Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003188.1

Orthogroup ID

OG0006404

Physical Location & Seq

Genomic Coordinates Reverse (-)

57652 .. 63441

Gene Structure 5790 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003188.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

atggctgccttgctgttgggtttgttagtcatgtacaaccccaactcatccgcgttggctgctccggtgggtcgggtcggtggaagtttgacacccacgtgcacgacgtcgcaccatccatctaaatattcttcgaccacaatgaaaacgtccgaccactacgatgatccgatctgggagtttgcagtctcatggttcactcttttctgctgttacgcgggattttttgcgtgggttttgcctatctctaagttttgcaaggctgccttgtttattttcgggacagttttattcgctatttgggttcactttctaggtcaaacaagtgttgtcaagctccagcttcaggtcattgctcaaatgggttgcactcaaaattggaaattgttttctccaattagaattataggccgtctccggctcaggcgctcgacccaggcagtctacctctctcctccagactcgggccgcccaccacggcgtcgtcaccagaggaatcgacctcgacgactggctggtcctaatccagatcggaagaatgctgaacctgaaggaagtgaatcggagattggggatgttgaccaggctcccagccaccacttctccacggatcacagcgccgaattcgaagtcgacgacttctccgccaaagatgacggcggttccactcccaagtcctcctccgccgcggcgattcatcgaacacctcgagctacaggtccaccggagaagggatttctaaaagctgtagaagccctactgaagaaaacagatgagtgtgaattagcagcaattgatgctattgcaggagcagcacactccctaacaattgctcttggattttttcgtgggaaactgcagattgaagaagcaattgagttgattagacttgaagaagattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0008150 GO:0009987 GO:0016043 GO:0016604 GO:0016607 GO:0022607 GO:0031974 GO:0031981 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043461 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0065003 GO:0070013 GO:0070071 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ATP12

Protein Analysis

300

Amino Acids

32.98

Weight (kDa)

8.2

Isoelectric Point (pI)

