Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006404

Physical Location & Seq

Genomic Coordinates Forward (+)

86898540 .. 86900374

Gene Structure 1835 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54140

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGGCAACAGCTGCGCTGCTCATTGAAGCCAACCCATTAATGAAATTGAAGCAAAACACCCTATTACGCACTTTTCGTCCTCTTCCATCAAAACCAATCGCATTAACGTTTAGCAATCAACGTTGCTTTGCTCCTAGAATATTTAAGAACCCTAAACCTCGATGTTTCTTGCCCGCCGACTCTAAATGTCATCCCTCTCATTCTCAGTCCCTCAATGTTCTTAAAGATAATCGGCCAGCGGCAGCAAACCCTAATTTCACAGTCGCCGTTAATAAGGTATGGGAAAAGTGTCACAGGGCATTGAGGGAACCAGCAATGGCTGCCGTGCTGTTTGGTTTGTTAGTCATGTGCAACCCCAACTCAGCAGCGTTGGCTGCTCCGGTGGGTCGGGTCGGTGGAAGCTTGACACTCACGCGTACGACGTTGCACCATCCATCTAAATATTCTTCGACCACAATCACAACGTCCGACCACTACGATGATCCGATCTGGGAAATTGCATTCTATTTTTTCTTTGATTTATACTGTCTCTGGGGATTGTTTGCGTTGCTTTCGCCTTACCCCAAGTTTTACACGGCTGCTTTGTTTATTTTCGGGACAGTTTTCACCGCTATTTGGGTTCACTCTCTAGGTCAAACAAGTGTTGTCAAGCTCCAGCTTCAGGTTACTTTATCGAACACGGGACGAGCAGTGCAAACGGATCTTAATCGGATCGCTGAAACTGCAGATACCTCTACACGTACGGGTTTGAGGTATGTTTTGAGAGGTGAGTTAAATGAAAAAGGCCTTATTTTTGGTGATAACAATATTTTCCTTTTAGGTCATCTGATTTCATTTTCACCAAATCTTTTGGTTATAGATACAGCGGTAGCTCTATTTCGGCAACCTGATTATTGCATTTCCGGTTACTCATGTGTGGGTGTATCAAAGTTCACTAGAGCGGCTGCACAGCAATGCTTTGATAAAATTGTGTTCAGAGAGAGGGTTAGATATGACGAAGAGACCATTGTCAATGTGGACAATATAAAAACTCAAAGCACAACAAGTCAGAGATCAACTAATGAATCTCACAATGACAATGTAGAGGTTACAATTTTACTTGCTGTTGATGGAAAGTCTAAGCTGCCCACTATCATTGACAGCAGTGATTTGAAGAAAGTGATGGAAGAGCTTGCATCCATTGATCCCAACAGACTACTTTTAGTAAGAATAAAAATTTCTACTAGTAGCTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1517

Protein Analysis

411

Amino Acids

45.79

Weight (kDa)

9.21

Isoelectric Point (pI)

