Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0006404

Physical Location & Seq

Genomic Coordinates Reverse (-)

89891315 .. 89895735

Gene Structure 4421 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG678500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGCAACAGCTGCGCTGCTCATTGAAGCCAACCCATTAATGAAATTGAAGCAAAACACCCTATTACTCACTTTTCGTCCTCTTCCATCAAAACCAGTCACATTAACGTTCAGCAATCAACGTTGCTTTGCTCCCAGAATATTTAAGAACCCTAAACCTCAATGTTTCTTGCCCTCCGACTCTAAATCAGGCCATCCCTCTCAGTCACAGTTCCACGATGTTCTTAAAGACAATTGGCCAGCGGCAGCAAACCCTAATTTCACAGTCGCCCTTAATAAGTTATGGGAAAAGTGTCACAAGGCATTGAGGAAACCAGCAATGGCTGCCGTGCTGTTGGGTTTGTTAGTCATTTACAACCCCAAGTCAGCAGCGTTGGCTGCTCCGGTGGGTCGGGTCGGTGGAAGCTTGACACCCACGTGTACGACATCGCACCATCCATCTAAATATTCTTCAACCACAATCAAAACGTCCGACCACTACGATGATCCGATCTGGGAGTTTGCAGTCTTATGGTTCACTATTTTCTGCTGTTACGCTGGATTTTTTTCTTGGGTGGTTATACCAAAGTTCTCTAGAGCAGCGGCACAGCAATGCTTTGATCAACTTGTGTTCAGAGAGAGGGTTAGATATGATGAAGAGACCATTGTCAATGTGGACAATATAAAAACTCATAGCACAACAAGTCAGAGATCAACTAATGAATCTCACAATGACAATGTAGAGGTTACGATATTACTTGCTGCTGTTGGGAAGTCTAAGTTGCCCACTATCATTGACAGCAGTGACTTGAAGAAAGTGATGGAAGAGCTTGCATCCATTGATCCCAGCAGACGAGTATTATCTTTTGTCGCGCCCCGGATGACGTACAGTGAGCTGACAAGCAGTATCCATGAACAGCAAGTGGAAAAGATTGATCCCTTACTTGATTGGATGGAGTCCGAATTTGGCTTTAGGCCTGTTGTTTTCTCCAGCTTTTGTGGTGGAAAGCAGGAGAAGGGATTTCTAAAAGCTGTAGAAGCCCTACTGAAGAAAACATCAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0008150 GO:0009987 GO:0016043 GO:0016604 GO:0016607 GO:0022607 GO:0031974 GO:0031981 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043461 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0065003 GO:0070013 GO:0070071 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ATP12

Protein Analysis

347

Amino Acids

38.8

Weight (kDa)

9.01

Isoelectric Point (pI)

