Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000954.1

Orthogroup ID

OG0006404

Physical Location & Seq

Genomic Coordinates Forward (+)

41378 .. 42797

Gene Structure 1420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000954.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

atggcaacagctgcgctgctcattgaagccaacccattaatgaaattgaagcaaaacaccctattacgcacttttcgtcctcttccatcaaaaccaatcgcattaacgtttagcaatcaacgttgctttgctcctagaatatttaagaaccctaaacctcgatgtttcttgcccgccgactctaaatgtcatccctctcaatctcagtccctcaatgttcttaaagataatcggccagcggcagcaaaccctaatttcacagtcgccgttaataaggtatgggaaaagtgtcacagggcattgagggaaccagcaatggctgccgtgctgtttggtttgttagtcatgtgcaaccccaactcagcagcgttggctgctccggtgggtcgggtgggtgtatcaaagttcactagagcggctgcacagcaatgctttgataaaattgtgttcagagagagggttagatatgacgaagagaccattgtcaatgtggacaatataaaaactcaaagcacaacaagtcagagatcaactaatgaatctcacaatgacaatgtagaggtaaacactttgaacttgagatctcggttgaatgtcattgcgagaatattttttagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1517

Protein Analysis

206

Amino Acids

23.11

Weight (kDa)

10.33

Isoelectric Point (pI)