47.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006404)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g07650 FvH4_4g23690
rosa_chinensis	RchiOBHm_Chr2g0174231
rosa_laevigata	RLG00000022227
rosa_multiflora	Rmu_sc0000954.1_g000010 Rmu_sc0003188.1_g000015 Rmu_sc0007150.1_g000008
rosa_roxburghii	Rroxscaffold_160G00433820 Rroxscaffold_2G00078310 Rroxscaffold_2G00078580 Rroxscaffold_4G00327970 Rroxscaffold_5G00372130
rosa_rugosa	Rorug02G0573200 Rorug02G0573600
rosa_samantha	Rh1DG179600 Rh2AG652200 Rh2AG652400 Rh2AG656000 Rh2BG663000 Rh2BG663200 Rh2BG667200 Rh2CG627600 Rh2CG628100 Rh2DG678100 Rh2DG678500 Rh4CG321100
rosa_wichuraiana	Rw2G053580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	516
AatII	GACGTC	1 cut(s)	110
AccI	GTMKAC	2 cut(s)	444, 633
AccII	CGCG	3 cut(s)	53, 218, 689
AciI	CCGC	8 cut(s)	51, 218, 469, 645, 660, 684, 687, 689
AclWI	GGATC	2 cut(s)	161, 618
AcsI	RAATTY	1 cut(s)	623
AcuI	CTGAAG	3 cut(s)	329, 570, 782
AcvI	CACGTG	1 cut(s)	99
AcyI	GRCGYC	2 cut(s)	107, 481
AfaI	GTAC	1 cut(s)	35
AfiI	CCNNNNNNNGG	3 cut(s)	346, 464, 731
AgsI	TTSAA	2 cut(s)	866, 893
AjnI	CCWGG	2 cut(s)	435, 582
AjuI	GAANNNNNNNTTGG	2 cut(s)	552, 584
AleI	CACNNNNGTG	1 cut(s)	97
AluBI	AGCT	4 cut(s)	337, 343, 713, 746
AluI	AGCT	4 cut(s)	337, 343, 713, 746
Alw21I	GWGCWC	1 cut(s)	104
Alw26I	GTCTC	2 cut(s)	193, 419
Alw44I	GTGCAC	1 cut(s)	100
AlwI	GGATC	2 cut(s)	161, 618
Ama87I	CYCGRG	2 cut(s)	463, 708
AoxI	GGCC	2 cut(s)	409, 466
ApaLI	GTGCAC	1 cut(s)	100
ApeKI	GCWGC	5 cut(s)	5, 59, 263, 788, 812
ApoI	RAATTY	1 cut(s)	623
ArsI	GACNNNNNNTTYG	2 cut(s)	615, 647
AspLEI	GCGC	2 cut(s)	429, 620
AspS9I	GGNCC	3 cut(s)	466, 518, 719
AsuHPI	GGTGA	1 cut(s)	479
AsuII	TTCGAA	1 cut(s)	627
AvaI	CYCGRG	2 cut(s)	463, 708
AvaII	GGWCC	2 cut(s)	518, 719
BaeGI	GKGCMC	1 cut(s)	104
BbrPI	CACGTG	1 cut(s)	99
Bbv12I	GWGCWC	1 cut(s)	104
BbvI	GCAGC	4 cut(s)	46, 250, 800, 824
BccI	CCATC	2 cut(s)	123, 127
BceAI	ACGGC	3 cut(s)	396, 494, 673
BciT130I	CCWGG	2 cut(s)	437, 584
BcoDI	GTCTC	2 cut(s)	193, 419
BfaI	CTAG	1 cut(s)	314
BfmI	CTRYAG	3 cut(s)	714, 747, 857
BfoI	RGCGCY	2 cut(s)	430, 621
BisI	GCNGC	8 cut(s)	6, 60, 264, 469, 687, 690, 789, 813
BlsI	GCNGC	8 cut(s)	7, 61, 265, 470, 688, 691, 790, 814
Bme1390I	CCNGG	2 cut(s)	437, 584
Bme18I	GGWCC	2 cut(s)	518, 719
BmeT110I	CYCGRG	2 cut(s)	463, 708
BmgT120I	GGNCC	3 cut(s)	466, 518, 719
BmiI	GGNNCC	2 cut(s)	588, 664
BmrFI	CCNGG	2 cut(s)	437, 584
BmsI	GCATC	1 cut(s)	787
BpmI	CTGGAG	2 cut(s)	323, 441
Bpu10I	CCTNAGC	1 cut(s)	422
Bpu14I	TTCGAA	1 cut(s)	627
BsaAI	YACGTR	1 cut(s)	99
BsaHI	GRCGYC	2 cut(s)	107, 481