43.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1517	PF07466	190 - 279	1.4e-15	Protein of unknown function (DUF1517)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006404)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g07650 FvH4_4g23690
rosa_chinensis	RchiOBHm_Chr2g0174231
rosa_laevigata	RLG00000022227
rosa_multiflora	Rmu_sc0000954.1_g000010 Rmu_sc0003188.1_g000015 Rmu_sc0007150.1_g000008
rosa_roxburghii	Rroxscaffold_160G00433820 Rroxscaffold_2G00078310 Rroxscaffold_2G00078580 Rroxscaffold_4G00327970 Rroxscaffold_5G00372130
rosa_rugosa	Rorug02G0573200 Rorug02G0573600
rosa_samantha	Rh1DG179600 Rh2AG652200 Rh2AG652400 Rh2AG656000 Rh2BG663000 Rh2BG663200 Rh2BG667200 Rh2CG627600 Rh2CG628100 Rh2DG678100 Rh2DG678500 Rh4CG321100
rosa_wichuraiana	Rw2G053580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	851
AciI	CCGC	2 cut(s)	242, 581
AclI	AACGTT	2 cut(s)	107, 121
AclWI	GGATC	3 cut(s)	479, 815, 908
AcoI	YGGCCR	1 cut(s)	236
AcsI	RAATTY	1 cut(s)	941
AcvI	CACGTG	1 cut(s)	417
AfaI	GTAC	2 cut(s)	421, 866
AflIII	ACRYGT	1 cut(s)	416
AgsI	TTSAA	4 cut(s)	26, 49, 453, 790
AleI	CACNNNNGTG	1 cut(s)	415
AluBI	AGCT	6 cut(s)	11, 405, 808, 874, 972, 1010
AluI	AGCT	6 cut(s)	11, 405, 808, 874, 972, 1010
Alw26I	GTCTC	1 cut(s)	632
AlwI	GGATC	3 cut(s)	479, 815, 908
AoxI	GGCC	3 cut(s)	190, 236, 953
ApeKI	GCWGC	8 cut(s)	11, 16, 245, 323, 368, 377, 578, 740
ApoI	RAATTY	1 cut(s)	941
AseI	ATTAAT	1 cut(s)	38
AspLEI	GCGC	2 cut(s)	16, 853
AsuC2I	CCSGG	1 cut(s)	856
BalI	TGGCCA	1 cut(s)	238
BbrPI	CACGTG	1 cut(s)	417
BbvI	GCAGC	7 cut(s)	3, 257, 310, 364, 380, 590, 727
BccI	CCATC	6 cut(s)	94, 201, 441, 445, 793, 925
BceAI	ACGGC	1 cut(s)	311
BciVI	GTATCC	1 cut(s)	896
BclI	TGATCA	1 cut(s)	598
BcnI	CCSGG	1 cut(s)	856
BcoDI	GTCTC	1 cut(s)	632
BfaI	CTAG	1 cut(s)	573
BfmI	CTRYAG	1 cut(s)	1011
BfuI	GTATCC	1 cut(s)	896
Bme1390I	CCNGG	1 cut(s)	856
BmrFI	CCNGG	1 cut(s)	856
BmsI	GCATC	1 cut(s)	821
BoxI	GACNNNNGTC	1 cut(s)	644
BpmI	CTGGAG	1 cut(s)	952
BpuMI	CCSGG	1 cut(s)	856
BsaAI	YACGTR	1 cut(s)	417
BsaI	GGTCTC	1 cut(s)	632
BsaJI	CCNNGG	1 cut(s)	854
BsaWI	WCCGGW	1 cut(s)	382
Bse1I	ACTGG	1 cut(s)	95
Bse3DI	GCAATG	2 cut(s)	324, 596
BseDI	CCNNGG	1 cut(s)	854
BseGI	GGATG	5 cut(s)	193, 433, 812, 864, 936
BseMI	GCAATG	2 cut(s)	324, 596
BseMII	CTCAG	1 cut(s)	215
BseNI	ACTGG	1 cut(s)	95
BseXI	GCAGC	7 cut(s)	3, 257, 310, 364, 380, 590, 727
BseYI	CCCAGC	1 cut(s)	824
Bsh1236I	CGCG	1 cut(s)	851
BshFI	GGCC	3 cut(s)	192, 238, 955
BsiSI	CCGG	2 cut(s)	383, 856
BsmAI	GTCTC	1 cut(s)	632
BsnI	GGCC	3 cut(s)	192, 238, 955
Bso31I	GGTCTC	1 cut(s)	632
Bsp143I	GATC	6 cut(s)	484, 489, 598, 689, 820, 913
BspACI	CCGC	2 cut(s)	242, 581
BspANI	GGCC	3 cut(s)	192, 238, 955
BspCNI	CTCAG	1 cut(s)	214
BspFNI	CGCG	1 cut(s)	851
