Rh2AG652400

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0006404
Physical Location & Seq
Reverse (-)
87027494 .. 87030516
3023 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG652400.1

Sequence Viewer

Length: 654 bp
ATGGCTGCCTTGCTGTTGGGTTTGTTAGTCATGTACAACCCCAACTCATCCGCGTTGGCTGCTCCGGTGGGTCGGGTCGGTGGAAGTTTGACACCCACGTGCACGACGTCGCACCATCCATCTAAATATTCTTCGACCACAATGAAAACGTCCGACCACTACGATGATCCGATCTGGGAGTTTGCAGTCTCATGGTTCACTCTTTTCTGCTGTTACGCGGGATTTTTTGCGTGGGTTTTGCCTATCTCTAAGTTTTGCAAGGCTGCCTTGTTTATTTTCGGGACAGTTTTATTCGCTATTTGGGTTCACTTTCTAGGTCAAACAAGTGTTGTCAAGCTCCAGCTTCAGGTTACTTCATCGAACACGGGACGAGCAGTGCAAACGGATCTTAATCGGATCGCTGAAACTGCAGATACATCTACACTTACGGGTTTGAGATATGTTTTGAGAGATACAGTAGTAGCTCTATTTCGGCAACCTGATTATTGCATTTCCGGTTACTCATGTGTGGTTATACCAAAGTTCTCTAGAGCAGCGGCTCAGCAATTCTTTGATCAACTTGTGTTCAGAGAGAGGGTTAGATATGATGAAGGAGACCATTGTCAATGTGGACAATATAAAAACTCAAAGCACACCAAGTCAGAGATCGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

217

Amino Acids

24.23

Weight (kDa)

8.4

Isoelectric Point (pI)

