Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007150.1

Orthogroup ID

OG0006404

Physical Location & Seq

Genomic Coordinates Reverse (-)

37381 .. 38389

Gene Structure 1009 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007150.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

atggcaacagctgcgctgctcattgaagccaacccattaatgaaattgaagcaaaacaccctattacgcacttttcgtcctcttccatcaaaaccaatcgcattaacgtttagcaatcaacgttgctttgctcctagaatatttaagaaccctaaacctcgatgtttcttgcccgccgactctaaatgtcatccctctcaatctcagtccctcaatgttcttaaagataatcggccagcggcagcaaaccctaatttcacagtcgccgttaataaggtatgggaaaagtgtcacagggcattgagggaaccagcaatggctgccgtgctgtttggtttgttagtcatgtgcaaccccaactcagcagcgttggctgctccggtgggtcgggtcggtggaagcttgacactcacgcgtacgacgttgcaccatccatctaaatattcttcgaccacaacggccgaccactacgatgatccgatctgggaaattgcattccattttttctttattttatactgtctctggggattgtttgcgttgctttcgccttaccccaagttttacacggctgctttgtttattttcgggacagttttcaccgctatttgggttcactctctaggtcaaacaagtgttgtcaagctccagcttcaggttactttatcgaacacaggacgagcagtgcaaacggatcttaatcggatcgctgaaactgcagatacctctacacgtacgggtttgagatacagcggtagctctatttcggcaacctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1517

Protein Analysis

258

Amino Acids

28.46

Weight (kDa)

9.87

Isoelectric Point (pI)