35.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1517	PF07466	218 - 255	3.1e-07	Protein of unknown function (DUF1517)
DUF1517	PF07466	284 - 403	3.8e-22	Protein of unknown function (DUF1517)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006404)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g07650 FvH4_4g23690
rosa_chinensis	RchiOBHm_Chr2g0174231
rosa_laevigata	RLG00000022227
rosa_multiflora	Rmu_sc0000954.1_g000010 Rmu_sc0003188.1_g000015 Rmu_sc0007150.1_g000008
rosa_roxburghii	Rroxscaffold_160G00433820 Rroxscaffold_2G00078310 Rroxscaffold_2G00078580 Rroxscaffold_4G00327970 Rroxscaffold_5G00372130
rosa_rugosa	Rorug02G0573200 Rorug02G0573600
rosa_samantha	Rh1DG179600 Rh2AG652200 Rh2AG652400 Rh2AG656000 Rh2BG663000 Rh2BG663200 Rh2BG667200 Rh2CG627600 Rh2CG628100 Rh2DG678100 Rh2DG678500 Rh4CG321100
rosa_wichuraiana	Rw2G053580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	941
AccII	CGCG	1 cut(s)	415
AciI	CCGC	5 cut(s)	174, 239, 609, 866, 941
AclI	AACGTT	2 cut(s)	107, 121
AclWI	GGATC	4 cut(s)	476, 708, 719, 1178
AcoI	YGGCCR	1 cut(s)	233
AcsI	RAATTY	1 cut(s)	1215
AcuI	CTGAAG	1 cut(s)	644
AfaI	GTAC	2 cut(s)	418, 742
AfiI	CCNNNNNNNGG	2 cut(s)	615, 661
AflIII	ACRYGT	2 cut(s)	413, 737
AgsI	TTSAA	3 cut(s)	26, 49, 1153
AhlI	ACTAGT	1 cut(s)	1223
AluBI	AGCT	8 cut(s)	11, 402, 652, 658, 872, 1123, 1171, 1230
AluI	AGCT	8 cut(s)	11, 402, 652, 658, 872, 1123, 1171, 1230
Alw26I	GTCTC	2 cut(s)	533, 995
AlwI	GGATC	4 cut(s)	476, 708, 719, 1178
AoxI	GGCC	2 cut(s)	233, 784
ApeKI	GCWGC	9 cut(s)	11, 16, 242, 320, 365, 374, 578, 944, 1123
ApoI	RAATTY	1 cut(s)	1215
AseI	ATTAAT	1 cut(s)	38
AspLEI	GCGC	1 cut(s)	16
AsuHPI	GGTGA	4 cut(s)	598, 779, 809, 831
BaeI	ACNNNNGTAYC	2 cut(s)	852, 885
BbvI	GCAGC	8 cut(s)	3, 254, 307, 361, 377, 565, 931, 1110
BccI	CCATC	5 cut(s)	94, 438, 442, 1103, 1156
BceAI	ACGGC	3 cut(s)	251, 308, 591
BcoDI	GTCTC	2 cut(s)	533, 995
BcuI	ACTAGT	1 cut(s)	1223
BfaI	CTAG	4 cut(s)	135, 629, 936, 1224
BfmI	CTRYAG	1 cut(s)	723
BmiI	GGNNCC	1 cut(s)	309
BmsI	GCATC	1 cut(s)	1184
BoxI	GACNNNNGTC	1 cut(s)	1007
BpmI	CTGGAG	1 cut(s)	638
BsaAI	YACGTR	1 cut(s)	740
BsaBI	GATNNNNATC	1 cut(s)	705
BsaI	GGTCTC	1 cut(s)	995
BsaWI	WCCGGW	2 cut(s)	379, 902
Bsc4I	CCNNNNNNNGG	2 cut(s)	615, 661
Bse3DI	GCAATG	2 cut(s)	321, 959
Bse8I	GATNNNNATC	1 cut(s)	705
BseGI	GGATG	3 cut(s)	190, 430, 1175
BseJI	GATNNNNATC	1 cut(s)	705
BseLI	CCNNNNNNNGG	2 cut(s)	615, 661
BseMI	GCAATG	2 cut(s)	321, 959
BseMII	CTCAG	2 cut(s)	218, 375
BseXI	GCAGC	8 cut(s)	3, 254, 307, 361, 377, 565, 931, 1110
BsgI	GTGCAG	1 cut(s)	930
Bsh1236I	CGCG	1 cut(s)	415
BshFI	GGCC	2 cut(s)	235, 786
BsiSI	CCGG	2 cut(s)	380, 903
BsiWI	CGTACG	2 cut(s)	416, 740
BslFI	GGGAC	3 cut(s)	193, 610, 696
BslI	CCNNNNNNNGG	2 cut(s)	615, 661
BsmAI	GTCTC	2 cut(s)	533, 995
BsmFI	GGGAC	3 cut(s)	193, 610, 696
BsmI	GAATGC	1 cut(s)	500
BsnI	GGCC	2 cut(s)	235, 786
Bso31I	GGTCTC	1 cut(s)	995