BsaJI	CCNNGG	4 cut(s)	435, 476, 606, 687
BsaWI	WCCGGW	2 cut(s)	64, 724
BsaXI	ACNNNNNCTCC	4 cut(s)	587, 617, 626, 656
Bsc4I	CCNNNNNNNGG	3 cut(s)	346, 464, 731
Bse1I	ACTGG	1 cut(s)	516
Bse3DI	GCAATG	1 cut(s)	351
BseBI	CCWGG	2 cut(s)	437, 584
BseDI	CCNNGG	4 cut(s)	435, 476, 606, 687
BseGI	GGATG	3 cut(s)	47, 115, 580
BseLI	CCNNNNNNNGG	3 cut(s)	346, 464, 731
BseMI	GCAATG	1 cut(s)	351
BseMII	CTCAG	1 cut(s)	436
BseNI	ACTGG	1 cut(s)	516
BseRI	GAGGAG	2 cut(s)	444, 670
BseSI	GKGCMC	1 cut(s)	104
BseXI	GCAGC	4 cut(s)	46, 250, 800, 824
BseYI	CCCAGC	1 cut(s)	590
Bsh1236I	CGCG	3 cut(s)	53, 218, 689
BshFI	GGCC	2 cut(s)	411, 468
BsiHKAI	GWGCWC	1 cut(s)	104
BsiHKCI	CYCGRG	2 cut(s)	463, 708
BsiSI	CCGG	3 cut(s)	65, 418, 725
BslFI	GGGAC	1 cut(s)	295
BslI	CCNNNNNNNGG	3 cut(s)	346, 464, 731
BsmAI	GTCTC	2 cut(s)	193, 419
BsmBI	CGTCTC	1 cut(s)	419
BsmFI	GGGAC	1 cut(s)	295
BsmI	GAATGC	1 cut(s)	544
BsnI	GGCC	2 cut(s)	411, 468
BsoBI	CYCGRG	2 cut(s)	463, 708
Bsp119I	TTCGAA	1 cut(s)	627
Bsp1286I	GDGCHC	1 cut(s)	104
Bsp1407I	TGTACA	1 cut(s)	33
Bsp143I	GATC	4 cut(s)	166, 171, 529, 610
BspACI	CCGC	8 cut(s)	51, 218, 469, 645, 660, 684, 687, 689
BspANI	GGCC	2 cut(s)	411, 468
BspCNI	CTCAG	1 cut(s)	435
BspFNI	CGCG	3 cut(s)	53, 218, 689
BspLI	GGNNCC	2 cut(s)	588, 664
BspMAI	CTGCAG	1 cut(s)	861
BspPI	GGATC	2 cut(s)	161, 618
BspT104I	TTCGAA	1 cut(s)	627
BsrDI	GCAATG	1 cut(s)	351
BsrGI	TGTACA	1 cut(s)	33
BsrI	ACTGG	1 cut(s)	516
BssECI	CCNNGG	4 cut(s)	435, 476, 606, 687
BssMI	GATC	4 cut(s)	166, 171, 529, 610
BssNI	GRCGYC	2 cut(s)	107, 481
Bst2UI	CCWGG	2 cut(s)	437, 584
Bst4CI	ACNGT	1 cut(s)	286
BstACI	GRCGYC	2 cut(s)	107, 481
BstAPI	GCANNNNNTGC	1 cut(s)	797
BstAUI	TGTACA	1 cut(s)	33
BstBAI	YACGTR	1 cut(s)	99
BstBI	TTCGAA	1 cut(s)	627
BstDEI	CTNAG	2 cut(s)	249, 422
BstDSI	CCRYGG	3 cut(s)	476, 606, 687
BstF5I	GGATG	3 cut(s)	47, 115, 580
BstFNI	CGCG	3 cut(s)	53, 218, 689
BstH2I	RGCGCY	2 cut(s)	430, 621
BstHHI	GCGC	2 cut(s)	429, 620
BstKTI	GATC	4 cut(s)	169, 174, 532, 613
BstMAI	GTCTC	2 cut(s)	193, 419
BstMBI	GATC	4 cut(s)	166, 171, 529, 610
BstMWI	GCNNNNNNNGC	4 cut(s)	59, 752, 797, 812
BstNI	CCWGG	2 cut(s)	437, 584
BstSCI	CCNGG	2 cut(s)	435, 582
BstSFI	CTRYAG	3 cut(s)	714, 747, 857
BstSLI	GKGCMC	1 cut(s)	104
BstUI	CGCG	3 cut(s)	53, 218, 689
BstV1I	GCAGC	4 cut(s)	46, 250, 800, 824
BsuRI	GGCC	2 cut(s)	411, 468
BtgI	CCRYGG	3 cut(s)	476, 606, 687
BtsCI	GGATG	3 cut(s)	47, 115, 580
CfoI	GCGC	2 cut(s)	429, 620
Cfr13I	GGNCC	3 cut(s)	466, 518, 719
Cfr42I	CCGCGG	1 cut(s)	690
CseI	GACGC	1 cut(s)	470
Csp6I	GTAC	1 cut(s)	34