46.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006404)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g07650 FvH4_4g23690
rosa_chinensis	RchiOBHm_Chr2g0174231
rosa_laevigata	RLG00000022227
rosa_multiflora	Rmu_sc0000954.1_g000010 Rmu_sc0003188.1_g000015 Rmu_sc0007150.1_g000008
rosa_roxburghii	Rroxscaffold_160G00433820 Rroxscaffold_2G00078310 Rroxscaffold_2G00078580 Rroxscaffold_4G00327970 Rroxscaffold_5G00372130
rosa_rugosa	Rorug02G0573200 Rorug02G0573600
rosa_samantha	Rh1DG179600 Rh2AG652200 Rh2AG652400 Rh2AG656000 Rh2BG663000 Rh2BG663200 Rh2BG667200 Rh2CG627600 Rh2CG628100 Rh2DG678100 Rh2DG678500 Rh4CG321100
rosa_wichuraiana	Rw2G053580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	416
AciI	CCGC	3 cut(s)	174, 239, 416
AclI	AACGTT	2 cut(s)	107, 121
AcoI	YGGCCR	1 cut(s)	233
AgsI	TTSAA	4 cut(s)	26, 49, 574, 592
AluBI	AGCT	1 cut(s)	11
AluI	AGCT	1 cut(s)	11
Alw26I	GTCTC	1 cut(s)	470
AoxI	GGCC	1 cut(s)	233
ApeKI	GCWGC	7 cut(s)	11, 16, 242, 320, 365, 374, 419
AseI	ATTAAT	1 cut(s)	38
AspLEI	GCGC	1 cut(s)	16
BbvI	GCAGC	6 cut(s)	3, 254, 307, 361, 377, 406
BccI	CCATC	1 cut(s)	94
BceAI	ACGGC	2 cut(s)	251, 308
BcoDI	GTCTC	1 cut(s)	470
BfaI	CTAG	2 cut(s)	135, 411
BglII	AGATCT	1 cut(s)	581
BisI	GCNGC	9 cut(s)	12, 17, 240, 243, 321, 366, 375, 417, 420
BlsI	GCNGC	9 cut(s)	13, 18, 241, 244, 322, 367, 376, 418, 421
BmiI	GGNNCC	1 cut(s)	309
BoxI	GACNNNNGTC	1 cut(s)	482
BpuEI	CTTGAG	1 cut(s)	598
BsaI	GGTCTC	1 cut(s)	470
BsaWI	WCCGGW	1 cut(s)	379
Bse3DI	GCAATG	3 cut(s)	321, 434, 597
BseGI	GGATG	1 cut(s)	190
BseMI	GCAATG	3 cut(s)	321, 434, 597
BseMII	CTCAG	2 cut(s)	218, 375
BseXI	GCAGC	6 cut(s)	3, 254, 307, 361, 377, 406
BsgI	GTGCAG	1 cut(s)	405
BshFI	GGCC	1 cut(s)	235
BsiSI	CCGG	1 cut(s)	380
BslFI	GGGAC	1 cut(s)	193
BsmAI	GTCTC	1 cut(s)	470
BsmFI	GGGAC	1 cut(s)	193
BsnI	GGCC	1 cut(s)	235
Bso31I	GGTCTC	1 cut(s)	470
Bsp143I	GATC	2 cut(s)	527, 581
BspACI	CCGC	3 cut(s)	174, 239, 416
BspANI	GGCC	1 cut(s)	235
BspCNI	CTCAG	2 cut(s)	217, 374
BspLI	GGNNCC	1 cut(s)	309
BspTNI	GGTCTC	1 cut(s)	470
BsrBI	CCGCTC	1 cut(s)	416
BsrDI	GCAATG	3 cut(s)	321, 434, 597
BssMI	GATC	2 cut(s)	527, 581
Bst4CI	ACNGT	1 cut(s)	262
Bst6I	CTCTTC	2 cut(s)	87, 468
BstAPI	GCANNNNNTGC	2 cut(s)	11, 320
BstC8I	GCNNGC	2 cut(s)	174, 237
BstDEI	CTNAG	2 cut(s)	204, 361
BstF5I	GGATG	1 cut(s)	190
BstHHI	GCGC	1 cut(s)	16
BstKTI	GATC	2 cut(s)	530, 584
BstMAI	GTCTC	1 cut(s)	470
BstMBI	GATC	2 cut(s)	527, 581
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 320, 371, 374
BstPAI	GACNNNNGTC	1 cut(s)	482
BstV1I	GCAGC	6 cut(s)	3, 254, 307, 361, 377, 406
BstX2I	RGATCY	1 cut(s)	581
BstYI	RGATCY	1 cut(s)	581
BsuRI	GGCC	1 cut(s)	235
BtsCI	GGATG	1 cut(s)	190
Cac8I	GCNNGC	2 cut(s)	174, 237
CfoI	GCGC	1 cut(s)	16
CviAII	CATG	1 cut(s)	346
CviJI	RGCY	6 cut(s)	11, 29, 235, 320, 374, 419
CviKI_1	RGCY	6 cut(s)	11, 29, 235, 320, 374, 419
DdeI	CTNAG	2 cut(s)	204, 361
DpnI	GATC	2 cut(s)	529, 583
DpnII	GATC	2 cut(s)	527, 581
EaeI	YGGCCR	1 cut(s)	233
Eam1104I	CTCTTC	2 cut(s)	87, 468
EarI	CTCTTC	2 cut(s)	87, 468
Eco31I	GGTCTC	1 cut(s)	470