BspPI	GGATC	3 cut(s)	479, 815, 908
BspQI	GCTCTTC	1 cut(s)	798
BspTNI	GGTCTC	1 cut(s)	632
BsrDI	GCAATG	2 cut(s)	324, 596
BsrI	ACTGG	1 cut(s)	95
BssECI	CCNNGG	1 cut(s)	854
BssMI	GATC	6 cut(s)	484, 489, 598, 689, 820, 913
Bst4CI	ACNGT	3 cut(s)	210, 265, 869
Bst6I	CTCTTC	3 cut(s)	87, 630, 798
BstAPI	GCANNNNNTGC	2 cut(s)	11, 323
BstBAI	YACGTR	1 cut(s)	417
BstC8I	GCNNGC	2 cut(s)	240, 810
BstDEI	CTNAG	2 cut(s)	201, 756
BstF5I	GGATG	5 cut(s)	193, 433, 812, 864, 936
BstFNI	CGCG	1 cut(s)	851
BstHHI	GCGC	2 cut(s)	16, 853
BstKTI	GATC	6 cut(s)	487, 492, 601, 692, 823, 916
BstMAI	GTCTC	1 cut(s)	632
BstMBI	GATC	6 cut(s)	484, 489, 598, 689, 820, 913
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 323, 374, 377, 1016
BstPAI	GACNNNNGTC	1 cut(s)	644
BstSCI	CCNGG	1 cut(s)	854
BstSFI	CTRYAG	1 cut(s)	1011
BstUI	CGCG	1 cut(s)	851
BstV1I	GCAGC	7 cut(s)	3, 257, 310, 364, 380, 590, 727
BsuI	GTATCC	1 cut(s)	896
BsuRI	GGCC	3 cut(s)	192, 238, 955
BtgZI	GCGATG	1 cut(s)	411
BtsCI	GGATG	5 cut(s)	193, 433, 812, 864, 936
BtsI	GCAGTG	1 cut(s)	787
BtsIMutI	CAGTG	3 cut(s)	787, 874, 1044
Cac8I	GCNNGC	2 cut(s)	240, 810
CfoI	GCGC	2 cut(s)	16, 853
Csp6I	GTAC	2 cut(s)	420, 865
CspCI	CAANNNNNGTGG	2 cut(s)	754, 789
CviAII	CATG	1 cut(s)	890
CviQI	GTAC	2 cut(s)	420, 865
DdeI	CTNAG	2 cut(s)	201, 756
DpnI	GATC	6 cut(s)	486, 491, 600, 691, 822, 915
DpnII	GATC	6 cut(s)	484, 489, 598, 689, 820, 913
EaeI	YGGCCR	1 cut(s)	236
Eam1104I	CTCTTC	3 cut(s)	87, 630, 798
EarI	CTCTTC	3 cut(s)	87, 630, 798
Eco147I	AGGCCT	1 cut(s)	955
Eco31I	GGTCTC	1 cut(s)	632
Eco72I	CACGTG	1 cut(s)	417
FaeI	CATG	1 cut(s)	893
FaiI	YATR	7 cut(s)	283, 511, 560, 630, 662, 672, 891
FatI	CATG	1 cut(s)	889
FbaI	TGATCA	1 cut(s)	598
FokI	GGATG	5 cut(s)	180, 420, 799, 871, 943
FspBI	CTAG	1 cut(s)	573
GlaI	GCGC	2 cut(s)	15, 852
GsaI	CCCAGC	1 cut(s)	828
GsuI	CTGGAG	1 cut(s)	952
HaeIII	GGCC	3 cut(s)	192, 238, 955
HapII	CCGG	2 cut(s)	383, 856
HhaI	GCGC	2 cut(s)	16, 853
Hin1II	CATG	1 cut(s)	893
Hin6I	GCGC	2 cut(s)	14, 851
HinP1I	GCGC	2 cut(s)	14, 851
HindIII	AAGCTT	1 cut(s)	403
HinfI	GANTC	3 cut(s)	179, 701, 935
HpaII	CCGG	2 cut(s)	383, 856
Hpy166II	GTNNAC	3 cut(s)	420, 516, 655
Hpy188I	TCNGA	6 cut(s)	178, 472, 489, 614, 687, 940
Hpy188III	TCNNGA	1 cut(s)	573
Hpy8I	GTNNAC	3 cut(s)	420, 516, 655
HpyAV	CCTTC	1 cut(s)	988
HpyCH4III	ACNGT	3 cut(s)	210, 265, 869
HpyCH4IV	ACGT	5 cut(s)	107, 121, 416, 467, 863
HpyCH4V	TGCA	2 cut(s)	503, 812
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 323, 374, 377, 1016
HpyF3I	CTNAG	2 cut(s)	201, 756
HpySE526I	ACGT	5 cut(s)	107, 121, 416, 467, 863
Hsp92II	CATG	1 cut(s)	893
HspAI	GCGC	2 cut(s)	14, 851
Ksp22I	TGATCA	1 cut(s)	598
Kzo9I	GATC	6 cut(s)	484, 489, 598, 689, 820, 913
LguI	GCTCTTC	1 cut(s)	798
LmnI	GCTCC	2 cut(s)	136, 385