CviAII	CATG	2 cut(s)	31, 192
CviQI	GTAC	1 cut(s)	34
DdeI	CTNAG	2 cut(s)	249, 422
DpnI	GATC	4 cut(s)	168, 173, 531, 612
DpnII	GATC	4 cut(s)	166, 171, 529, 610
DrdI	GACNNNNNNGTC	1 cut(s)	516
DseDI	GACNNNNNNGTC	1 cut(s)	516
EciI	GGCGGA	2 cut(s)	634, 673
Eco47I	GGWCC	2 cut(s)	518, 719
Eco57I	CTGAAG	3 cut(s)	329, 570, 782
Eco72I	CACGTG	1 cut(s)	99
Eco88I	CYCGRG	2 cut(s)	463, 708
EcoRI	GAATTC	1 cut(s)	623
EcoRII	CCWGG	2 cut(s)	435, 582
Esp3I	CGTCTC	1 cut(s)	419
FaeI	CATG	2 cut(s)	34, 195
FaiI	YATR	3 cut(s)	32, 193, 407
FalI	AAGNNNNNCTT	2 cut(s)	251, 283
FaqI	GGGAC	1 cut(s)	295
FatI	CATG	2 cut(s)	30, 191
FauI	CCCGC	1 cut(s)	211
FblI	GTMKAC	2 cut(s)	444, 633
Fnu4HI	GCNGC	8 cut(s)	6, 60, 264, 469, 687, 690, 789, 813
FokI	GGATG	3 cut(s)	34, 102, 587
Fsp4HI	GCNGC	8 cut(s)	6, 60, 264, 469, 687, 690, 789, 813
FspBI	CTAG	1 cut(s)	314
GlaI	GCGC	2 cut(s)	428, 619
GluI	GCNGC	8 cut(s)	6, 60, 264, 469, 687, 690, 789, 813
GsaI	CCCAGC	1 cut(s)	594
GsuI	CTGGAG	2 cut(s)	323, 441
HaeII	RGCGCY	2 cut(s)	430, 621
HaeIII	GGCC	2 cut(s)	411, 468
HapII	CCGG	3 cut(s)	65, 418, 725
HgaI	GACGC	1 cut(s)	470
HhaI	GCGC	2 cut(s)	429, 620
Hin1I	GRCGYC	2 cut(s)	107, 481
Hin1II	CATG	2 cut(s)	34, 195
Hin6I	GCGC	2 cut(s)	427, 618
HinP1I	GCGC	2 cut(s)	427, 618
HincII	GTYRAC	2 cut(s)	580, 634
HindII	GTYRAC	2 cut(s)	580, 634
HinfI	GANTC	4 cut(s)	461, 496, 560, 694
HpaII	CCGG	3 cut(s)	65, 418, 725
HphI	GGTGA	1 cut(s)	479
Hpy166II	GTNNAC	7 cut(s)	102, 198, 307, 445, 580, 634, 722
Hpy188I	TCNGA	4 cut(s)	154, 171, 534, 565
Hpy188III	TCNNGA	3 cut(s)	280, 458, 527
Hpy8I	GTNNAC	7 cut(s)	102, 198, 307, 445, 580, 634, 722
Hpy99I	CGWCG	5 cut(s)	109, 112, 486, 510, 638
HpyAV	CCTTC	2 cut(s)	545, 724
HpyCH4III	ACNGT	1 cut(s)	286
HpyCH4IV	ACGT	3 cut(s)	98, 107, 149
HpyCH4V	TGCA	6 cut(s)	102, 185, 258, 369, 806, 859
HpyF10VI	GCNNNNNNNGC	4 cut(s)	59, 752, 797, 812
HpyF3I	CTNAG	2 cut(s)	249, 422
HpySE526I	ACGT	3 cut(s)	98, 107, 149
Hsp92I	GRCGYC	2 cut(s)	107, 481
Hsp92II	CATG	2 cut(s)	34, 195
HspAI	GCGC	2 cut(s)	427, 618
KspI	CCGCGG	1 cut(s)	690
Kzo9I	GATC	4 cut(s)	166, 171, 529, 610
LmnI	GCTCC	4 cut(s)	67, 342, 592, 809
Lsp1109I	GCAGC	4 cut(s)	46, 250, 800, 824
LweI	GCATC	1 cut(s)	787
MaeI	CTAG	1 cut(s)	314
MaeII	ACGT	3 cut(s)	98, 107, 149
MaeIII	GTNAC	2 cut(s)	212, 485
MalI	GATC	4 cut(s)	168, 173, 531, 612
MboI	GATC	4 cut(s)	166, 171, 529, 610
MboII	GAAGA	4 cut(s)	123, 547, 775, 878
MfeI	CAATTG	3 cut(s)	792, 828, 873
MhlI	GDGCHC	1 cut(s)	104
MluCI	AATT	9 cut(s)	376, 383, 396, 402, 623, 782, 792, 828, 873
MlyI	GAGTC	1 cut(s)	455
MmeI	TCCRAC	1 cut(s)	177