FaeI	CATG	1 cut(s)	349
FaiI	YATR	4 cut(s)	280, 347, 468, 500
FaqI	GGGAC	1 cut(s)	193
FatI	CATG	1 cut(s)	345
FauI	CCCGC	1 cut(s)	181
Fnu4HI	GCNGC	9 cut(s)	12, 17, 240, 243, 321, 366, 375, 417, 420
FokI	GGATG	1 cut(s)	177
Fsp4HI	GCNGC	9 cut(s)	12, 17, 240, 243, 321, 366, 375, 417, 420
FspBI	CTAG	2 cut(s)	135, 411
GlaI	GCGC	1 cut(s)	15
GluI	GCNGC	9 cut(s)	12, 17, 240, 243, 321, 366, 375, 417, 420
HaeIII	GGCC	1 cut(s)	235
HapII	CCGG	1 cut(s)	380
HhaI	GCGC	1 cut(s)	16
Hin1II	CATG	1 cut(s)	349
Hin6I	GCGC	1 cut(s)	14
HinP1I	GCGC	1 cut(s)	14
HinfI	GANTC	2 cut(s)	179, 539
HpaII	CCGG	1 cut(s)	380
Hpy166II	GTNNAC	3 cut(s)	408, 493, 565
Hpy188I	TCNGA	2 cut(s)	452, 525
Hpy8I	GTNNAC	3 cut(s)	408, 493, 565
HpyCH4III	ACNGT	1 cut(s)	262
HpyCH4IV	ACGT	2 cut(s)	107, 121
HpyCH4V	TGCA	2 cut(s)	351, 422
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 320, 371, 374
HpyF3I	CTNAG	2 cut(s)	204, 361
HpySE526I	ACGT	2 cut(s)	107, 121
Hsp92II	CATG	1 cut(s)	349
HspAI	GCGC	1 cut(s)	14
Kzo9I	GATC	2 cut(s)	527, 581
LmnI	GCTCC	2 cut(s)	136, 382
LpnPI	CCDG	4 cut(s)	249, 280, 324, 393
Lsp1109I	GCAGC	6 cut(s)	3, 254, 307, 361, 377, 406
MaeI	CTAG	2 cut(s)	135, 411
MaeII	ACGT	2 cut(s)	107, 121
MaeIII	GTNAC	1 cut(s)	290
MalI	GATC	2 cut(s)	529, 583
MbiI	CCGCTC	1 cut(s)	416
MboI	GATC	2 cut(s)	527, 581
MboII	GAAGA	2 cut(s)	74, 485
MflI	RGATCY	1 cut(s)	581
MluCI	AATT	3 cut(s)	44, 253, 441
MlyI	GAGTC	1 cut(s)	173
MnlI	CCTC	7 cut(s)	90, 168, 205, 221, 297, 450, 553
MseI	TTAA	5 cut(s)	38, 104, 144, 222, 270
MslI	CAYNNNNRTG	1 cut(s)	427
MspA1I	CMGCKG	2 cut(s)	11, 239
MspI	CCGG	1 cut(s)	380
MwoI	GCNNNNNNNGC	4 cut(s)	11, 320, 371, 374
NdeII	GATC	2 cut(s)	527, 581
NlaIII	CATG	1 cut(s)	349
NlaIV	GGNNCC	1 cut(s)	309
NmuCI	GTSAC	1 cut(s)	290
PcsI	WCGNNNNNNNCGW	1 cut(s)	73
PfeI	GAWTC	1 cut(s)	539
PkrI	GCNGC	9 cut(s)	13, 18, 241, 244, 322, 367, 376, 418, 421
PleI	GAGTC	1 cut(s)	173
PpsI	GAGTC	1 cut(s)	173
PshAI	GACNNNNGTC	1 cut(s)	482
PshBI	ATTAAT	1 cut(s)	38
Psp1406I	AACGTT	2 cut(s)	107, 121
PspN4I	GGNNCC	1 cut(s)	309
PsuI	RGATCY	1 cut(s)	581
PvuII	CAGCTG	1 cut(s)	11
RseI	CAYNNNNRTG	1 cut(s)	427
SaqAI	TTAA	5 cut(s)	38, 104, 144, 222, 270
SatI	GCNGC	9 cut(s)	12, 17, 240, 243, 321, 366, 375, 417, 420
Sau3AI	GATC	2 cut(s)	527, 581
SchI	GAGTC	1 cut(s)	173
SetI	ASST	6 cut(s)	13, 110, 124, 160, 279, 564
SmiMI	CAYNNNNRTG	1 cut(s)	427
SmlI	CTYRAG	1 cut(s)	577
SmoI	CTYRAG	1 cut(s)	577
Sse9I	AATT	3 cut(s)	44, 253, 441
SsiI	CCGC	3 cut(s)	174, 239, 416
SspI	AATATT	2 cut(s)	141, 609
SspMI	CTAG	2 cut(s)	135, 411
TaaI	ACNGT	1 cut(s)	262
TaiI	ACGT	2 cut(s)	110, 124
TaqI	TCGA	1 cut(s)	160
TasI	AATT	3 cut(s)	44, 253, 441
TauI	GCSGC	2 cut(s)	242, 419
TfiI	GAWTC	1 cut(s)	539
Tru1I	TTAA	5 cut(s)	38, 104, 144, 222, 270
Tru9I	TTAA	5 cut(s)	38, 104, 144, 222, 270
TseFI	GTSAC	1 cut(s)	290
TseI	GCWGC	7 cut(s)	11, 16, 242, 320, 365, 374, 419
Tsp45I	GTSAC	1 cut(s)	290
TspDTI	ATGAA	2 cut(s)	56, 552
VspI	ATTAAT	1 cut(s)	38
XcmI	CCANNNNNNNNNTGG	1 cut(s)	487
XspI	CTAG	2 cut(s)	135, 411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.