1 cut(s) 287
AlwI GGATC 1 cut(s) 440
ApeKI GCWGC 2 cut(s) 104, 233
AsuHPI GGTGA 1 cut(s) 513
BbsI GAAGAC 1 cut(s) 530
BbvI GCAGC 2 cut(s) 91, 245
BccI CCATC 1 cut(s) 418
BciVI GTATCC 1 cut(s) 497
BclI TGATCA 1 cut(s) 253
BcoDI GTCTC 1 cut(s) 287
BfaI CTAG 2 cut(s) 161, 228
BfuI GTATCC 1 cut(s) 497
BisI GCNGC 3 cut(s) 105, 234, 237
BlsI GCNGC 3 cut(s) 106, 235, 238
BmsI GCATC 1 cut(s) 446
BoxI GACNNNNGTC 1 cut(s) 299
BpiI GAAGAC 1 cut(s) 530
BpmI CTGGAG 1 cut(s) 170
BsaI GGTCTC 1 cut(s) 287
BsaJI CCNNGG 1 cut(s) 490
Bse3DI GCAATG 1 cut(s) 251
BseDI CCNNGG 1 cut(s) 490
BseGI GGATG 1 cut(s) 437
BseMI GCAATG 1 cut(s) 251
BseMII CTCAG 1 cut(s) 523
BseXI GCAGC 2 cut(s) 91, 245
BseYI CCCAGC 1 cut(s) 449
BslFI GGGAC 1 cut(s) 136
BsmAI GTCTC 1 cut(s) 287
BsmFI GGGAC 1 cut(s) 136
Bso31I GGTCTC 1 cut(s) 287
Bsp143I GATC 5 cut(s) 3, 8, 253, 344, 445
Bsp19I CCATGG 1 cut(s) 490
BspACI CCGC 1 cut(s) 236
BspCNI CTCAG 1 cut(s) 522
BspPI GGATC 1 cut(s) 440
BspQI GCTCTTC 1 cut(s) 423
BspTNI GGTCTC 1 cut(s) 287
BsrDI GCAATG 1 cut(s) 251
BssECI CCNNGG 1 cut(s) 490
BssMI GATC 5 cut(s) 3, 8, 253, 344, 445
BssT1I CCWWGG 1 cut(s) 490
Bst4CI ACNGT 1 cut(s) 127
Bst6I CTCTTC 2 cut(s) 285, 423
BstC8I GCNNGC 1 cut(s) 435
BstDEI CTNAG 3 cut(s) 90, 381, 509
BstDSI CCRYGG 1 cut(s) 490
BstF5I GGATG 1 cut(s) 437
BstKTI GATC 5 cut(s) 6, 11, 256, 347, 448
BstMAI GTCTC 1 cut(s) 287
BstMBI GATC 5 cut(s) 3, 8, 253, 344, 445
BstPAI GACNNNNGTC 1 cut(s) 299
BstV1I GCAGC 2 cut(s) 91, 245
BstV2I GAAGAC 1 cut(s) 530
BsuI GTATCC 1 cut(s) 497
BtgI CCRYGG 1 cut(s) 490
BtgZI GCGATG 1 cut(s) 118
BtsCI GGATG 1 cut(s) 437
BtsI GCAGTG 1 cut(s) 412
BtsIMutI CAGTG 2 cut(s) 412, 541
Cac8I GCNNGC 1 cut(s) 435
Csp6I GTAC 1 cut(s) 73
CspCI CAANNNNNGTGG 2 cut(s) 379, 414
CviAII CATG 1 cut(s) 491
CviJI RGCY 5 cut(s) 104, 184, 190, 433, 475
CviKI_1 RGCY 5 cut(s) 104, 184, 190, 433, 475
CviQI GTAC 1 cut(s) 73
DdeI CTNAG 3 cut(s) 90, 381, 509
DpnI GATC 5 cut(s) 5, 10, 255, 346, 447
DpnII GATC 5 cut(s) 3, 8, 253, 344, 445
Eam1104I CTCTTC 2 cut(s) 285, 423
EarI CTCTTC 2 cut(s) 285, 423
Eco130I CCWWGG 1 cut(s) 490
Eco31I GGTCTC 1 cut(s) 287
Eco57I CTGAAG 1 cut(s) 176
EcoT14I CCWWGG 1 cut(s) 490
ErhI CCWWGG 1 cut(s) 490
FaeI CATG 1 cut(s) 494
FaiI YATR 9 cut(s) 30, 199, 201, 215, 285, 317, 327, 492, 497
FalI AAGNNNNNCTT 2 cut(s) 92, 124
FaqI GGGAC 1 cut(s) 136