26.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1517 PF07466 108 - 200 2.6e-18 Protein of unknown function (DUF1517)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 110
AccII CGCG 2 cut(s) 53, 218
AciI CCGC 3 cut(s) 51, 218, 536
AclWI GGATC 3 cut(s) 161, 393, 404
AcuI CTGAAG 1 cut(s) 329
AcvI CACGTG 1 cut(s) 99
AcyI GRCGYC 1 cut(s) 107
AfaI GTAC 1 cut(s) 35
AfiI CCNNNNNNNGG 1 cut(s) 346
AleI CACNNNNGTG 1 cut(s) 97
AluBI AGCT 3 cut(s) 337, 343, 464
AluI AGCT 3 cut(s) 337, 343, 464
Alw21I GWGCWC 1 cut(s) 104
Alw26I GTCTC 2 cut(s) 193, 588
Alw44I GTGCAC 1 cut(s) 100
AlwI GGATC 3 cut(s) 161, 393, 404
ApaLI GTGCAC 1 cut(s) 100
ApeKI GCWGC 4 cut(s) 5, 59, 263, 533
BaeGI GKGCMC 1 cut(s) 104
BaeI ACNNNNGTAYC 2 cut(s) 444, 477
BbrPI CACGTG 1 cut(s) 99
Bbv12I GWGCWC 1 cut(s) 104
BbvI GCAGC 3 cut(s) 46, 250, 545
BccI CCATC 2 cut(s) 123, 127
BclI TGATCA 1 cut(s) 553
BcoDI GTCTC 2 cut(s) 193, 588
BfaI CTAG 2 cut(s) 314, 528
BfmI CTRYAG 1 cut(s) 408
BisI GCNGC 5 cut(s) 6, 60, 264, 534, 537
BlpI GCTNAGC 1 cut(s) 540
BlsI GCNGC 5 cut(s) 7, 61, 265, 535, 538
BoxI GACNNNNGTC 1 cut(s) 600
BpmI CTGGAG 1 cut(s) 323
Bpu1102I GCTNAGC 1 cut(s) 540
BsaAI YACGTR 1 cut(s) 99
BsaBI GATNNNNATC 1 cut(s) 390
BsaHI GRCGYC 1 cut(s) 107
BsaI GGTCTC 1 cut(s) 588
BsaWI WCCGGW 2 cut(s) 64, 494
Bsc4I CCNNNNNNNGG 1 cut(s) 346
Bse8I GATNNNNATC 1 cut(s) 390
BseGI GGATG 2 cut(s) 47, 115
BseJI GATNNNNATC 1 cut(s) 390
BseLI CCNNNNNNNGG 1 cut(s) 346
BseMII CTCAG 1 cut(s) 554
BseSI GKGCMC 1 cut(s) 104
BseXI GCAGC 3 cut(s) 46, 250, 545
Bsh1236I CGCG 2 cut(s) 53, 218
BsiHKAI GWGCWC 1 cut(s) 104
BsiSI CCGG 2 cut(s) 65, 495
BslFI GGGAC 2 cut(s) 295, 381
BslI CCNNNNNNNGG 1 cut(s) 346
BsmAI GTCTC 2 cut(s) 193, 588
BsmFI GGGAC 2 cut(s) 295, 381
Bso31I GGTCTC 1 cut(s) 588
Bsp1286I GDGCHC 1 cut(s) 104
Bsp1407I TGTACA 1 cut(s) 33
Bsp143I GATC 6 cut(s) 166, 171, 385, 396, 553, 645
Bsp1720I GCTNAGC 1 cut(s) 540
BspACI CCGC 3 cut(s) 51, 218, 536
BspCNI CTCAG 1 cut(s) 553
BspFNI CGCG 2 cut(s) 53, 218
BspMAI CTGCAG 1 cut(s) 412
BspPI GGATC 3 cut(s) 161, 393, 404
BspTNI GGTCTC 1 cut(s) 588
BsrGI TGTACA 1 cut(s) 33
BssMI GATC 6 cut(s) 166, 171, 385, 396, 553, 645
BssNI GRCGYC 1 cut(s) 107
Bst4CI ACNGT 2 cut(s) 286, 457
BstACI GRCGYC 1 cut(s) 107
BstAUI TGTACA 1 cut(s) 33
BstBAI YACGTR 1 cut(s) 99
BstDEI CTNAG 2 cut(s) 249, 540
BstF5I GGATG 2 cut(s) 47, 115
BstFNI CGCG 2 cut(s) 53, 218
BstKTI GATC 6 cut(s) 169, 174, 388, 399, 556, 648
BstMAI GTCTC 2 cut(s) 193, 588
BstMBI GATC 6 cut(s) 166, 171, 385, 396, 553, 645
BstMWI GCNNNNNNNGC 2 cut(s) 59, 407
BstPAI GACNNNNGTC 1 cut(s) 600
BstSFI CTRYAG 1 cut(s) 408
BstSLI GKGCMC 1 cut(s) 104
BstUI CGCG 2 cut(s) 53, 218
BstV1I GCAGC 3 cut(s) 46, 250, 545
BstX2I RGATCY 1 cut(s) 385
BstYI RGATCY 1 cut(s) 385
BtsCI GGATG 2 cut(s) 47, 115
BtsI GCAGTG 1 cut(s) 381
BtsIMutI CAGTG 1 cut(s) 381
Csp6I GTAC 1 cut(s) 34
CviAII CATG 3 cut(s) 31, 192, 504
CviJI RGCY 7 cut(s) 5, 59, 263, 337, 343, 464, 539
CviKI_1 RGCY 7 cut(s) 5, 59, 263, 337, 343, 464, 539
CviQI GTAC 1 cut(s) 34
DdeI CTNAG 2 cut(s) 249, 540
DpnI GATC 6 cut(s) 168, 173, 387, 398, 555, 647
DpnII GATC 6 cut(s) 166, 171, 385, 396, 553, 645
Eco31I GGTCTC 1 cut(s) 588