38.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006404)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g07650 FvH4_4g23690
rosa_chinensis	RchiOBHm_Chr2g0174231
rosa_laevigata	RLG00000022227
rosa_multiflora	Rmu_sc0000954.1_g000010 Rmu_sc0003188.1_g000015 Rmu_sc0007150.1_g000008
rosa_roxburghii	Rroxscaffold_160G00433820 Rroxscaffold_2G00078310 Rroxscaffold_2G00078580 Rroxscaffold_4G00327970 Rroxscaffold_5G00372130
rosa_rugosa	Rorug02G0573200 Rorug02G0573600
rosa_samantha	Rh1DG179600 Rh2AG652200 Rh2AG652400 Rh2AG656000 Rh2BG663000 Rh2BG663200 Rh2BG667200 Rh2CG627600 Rh2CG628100 Rh2DG678100 Rh2DG678500 Rh4CG321100
rosa_wichuraiana	Rw2G053580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	415
AciI	CCGC	4 cut(s)	174, 239, 603, 753
AclI	AACGTT	2 cut(s)	107, 121
AclWI	GGATC	3 cut(s)	470, 702, 713
AcoI	YGGCCR	2 cut(s)	233, 459
AcuI	CTGAAG	1 cut(s)	638
AfaI	GTAC	2 cut(s)	418, 736
AfiI	CCNNNNNNNGG	2 cut(s)	609, 655
AflIII	ACRYGT	2 cut(s)	413, 731
AgsI	TTSAA	2 cut(s)	26, 49
AluBI	AGCT	5 cut(s)	11, 402, 646, 652, 759
AluI	AGCT	5 cut(s)	11, 402, 646, 652, 759
Alw26I	GTCTC	1 cut(s)	527
AlwI	GGATC	3 cut(s)	470, 702, 713
AoxI	GGCC	2 cut(s)	233, 459
ApeKI	GCWGC	7 cut(s)	11, 16, 242, 320, 365, 374, 572
AseI	ATTAAT	1 cut(s)	38
AspLEI	GCGC	1 cut(s)	16
AsuHPI	GGTGA	1 cut(s)	592
BaeI	ACNNNNGTAYC	2 cut(s)	739, 772
BbvI	GCAGC	6 cut(s)	3, 254, 307, 361, 377, 559
BccI	CCATC	3 cut(s)	94, 438, 442
BceAI	ACGGC	4 cut(s)	251, 308, 474, 585
BcoDI	GTCTC	1 cut(s)	527
BfaI	CTAG	2 cut(s)	135, 623
BfmI	CTRYAG	1 cut(s)	717
BisI	GCNGC	8 cut(s)	12, 17, 240, 243, 321, 366, 375, 573
BlsI	GCNGC	8 cut(s)	13, 18, 241, 244, 322, 367, 376, 574
BmiI	GGNNCC	1 cut(s)	309
BpmI	CTGGAG	1 cut(s)	632
BsaAI	YACGTR	1 cut(s)	734
BsaBI	GATNNNNATC	1 cut(s)	699
BsaWI	WCCGGW	1 cut(s)	379
Bsc4I	CCNNNNNNNGG	2 cut(s)	609, 655
Bse3DI	GCAATG	1 cut(s)	321
Bse8I	GATNNNNATC	1 cut(s)	699
BseGI	GGATG	2 cut(s)	190, 430
BseJI	GATNNNNATC	1 cut(s)	699
BseLI	CCNNNNNNNGG	2 cut(s)	609, 655
BseMI	GCAATG	1 cut(s)	321
BseMII	CTCAG	2 cut(s)	218, 375
BseX3I	CGGCCG	1 cut(s)	459
BseXI	GCAGC	6 cut(s)	3, 254, 307, 361, 377, 559
Bsh1236I	CGCG	1 cut(s)	415
Bsh1285I	CGRYCG	1 cut(s)	462
BshFI	GGCC	2 cut(s)	235, 461
BsiEI	CGRYCG	1 cut(s)	462
BsiSI	CCGG	1 cut(s)	380
BsiWI	CGTACG	2 cut(s)	416, 734
BslFI	GGGAC	2 cut(s)	193, 604
BslI	CCNNNNNNNGG	2 cut(s)	609, 655
BsmAI	GTCTC	1 cut(s)	527
BsmFI	GGGAC	2 cut(s)	193, 604
BsmI	GAATGC	1 cut(s)	494
BsnI	GGCC	2 cut(s)	235, 461
Bsp143I	GATC	4 cut(s)	475, 480, 694, 705