Bsp143I	GATC	6 cut(s)	481, 486, 700, 711, 1052, 1183
BspACI	CCGC	5 cut(s)	174, 239, 609, 866, 941
BspANI	GGCC	2 cut(s)	235, 786
BspCNI	CTCAG	2 cut(s)	217, 374
BspFNI	CGCG	1 cut(s)	415
BspLI	GGNNCC	1 cut(s)	309
BspMAI	CTGCAG	1 cut(s)	727
BspPI	GGATC	4 cut(s)	476, 708, 719, 1178
BspQI	GCTCTTC	1 cut(s)	1161
BspTNI	GGTCTC	1 cut(s)	995
BsrBI	CCGCTC	1 cut(s)	941
BsrDI	GCAATG	2 cut(s)	321, 959
BssMI	GATC	6 cut(s)	481, 486, 700, 711, 1052, 1183
Bst4CI	ACNGT	3 cut(s)	262, 527, 601
Bst6I	CTCTTC	3 cut(s)	87, 993, 1161
BstAPI	GCANNNNNTGC	2 cut(s)	11, 320
BstBAI	YACGTR	1 cut(s)	740
BstC8I	GCNNGC	3 cut(s)	174, 237, 1173
BstDEI	CTNAG	3 cut(s)	204, 361, 1119
BstF5I	GGATG	3 cut(s)	190, 430, 1175
BstFNI	CGCG	1 cut(s)	415
BstHHI	GCGC	1 cut(s)	16
BstKTI	GATC	6 cut(s)	484, 489, 703, 714, 1055, 1186
BstMAI	GTCTC	2 cut(s)	533, 995
BstMBI	GATC	6 cut(s)	481, 486, 700, 711, 1052, 1183
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 320, 371, 374, 722
BstPAI	GACNNNNGTC	1 cut(s)	1007
BstSFI	CTRYAG	1 cut(s)	723
BstUI	CGCG	1 cut(s)	415
BstV1I	GCAGC	8 cut(s)	3, 254, 307, 361, 377, 565, 931, 1110
BstX2I	RGATCY	1 cut(s)	700
BstYI	RGATCY	1 cut(s)	700
BsuRI	GGCC	2 cut(s)	235, 786
BtsCI	GGATG	3 cut(s)	190, 430, 1175
BtsI	GCAGTG	2 cut(s)	696, 1150
BtsIMutI	CAGTG	2 cut(s)	696, 1150
Cac8I	GCNNGC	3 cut(s)	174, 237, 1173
CfoI	GCGC	1 cut(s)	16
Csp6I	GTAC	2 cut(s)	417, 741
CspCI	CAANNNNNGTGG	2 cut(s)	1117, 1152
CviAII	CATG	2 cut(s)	346, 912
CviQI	GTAC	2 cut(s)	417, 741
DdeI	CTNAG	3 cut(s)	204, 361, 1119
DpnI	GATC	6 cut(s)	483, 488, 702, 713, 1054, 1185
DpnII	GATC	6 cut(s)	481, 486, 700, 711, 1052, 1183
EaeI	YGGCCR	1 cut(s)	233
Eam1104I	CTCTTC	3 cut(s)	87, 993, 1161
EarI	CTCTTC	3 cut(s)	87, 993, 1161
Eco147I	AGGCCT	1 cut(s)	786
Eco31I	GGTCTC	1 cut(s)	995
Eco57I	CTGAAG	1 cut(s)	644
FaeI	CATG	2 cut(s)	349, 915
FaiI	YATR	8 cut(s)	280, 347, 523, 756, 857, 913, 993, 1025
FaqI	GGGAC	3 cut(s)	193, 610, 696
FatI	CATG	2 cut(s)	345, 911
FauI	CCCGC	1 cut(s)	181
FokI	GGATG	3 cut(s)	177, 417, 1162
FspBI	CTAG	4 cut(s)	135, 629, 936, 1224
GlaI	GCGC	1 cut(s)	15
GsuI	CTGGAG	1 cut(s)	638
HaeIII	GGCC	2 cut(s)	235, 786
HapII	CCGG	2 cut(s)	380, 903
HhaI	GCGC	1 cut(s)	16
Hin1II	CATG	2 cut(s)	349, 915
Hin6I	GCGC	1 cut(s)	14
HinP1I	GCGC	1 cut(s)	14
HindIII	AAGCTT	1 cut(s)	400
HinfI	GANTC	2 cut(s)	179, 1064
HpaII	CCGG	2 cut(s)	380, 903
HphI	GGTGA	4 cut(s)	598, 779, 809, 831
Hpy166II	GTNNAC	3 cut(s)	622, 933, 1018
Hpy188I	TCNGA	6 cut(s)	469, 486, 711, 828, 977, 1050
Hpy188III	TCNNGA	1 cut(s)	595
Hpy8I	GTNNAC	3 cut(s)	622, 933, 1018
Hpy99I	CGWCG	1 cut(s)	424
HpyCH4III	ACNGT	3 cut(s)	262, 527, 601
HpyCH4IV	ACGT	5 cut(s)	107, 121, 422, 464, 739
HpyCH4V	TGCA	8 cut(s)	351, 427, 500, 694, 725, 897, 947, 1175
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 320, 371, 374, 722
HpyF3I	CTNAG	3 cut(s)	204, 361, 1119
HpySE526I	ACGT	5 cut(s)	107, 121, 422, 464, 739
Hsp92II	CATG	2 cut(s)	349, 915