Lsp1109I	GCAGC	7 cut(s)	3, 257, 310, 364, 380, 590, 727
LweI	GCATC	1 cut(s)	821
MaeI	CTAG	1 cut(s)	573
MaeII	ACGT	5 cut(s)	107, 121, 416, 467, 863
MaeIII	GTNAC	6 cut(s)	97, 204, 293, 530, 724, 782
MalI	GATC	6 cut(s)	486, 491, 600, 691, 822, 915
MboI	GATC	6 cut(s)	484, 489, 598, 689, 820, 913
MboII	GAAGA	6 cut(s)	74, 441, 647, 802, 815, 1039
MfeI	CAATTG	1 cut(s)	232
MlsI	TGGCCA	1 cut(s)	238
MluCI	AATT	4 cut(s)	44, 232, 256, 941
MluNI	TGGCCA	1 cut(s)	238
MlyI	GAGTC	2 cut(s)	173, 944
MmeI	TCCRAC	2 cut(s)	201, 495
MnlI	CCTC	7 cut(s)	90, 168, 184, 208, 300, 612, 715
Mox20I	TGGCCA	1 cut(s)	238
MscI	TGGCCA	1 cut(s)	238
MseI	TTAA	5 cut(s)	38, 104, 144, 225, 273
MslI	CAYNNNNRTG	4 cut(s)	415, 480, 589, 1039
Msp20I	TGGCCA	1 cut(s)	238
MspA1I	CMGCKG	3 cut(s)	11, 242, 581
MspI	CCGG	2 cut(s)	383, 856
MspR9I	CCNGG	1 cut(s)	856
MunI	CAATTG	1 cut(s)	232
MvnI	CGCG	1 cut(s)	851
MwoI	GCNNNNNNNGC	5 cut(s)	11, 323, 374, 377, 1016
NciI	CCSGG	1 cut(s)	856
NdeII	GATC	6 cut(s)	484, 489, 598, 689, 820, 913
NlaIII	CATG	1 cut(s)	893
NmuCI	GTSAC	4 cut(s)	97, 204, 293, 782
OliI	CACNNNNGTG	1 cut(s)	415
PceI	AGGCCT	1 cut(s)	955
PciSI	GCTCTTC	1 cut(s)	798
PfeI	GAWTC	1 cut(s)	701
PleI	GAGTC	2 cut(s)	173, 943
PmaCI	CACGTG	1 cut(s)	417
PmlI	CACGTG	1 cut(s)	417
PpsI	GAGTC	2 cut(s)	173, 943
Ppu21I	YACGTR	1 cut(s)	417
PshAI	GACNNNNGTC	1 cut(s)	644
PshBI	ATTAAT	1 cut(s)	38
Psp1406I	AACGTT	2 cut(s)	107, 121
PspCI	CACGTG	1 cut(s)	417
PspFI	CCCAGC	1 cut(s)	824
PvuII	CAGCTG	1 cut(s)	11
RsaI	GTAC	2 cut(s)	421, 866
RsaNI	GTAC	2 cut(s)	420, 865
RseI	CAYNNNNRTG	4 cut(s)	415, 480, 589, 1039
SapI	GCTCTTC	1 cut(s)	798
SaqAI	TTAA	5 cut(s)	38, 104, 144, 225, 273
Sau3AI	GATC	6 cut(s)	484, 489, 598, 689, 820, 913
SchI	GAGTC	2 cut(s)	173, 944
ScrFI	CCNGG	1 cut(s)	856
SfaNI	GCATC	1 cut(s)	821
SfcI	CTRYAG	1 cut(s)	1011
SmiMI	CAYNNNNRTG	4 cut(s)	415, 480, 589, 1039
Sse9I	AATT	4 cut(s)	44, 232, 256, 941
SseBI	AGGCCT	1 cut(s)	955
SsiI	CCGC	2 cut(s)	242, 581
SspI	AATATT	2 cut(s)	141, 446
SspMI	CTAG	1 cut(s)	573
StuI	AGGCCT	1 cut(s)	955
StyD4I	CCNGG	1 cut(s)	854
TaaI	ACNGT	3 cut(s)	210, 265, 869
TaiI	ACGT	5 cut(s)	110, 124, 419, 470, 866
TasI	AATT	4 cut(s)	44, 232, 256, 941
TauI	GCSGC	2 cut(s)	245, 584
TfiI	GAWTC	1 cut(s)	701
Tru1I	TTAA	5 cut(s)	38, 104, 144, 225, 273
Tru9I	TTAA	5 cut(s)	38, 104, 144, 225, 273
TscAI	CASTG	3 cut(s)	787, 874, 1044
TseFI	GTSAC	4 cut(s)	97, 204, 293, 782
TseI	GCWGC	8 cut(s)	11, 16, 245, 323, 368, 377, 578, 740
Tsp45I	GTSAC	4 cut(s)	97, 204, 293, 782
TspDTI	ATGAA	4 cut(s)	56, 648, 714, 906
TspRI	CASTG	3 cut(s)	787, 874, 1044
VspI	ATTAAT	1 cut(s)	38
XapI	RAATTY	1 cut(s)	941
XbaI	TCTAGA	1 cut(s)	572
XcmI	CCANNNNNNNNNTGG	1 cut(s)	649
XspI	CTAG	1 cut(s)	573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.