BspACI	CCGC	4 cut(s)	174, 239, 603, 753
BspANI	GGCC	2 cut(s)	235, 461
BspCNI	CTCAG	2 cut(s)	217, 374
BspFNI	CGCG	1 cut(s)	415
BspLI	GGNNCC	1 cut(s)	309
BspMAI	CTGCAG	1 cut(s)	721
BspPI	GGATC	3 cut(s)	470, 702, 713
BsrDI	GCAATG	1 cut(s)	321
BssMI	GATC	4 cut(s)	475, 480, 694, 705
Bst4CI	ACNGT	3 cut(s)	262, 521, 595
Bst6I	CTCTTC	1 cut(s)	87
BstAPI	GCANNNNNTGC	2 cut(s)	11, 320
BstBAI	YACGTR	1 cut(s)	734
BstC8I	GCNNGC	2 cut(s)	174, 237
BstDEI	CTNAG	2 cut(s)	204, 361
BstF5I	GGATG	2 cut(s)	190, 430
BstFNI	CGCG	1 cut(s)	415
BstHHI	GCGC	1 cut(s)	16
BstKTI	GATC	4 cut(s)	478, 483, 697, 708
BstMAI	GTCTC	1 cut(s)	527
BstMBI	GATC	4 cut(s)	475, 480, 694, 705
BstMCI	CGRYCG	1 cut(s)	462
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 320, 371, 374, 716
BstSFI	CTRYAG	1 cut(s)	717
BstUI	CGCG	1 cut(s)	415
BstV1I	GCAGC	6 cut(s)	3, 254, 307, 361, 377, 559
BstX2I	RGATCY	1 cut(s)	694
BstYI	RGATCY	1 cut(s)	694
BstZI	CGGCCG	1 cut(s)	459
BsuRI	GGCC	2 cut(s)	235, 461
BtsCI	GGATG	2 cut(s)	190, 430
BtsI	GCAGTG	1 cut(s)	690
BtsIMutI	CAGTG	1 cut(s)	690
Cac8I	GCNNGC	2 cut(s)	174, 237
CfoI	GCGC	1 cut(s)	16
Csp6I	GTAC	2 cut(s)	417, 735
CviAII	CATG	1 cut(s)	346
CviQI	GTAC	2 cut(s)	417, 735
DdeI	CTNAG	2 cut(s)	204, 361
DpnI	GATC	4 cut(s)	477, 482, 696, 707
DpnII	GATC	4 cut(s)	475, 480, 694, 705
EaeI	YGGCCR	2 cut(s)	233, 459
EagI	CGGCCG	1 cut(s)	459
Eam1104I	CTCTTC	1 cut(s)	87
EarI	CTCTTC	1 cut(s)	87
EclXI	CGGCCG	1 cut(s)	459
Eco52I	CGGCCG	1 cut(s)	459
Eco57I	CTGAAG	1 cut(s)	638
FaeI	CATG	1 cut(s)	349
FaiI	YATR	3 cut(s)	280, 347, 517
FaqI	GGGAC	2 cut(s)	193, 604
FatI	CATG	1 cut(s)	345
FauI	CCCGC	1 cut(s)	181
Fnu4HI	GCNGC	8 cut(s)	12, 17, 240, 243, 321, 366, 375, 573
FokI	GGATG	2 cut(s)	177, 417
Fsp4HI	GCNGC	8 cut(s)	12, 17, 240, 243, 321, 366, 375, 573
FspBI	CTAG	2 cut(s)	135, 623
GlaI	GCGC	1 cut(s)	15
GluI	GCNGC	8 cut(s)	12, 17, 240, 243, 321, 366, 375, 573
GsuI	CTGGAG	1 cut(s)	632
HaeIII	GGCC	2 cut(s)	235, 461
HapII	CCGG	1 cut(s)	380
HhaI	GCGC	1 cut(s)	16
Hin1II	CATG	1 cut(s)	349
Hin6I	GCGC	1 cut(s)	14
HinP1I	GCGC	1 cut(s)	14
HindIII	AAGCTT	1 cut(s)	400
HinfI	GANTC	1 cut(s)	179
HpaII	CCGG	1 cut(s)	380
HphI	GGTGA	1 cut(s)	592
Hpy166II	GTNNAC	1 cut(s)	616
Hpy188I	TCNGA	2 cut(s)	480, 705
Hpy188III	TCNNGA	1 cut(s)	589
Hpy8I	GTNNAC	1 cut(s)	616
Hpy99I	CGWCG	1 cut(s)	424
HpyCH4III	ACNGT	3 cut(s)	262, 521, 595
HpyCH4IV	ACGT	4 cut(s)	107, 121, 422, 733
HpyCH4V	TGCA	5 cut(s)	351, 427, 494, 688, 719
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 320, 371, 374, 716