Eco57I CTGAAG 1 cut(s) 329
Eco72I CACGTG 1 cut(s) 99
FaeI CATG 3 cut(s) 34, 195, 507
FaiI YATR 7 cut(s) 32, 193, 441, 505, 515, 585, 618
FalI AAGNNNNNCTT 2 cut(s) 251, 283
FaqI GGGAC 2 cut(s) 295, 381
FatI CATG 3 cut(s) 30, 191, 503
FauI CCCGC 1 cut(s) 211
FbaI TGATCA 1 cut(s) 553
Fnu4HI GCNGC 5 cut(s) 6, 60, 264, 534, 537
FokI GGATG 2 cut(s) 34, 102
Fsp4HI GCNGC 5 cut(s) 6, 60, 264, 534, 537
FspBI CTAG 2 cut(s) 314, 528
GluI GCNGC 5 cut(s) 6, 60, 264, 534, 537
GsuI CTGGAG 1 cut(s) 323
HapII CCGG 2 cut(s) 65, 495
Hin1I GRCGYC 1 cut(s) 107
Hin1II CATG 3 cut(s) 34, 195, 507
HpaII CCGG 2 cut(s) 65, 495
Hpy166II GTNNAC 4 cut(s) 102, 198, 307, 611
Hpy188I TCNGA 5 cut(s) 154, 171, 396, 569, 643
Hpy188III TCNNGA 2 cut(s) 280, 528
Hpy8I GTNNAC 4 cut(s) 102, 198, 307, 611
Hpy99I CGWCG 2 cut(s) 109, 112
HpyAV CCTTC 1 cut(s) 584
HpyCH4III ACNGT 2 cut(s) 286, 457
HpyCH4IV ACGT 3 cut(s) 98, 107, 149
HpyCH4V TGCA 6 cut(s) 102, 185, 258, 379, 410, 489
HpyF10VI GCNNNNNNNGC 2 cut(s) 59, 407
HpyF3I CTNAG 2 cut(s) 249, 540
HpySE526I ACGT 3 cut(s) 98, 107, 149
Hsp92I GRCGYC 1 cut(s) 107
Hsp92II CATG 3 cut(s) 34, 195, 507
Ksp22I TGATCA 1 cut(s) 553
Kzo9I GATC 6 cut(s) 166, 171, 385, 396, 553, 645
LmnI GCTCC 2 cut(s) 67, 342
LpnPI CCDG 6 cut(s) 78, 160, 332, 353, 492, 508
Lsp1109I GCAGC 3 cut(s) 46, 250, 545
MaeI CTAG 2 cut(s) 314, 528
MaeII ACGT 3 cut(s) 98, 107, 149
MaeIII GTNAC 3 cut(s) 212, 349, 497
MalI GATC 6 cut(s) 168, 173, 387, 398, 555, 647
MboI GATC 6 cut(s) 166, 171, 385, 396, 553, 645
MboII GAAGA 1 cut(s) 123
MflI RGATCY 1 cut(s) 385
MhlI GDGCHC 1 cut(s) 104
MluCI AATT 1 cut(s) 545
MmeI TCCRAC 1 cut(s) 177
MnlI CCTC 1 cut(s) 567
MseI TTAA 1 cut(s) 390
MslI CAYNNNNRTG 2 cut(s) 97, 162
MspA1I CMGCKG 1 cut(s) 536
MspI CCGG 2 cut(s) 65, 495
MvnI CGCG 2 cut(s) 53, 218
MwoI GCNNNNNNNGC 2 cut(s) 59, 407
NdeII GATC 6 cut(s) 166, 171, 385, 396, 553, 645
NlaIII CATG 3 cut(s) 34, 195, 507
OliI CACNNNNGTG 1 cut(s) 97
PcsI WCGNNNNNNNCGW 1 cut(s) 104
PkrI GCNGC 5 cut(s) 7, 61, 265, 535, 538
PmaCI CACGTG 1 cut(s) 99
PmlI CACGTG 1 cut(s) 99
Ppu21I YACGTR 1 cut(s) 99
PshAI GACNNNNGTC 1 cut(s) 600
PspCI CACGTG 1 cut(s) 99
PstI CTGCAG 1 cut(s) 412
PsuI RGATCY 1 cut(s) 385
RsaI GTAC 1 cut(s) 35
RsaNI GTAC 1 cut(s) 34
RseI CAYNNNNRTG 2 cut(s) 97, 162
SaqAI TTAA 1 cut(s) 390
SatI GCNGC 5 cut(s) 6, 60, 264, 534, 537
Sau3AI GATC 6 cut(s) 166, 171, 385, 396, 553, 645
SduI GDGCHC 1 cut(s) 104
SetI ASST 9 cut(s) 101, 110, 152, 319, 339, 345, 351, 466, 481
SfcI CTRYAG 1 cut(s) 408
SmiMI CAYNNNNRTG 2 cut(s) 97, 162
Sse9I AATT 1 cut(s) 545
SsiI CCGC 3 cut(s) 51, 218, 536
SspI AATATT 1 cut(s) 128
SspMI CTAG 2 cut(s) 314, 528
TaaI ACNGT 2 cut(s) 286, 457
TaiI ACGT 3 cut(s) 101, 110, 152
TaqI TCGA 3 cut(s) 134, 359, 648
TasI AATT 1 cut(s) 545
TatI WGTACW 1 cut(s) 33
TauI GCSGC 1 cut(s) 539
Tru1I TTAA 1 cut(s) 390
Tru9I TTAA 1 cut(s) 390
TscAI CASTG 1 cut(s) 381
TseI GCWGC 4 cut(s) 5, 59, 263, 533
TspDTI ATGAA 3 cut(s) 158, 345, 603
TspGWI ACGGA 1 cut(s) 398
TspRI CASTG 1 cut(s) 381
VneI GTGCAC 1 cut(s) 100
XbaI TCTAGA 1 cut(s) 527
XcmI CCANNNNNNNNNTGG 1 cut(s) 605
XspI CTAG 2 cut(s) 314, 528
ZraI GACGTC 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.