HspAI	GCGC	1 cut(s)	14
Kzo9I	GATC	6 cut(s)	481, 486, 700, 711, 1052, 1183
LguI	GCTCTTC	1 cut(s)	1161
LmnI	GCTCC	3 cut(s)	136, 382, 657
Lsp1109I	GCAGC	8 cut(s)	3, 254, 307, 361, 377, 565, 931, 1110
LweI	GCATC	1 cut(s)	1184
MaeI	CTAG	4 cut(s)	135, 629, 936, 1224
MaeII	ACGT	5 cut(s)	107, 121, 422, 464, 739
MaeIII	GTNAC	4 cut(s)	290, 664, 905, 1087
MalI	GATC	6 cut(s)	483, 488, 702, 713, 1054, 1185
MbiI	CCGCTC	1 cut(s)	941
MboI	GATC	6 cut(s)	481, 486, 700, 711, 1052, 1183
MboII	GAAGA	5 cut(s)	74, 438, 1010, 1165, 1178
MflI	RGATCY	1 cut(s)	700
MluCI	AATT	6 cut(s)	44, 253, 495, 966, 1092, 1215
MluI	ACGCGT	1 cut(s)	413
MlyI	GAGTC	1 cut(s)	173
MmeI	TCCRAC	1 cut(s)	492
MseI	TTAA	7 cut(s)	38, 104, 144, 222, 270, 705, 773
MslI	CAYNNNNRTG	2 cut(s)	477, 952
MspA1I	CMGCKG	3 cut(s)	11, 239, 866
MspI	CCGG	2 cut(s)	380, 903
Mva1269I	GAATGC	1 cut(s)	500
MvnI	CGCG	1 cut(s)	415
MwoI	GCNNNNNNNGC	5 cut(s)	11, 320, 371, 374, 722
NdeII	GATC	6 cut(s)	481, 486, 700, 711, 1052, 1183
NlaIII	CATG	2 cut(s)	349, 915
NlaIV	GGNNCC	1 cut(s)	309
NmuCI	GTSAC	1 cut(s)	290
PceI	AGGCCT	1 cut(s)	786
PciSI	GCTCTTC	1 cut(s)	1161
PcsI	WCGNNNNNNNCGW	2 cut(s)	73, 419
PctI	GAATGC	1 cut(s)	500
PfeI	GAWTC	1 cut(s)	1064
Pfl23II	CGTACG	2 cut(s)	416, 740
PleI	GAGTC	1 cut(s)	173
PpsI	GAGTC	1 cut(s)	173
Ppu21I	YACGTR	1 cut(s)	740
PshAI	GACNNNNGTC	1 cut(s)	1007
PshBI	ATTAAT	1 cut(s)	38
Psp1406I	AACGTT	2 cut(s)	107, 121
PspLI	CGTACG	2 cut(s)	416, 740
PspN4I	GGNNCC	1 cut(s)	309
PstI	CTGCAG	1 cut(s)	727
PsuI	RGATCY	1 cut(s)	700
PvuII	CAGCTG	1 cut(s)	11
RsaI	GTAC	2 cut(s)	418, 742
RsaNI	GTAC	2 cut(s)	417, 741
RseI	CAYNNNNRTG	2 cut(s)	477, 952
SapI	GCTCTTC	1 cut(s)	1161
SaqAI	TTAA	7 cut(s)	38, 104, 144, 222, 270, 705, 773
Sau3AI	GATC	6 cut(s)	481, 486, 700, 711, 1052, 1183
SchI	GAGTC	1 cut(s)	173
SfaNI	GCATC	1 cut(s)	1184
SfcI	CTRYAG	1 cut(s)	723
SmiMI	CAYNNNNRTG	2 cut(s)	477, 952
SpeI	ACTAGT	1 cut(s)	1223
Sse9I	AATT	6 cut(s)	44, 253, 495, 966, 1092, 1215
SseBI	AGGCCT	1 cut(s)	786
SsiI	CCGC	5 cut(s)	174, 239, 609, 866, 941
SspI	AATATT	3 cut(s)	141, 443, 808
SspMI	CTAG	4 cut(s)	135, 629, 936, 1224
StuI	AGGCCT	1 cut(s)	786
TaaI	ACNGT	3 cut(s)	262, 527, 601
TaiI	ACGT	5 cut(s)	110, 124, 425, 467, 742
TaqI	TCGA	3 cut(s)	160, 449, 674
TasI	AATT	6 cut(s)	44, 253, 495, 966, 1092, 1215
TauI	GCSGC	2 cut(s)	242, 944
TfiI	GAWTC	1 cut(s)	1064
Tru1I	TTAA	7 cut(s)	38, 104, 144, 222, 270, 705, 773
Tru9I	TTAA	7 cut(s)	38, 104, 144, 222, 270, 705, 773
TscAI	CASTG	2 cut(s)	696, 1150
TseFI	GTSAC	1 cut(s)	290
TseI	GCWGC	9 cut(s)	11, 16, 242, 320, 365, 374, 578, 944, 1123
Tsp45I	GTSAC	1 cut(s)	290
TspDTI	ATGAA	4 cut(s)	56, 792, 822, 1077
TspGWI	ACGGA	1 cut(s)	713
TspRI	CASTG	2 cut(s)	696, 1150
VspI	ATTAAT	1 cut(s)	38
XapI	RAATTY	1 cut(s)	1215
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1012
XspI	CTAG	4 cut(s)	135, 629, 936, 1224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.