MnlI	CCTC	7 cut(s)	458, 465, 486, 513, 688, 691, 717
MslI	CAYNNNNRTG	2 cut(s)	97, 162
MspA1I	CMGCKG	1 cut(s)	689
MspI	CCGG	3 cut(s)	65, 418, 725
MspR9I	CCNGG	2 cut(s)	437, 584
MunI	CAATTG	3 cut(s)	792, 828, 873
Mva1269I	GAATGC	1 cut(s)	544
MvaI	CCWGG	2 cut(s)	437, 584
MvnI	CGCG	3 cut(s)	53, 218, 689
MwoI	GCNNNNNNNGC	4 cut(s)	59, 752, 797, 812
NdeII	GATC	4 cut(s)	166, 171, 529, 610
NlaIII	CATG	2 cut(s)	34, 195
NlaIV	GGNNCC	2 cut(s)	588, 664
NmuCI	GTSAC	1 cut(s)	485
NspV	TTCGAA	1 cut(s)	627
OliI	CACNNNNGTG	1 cut(s)	97
PaeR7I	CTCGAG	1 cut(s)	708
PcsI	WCGNNNNNNNCGW	4 cut(s)	104, 505, 633, 706
PctI	GAATGC	1 cut(s)	544
PfeI	GAWTC	3 cut(s)	496, 560, 694
PkrI	GCNGC	8 cut(s)	7, 61, 265, 470, 688, 691, 790, 814
PleI	GAGTC	1 cut(s)	455
PmaCI	CACGTG	1 cut(s)	99
PmlI	CACGTG	1 cut(s)	99
PpsI	GAGTC	1 cut(s)	455
Ppu21I	YACGTR	1 cut(s)	99
Psp6I	CCWGG	2 cut(s)	435, 582
PspCI	CACGTG	1 cut(s)	99
PspFI	CCCAGC	1 cut(s)	590
PspGI	CCWGG	2 cut(s)	435, 582
PspN4I	GGNNCC	2 cut(s)	588, 664
PspPI	GGNCC	3 cut(s)	466, 518, 719
PspXI	VCTCGAGB	1 cut(s)	708
PstI	CTGCAG	1 cut(s)	861
RsaI	GTAC	1 cut(s)	35
RsaNI	GTAC	1 cut(s)	34
RseI	CAYNNNNRTG	2 cut(s)	97, 162
SacII	CCGCGG	1 cut(s)	690
SalI	GTCGAC	1 cut(s)	632
SatI	GCNGC	8 cut(s)	6, 60, 264, 469, 687, 690, 789, 813
Sau3AI	GATC	4 cut(s)	166, 171, 529, 610
Sau96I	GGNCC	3 cut(s)	466, 518, 719
SchI	GAGTC	1 cut(s)	455
ScrFI	CCNGG	2 cut(s)	437, 584
SduI	GDGCHC	1 cut(s)	104
SfaNI	GCATC	1 cut(s)	787
SfcI	CTRYAG	3 cut(s)	714, 747, 857
Sfr274I	CTCGAG	1 cut(s)	708
Sfr303I	CCGCGG	1 cut(s)	690
SfuI	TTCGAA	1 cut(s)	627
SgrBI	CCGCGG	1 cut(s)	690
SinI	GGWCC	2 cut(s)	518, 719
SlaI	CTCGAG	1 cut(s)	708
SmiMI	CAYNNNNRTG	2 cut(s)	97, 162
SmlI	CTYRAG	1 cut(s)	708
SmoI	CTYRAG	1 cut(s)	708
Sse9I	AATT	9 cut(s)	376, 383, 396, 402, 623, 782, 792, 828, 873
SsiI	CCGC	8 cut(s)	51, 218, 469, 645, 660, 684, 687, 689
SspI	AATATT	1 cut(s)	128
SspMI	CTAG	1 cut(s)	314
StyD4I	CCNGG	2 cut(s)	435, 582
TaaI	ACNGT	1 cut(s)	286
TaiI	ACGT	3 cut(s)	101, 110, 152
TaqI	TCGA	8 cut(s)	134, 431, 499, 505, 627, 633, 700, 709
TasI	AATT	9 cut(s)	376, 383, 396, 402, 623, 782, 792, 828, 873
TatI	WGTACW	1 cut(s)	33
TauI	GCSGC	3 cut(s)	471, 689, 692
TfiI	GAWTC	3 cut(s)	496, 560, 694
TseFI	GTSAC	1 cut(s)	485
TseI	GCWGC	5 cut(s)	5, 59, 263, 788, 812
Tsp45I	GTSAC	1 cut(s)	485
TspDTI	ATGAA	2 cut(s)	158, 686
TspGWI	ACGGA	1 cut(s)	623
VneI	GTGCAC	1 cut(s)	100
VpaK11BI	GGWCC	2 cut(s)	518, 719
XapI	RAATTY	1 cut(s)	623
XhoI	CTCGAG	1 cut(s)	708
XmiI	GTMKAC	2 cut(s)	444, 633
XspI	CTAG	1 cut(s)	314
ZraI	GACGTC	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.