HpyF3I	CTNAG	2 cut(s)	204, 361
HpySE526I	ACGT	4 cut(s)	107, 121, 422, 733
Hsp92II	CATG	1 cut(s)	349
HspAI	GCGC	1 cut(s)	14
Kzo9I	GATC	4 cut(s)	475, 480, 694, 705
LmnI	GCTCC	3 cut(s)	136, 382, 651
LpnPI	CCDG	9 cut(s)	249, 280, 324, 393, 469, 511, 641, 660, 662
Lsp1109I	GCAGC	6 cut(s)	3, 254, 307, 361, 377, 559
MaeI	CTAG	2 cut(s)	135, 623
MaeII	ACGT	4 cut(s)	107, 121, 422, 733
MaeIII	GTNAC	2 cut(s)	290, 658
MalI	GATC	4 cut(s)	477, 482, 696, 707
MboI	GATC	4 cut(s)	475, 480, 694, 705
MboII	GAAGA	2 cut(s)	74, 438
MflI	RGATCY	1 cut(s)	694
MluCI	AATT	3 cut(s)	44, 253, 489
MluI	ACGCGT	1 cut(s)	413
MlyI	GAGTC	1 cut(s)	173
MnlI	CCTC	6 cut(s)	90, 168, 205, 221, 297, 736
MseI	TTAA	6 cut(s)	38, 104, 144, 222, 270, 699
MslI	CAYNNNNRTG	1 cut(s)	471
MspA1I	CMGCKG	3 cut(s)	11, 239, 753
MspI	CCGG	1 cut(s)	380
Mva1269I	GAATGC	1 cut(s)	494
MvnI	CGCG	1 cut(s)	415
MwoI	GCNNNNNNNGC	5 cut(s)	11, 320, 371, 374, 716
NdeII	GATC	4 cut(s)	475, 480, 694, 705
NlaIII	CATG	1 cut(s)	349
NlaIV	GGNNCC	1 cut(s)	309
NmuCI	GTSAC	1 cut(s)	290
PcsI	WCGNNNNNNNCGW	2 cut(s)	73, 419
PctI	GAATGC	1 cut(s)	494
Pfl23II	CGTACG	2 cut(s)	416, 734
PkrI	GCNGC	8 cut(s)	13, 18, 241, 244, 322, 367, 376, 574
PleI	GAGTC	1 cut(s)	173
PpsI	GAGTC	1 cut(s)	173
Ppu21I	YACGTR	1 cut(s)	734
PshBI	ATTAAT	1 cut(s)	38
Psp1406I	AACGTT	2 cut(s)	107, 121
PspLI	CGTACG	2 cut(s)	416, 734
PspN4I	GGNNCC	1 cut(s)	309
PstI	CTGCAG	1 cut(s)	721
PsuI	RGATCY	1 cut(s)	694
PvuII	CAGCTG	1 cut(s)	11
RsaI	GTAC	2 cut(s)	418, 736
RsaNI	GTAC	2 cut(s)	417, 735
RseI	CAYNNNNRTG	1 cut(s)	471
SaqAI	TTAA	6 cut(s)	38, 104, 144, 222, 270, 699
SatI	GCNGC	8 cut(s)	12, 17, 240, 243, 321, 366, 375, 573
Sau3AI	GATC	4 cut(s)	475, 480, 694, 705
SchI	GAGTC	1 cut(s)	173
SfcI	CTRYAG	1 cut(s)	717
SmiMI	CAYNNNNRTG	1 cut(s)	471
Sse9I	AATT	3 cut(s)	44, 253, 489
SsiI	CCGC	4 cut(s)	174, 239, 603, 753
SspI	AATATT	2 cut(s)	141, 443
SspMI	CTAG	2 cut(s)	135, 623
TaaI	ACNGT	3 cut(s)	262, 521, 595
TaiI	ACGT	4 cut(s)	110, 124, 425, 736
TaqI	TCGA	3 cut(s)	160, 449, 668
TasI	AATT	3 cut(s)	44, 253, 489
TauI	GCSGC	1 cut(s)	242
Tru1I	TTAA	6 cut(s)	38, 104, 144, 222, 270, 699
Tru9I	TTAA	6 cut(s)	38, 104, 144, 222, 270, 699
TscAI	CASTG	1 cut(s)	690
TseFI	GTSAC	1 cut(s)	290
TseI	GCWGC	7 cut(s)	11, 16, 242, 320, 365, 374, 572
Tsp45I	GTSAC	1 cut(s)	290
TspDTI	ATGAA	1 cut(s)	56
TspGWI	ACGGA	1 cut(s)	707
TspRI	CASTG	1 cut(s)	690
VspI	ATTAAT	1 cut(s)	38
XspI	CTAG	2 cut(s)	135, 623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.