FatI CATG 1 cut(s) 490
FbaI TGATCA 1 cut(s) 253
Fnu4HI GCNGC 3 cut(s) 105, 234, 237
FokI GGATG 1 cut(s) 424
Fsp4HI GCNGC 3 cut(s) 105, 234, 237
FspBI CTAG 2 cut(s) 161, 228
GluI GCNGC 3 cut(s) 105, 234, 237
GsaI CCCAGC 1 cut(s) 453
GsuI CTGGAG 1 cut(s) 170
Hin1II CATG 1 cut(s) 494
HinfI GANTC 3 cut(s) 356, 377, 535
HphI GGTGA 1 cut(s) 513
Hpy166II GTNNAC 3 cut(s) 35, 154, 310
Hpy188I TCNGA 4 cut(s) 8, 195, 269, 342
Hpy188III TCNNGA 2 cut(s) 121, 228
Hpy8I GTNNAC 3 cut(s) 35, 154, 310
HpyCH4III ACNGT 1 cut(s) 127
HpyCH4IV ACGT 1 cut(s) 75
HpyCH4V TGCA 2 cut(s) 22, 437
HpyF3I CTNAG 3 cut(s) 90, 381, 509
HpySE526I ACGT 1 cut(s) 75
Hsp92II CATG 1 cut(s) 494
Ksp22I TGATCA 1 cut(s) 253
Kzo9I GATC 5 cut(s) 3, 8, 253, 344, 445
LguI GCTCTTC 1 cut(s) 423
LmnI GCTCC 1 cut(s) 189
LpnPI CCDG 5 cut(s) 41, 200, 463, 496, 537
Lsp1109I GCAGC 2 cut(s) 91, 245
LweI GCATC 1 cut(s) 446
MaeI CTAG 2 cut(s) 161, 228
MaeII ACGT 1 cut(s) 75
MaeIII GTNAC 3 cut(s) 49, 407, 519
MalI GATC 5 cut(s) 5, 10, 255, 346, 447
MboI GATC 5 cut(s) 3, 8, 253, 344, 445
MboII GAAGA 5 cut(s) 302, 427, 440, 497, 530
MlyI GAGTC 2 cut(s) 386, 544
MnlI CCTC 1 cut(s) 267
MslI CAYNNNNRTG 1 cut(s) 244
MspA1I CMGCKG 1 cut(s) 236
NcoI CCATGG 1 cut(s) 490
NdeII GATC 5 cut(s) 3, 8, 253, 344, 445
NlaIII CATG 1 cut(s) 494
NmuCI GTSAC 2 cut(s) 407, 519
PciSI GCTCTTC 1 cut(s) 423
PfeI GAWTC 1 cut(s) 356
PkrI GCNGC 3 cut(s) 106, 235, 238
PleI GAGTC 2 cut(s) 385, 543
PpsI GAGTC 2 cut(s) 385, 543
PshAI GACNNNNGTC 1 cut(s) 299
PspFI CCCAGC 1 cut(s) 449
RsaI GTAC 1 cut(s) 74
RsaNI GTAC 1 cut(s) 73
RseI CAYNNNNRTG 1 cut(s) 244
SapI GCTCTTC 1 cut(s) 423
SatI GCNGC 3 cut(s) 105, 234, 237
Sau3AI GATC 5 cut(s) 3, 8, 253, 344, 445
SchI GAGTC 2 cut(s) 386, 544
SetI ASST 8 cut(s) 78, 166, 186, 192, 435, 477, 515, 526
SfaNI GCATC 1 cut(s) 446
SmiMI CAYNNNNRTG 1 cut(s) 244
SsiI CCGC 1 cut(s) 236
SspMI CTAG 2 cut(s) 161, 228
StyI CCWWGG 1 cut(s) 490
TaaI ACNGT 1 cut(s) 127
TaiI ACGT 1 cut(s) 78
TauI GCSGC 1 cut(s) 239
TfiI GAWTC 1 cut(s) 356
TscAI CASTG 1 cut(s) 412
TseFI GTSAC 2 cut(s) 407, 519
TseI GCWGC 2 cut(s) 104, 233
Tsp45I GTSAC 2 cut(s) 407, 519
TspDTI ATGAA 3 cut(s) 121, 303, 369
TspRI CASTG 1 cut(s) 412
XbaI TCTAGA 1 cut(s) 227
XcmI CCANNNNNNNNNTGG 1 cut(s) 304
XspI CTAG 2 cut(s) 161, 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.