Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0006404

Physical Location & Seq

Genomic Coordinates Reverse (-)

87721657 .. 87722869

Gene Structure 1213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG663200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGCTGCCTTGCTGTTGGGTTTGTTAGTCATGTACAACCCCAACTCATCCGCGTTGGCTGCTCCGGTGGGTCGGGTCGGTGGAAGTTTGACACCCACGTGCACGACGTCGCACCATCCATCTAAATATTCTTCGACCACAATGAAAACGTCCGACCACTACGATGATCCGATCTGGGAGTTTGCAGTCTCATGGTTCACTCTTTTCTGCTGTTACGCGGGATTTTTTGCGTGGGTTTTGCCTATCTCTAAGTTTTGCAAGGCTGCCTTGTTTATTTTCGGGACAGTTTTATTCGCTATTTGGGTTCACTTTCTAGGTCAAACAAGTGTTGTCAAGCTCCAGCTTCAGGTGGTTATACCAAAGTTCTCTAGAGCAGCGGCTCAGCAATTCTTTGATCAACTTGTGTTCAGAGAGAGGGTTAGATATGATGAAGGAGACCATTGTCAATGTGGACAATATAAAAACTCAAAGCACACCAAGTCAGAGATCGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

164

Amino Acids

18.45

Weight (kDa)

8.54

Isoelectric Point (pI)

30.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006404)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g07650 FvH4_4g23690
rosa_chinensis	RchiOBHm_Chr2g0174231
rosa_laevigata	RLG00000022227
rosa_multiflora	Rmu_sc0000954.1_g000010 Rmu_sc0003188.1_g000015 Rmu_sc0007150.1_g000008
rosa_roxburghii	Rroxscaffold_160G00433820 Rroxscaffold_2G00078310 Rroxscaffold_2G00078580 Rroxscaffold_4G00327970 Rroxscaffold_5G00372130
rosa_rugosa	Rorug02G0573200 Rorug02G0573600
rosa_samantha	Rh1DG179600 Rh2AG652200 Rh2AG652400 Rh2AG656000 Rh2BG663000 Rh2BG663200 Rh2BG667200 Rh2CG627600 Rh2CG628100 Rh2DG678100 Rh2DG678500 Rh4CG321100
rosa_wichuraiana	Rw2G053580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	110
AccII	CGCG	2 cut(s)	53, 218
AciI	CCGC	3 cut(s)	51, 218, 377
AclWI	GGATC	1 cut(s)	161
AcuI	CTGAAG	1 cut(s)	329
AcvI	CACGTG	1 cut(s)	99
AcyI	GRCGYC	1 cut(s)	107
AfaI	GTAC	1 cut(s)	35
AfiI	CCNNNNNNNGG	1 cut(s)	346
AleI	CACNNNNGTG	1 cut(s)	97
AluBI	AGCT	2 cut(s)	337, 343
AluI	AGCT	2 cut(s)	337, 343
Alw21I	GWGCWC	1 cut(s)	104
Alw26I	GTCTC	2 cut(s)	193, 429
Alw44I	GTGCAC	1 cut(s)	100
AlwI	GGATC	1 cut(s)	161
ApaLI	GTGCAC	1 cut(s)	100
ApeKI	GCWGC	4 cut(s)	5, 59, 263, 374
BaeGI	GKGCMC	1 cut(s)	104
BbrPI	CACGTG	1 cut(s)	99
Bbv12I	GWGCWC	1 cut(s)	104
BbvI	GCAGC	3 cut(s)	46, 250, 386
BccI	CCATC	2 cut(s)	123, 127
BclI	TGATCA	1 cut(s)	394
BcoDI	GTCTC	2 cut(s)	193, 429
BfaI	CTAG	2 cut(s)	314, 369
BisI	GCNGC	5 cut(s)	6, 60, 264, 375, 378
BlpI	GCTNAGC	1 cut(s)	381
BlsI	GCNGC	5 cut(s)	7, 61, 265, 376, 379
BoxI	GACNNNNGTC	1 cut(s)	441
BpmI	CTGGAG	1 cut(s)	323
Bpu1102I	GCTNAGC	1 cut(s)	381
BsaAI	YACGTR	1 cut(s)	99
BsaHI	GRCGYC	1 cut(s)	107
BsaI	GGTCTC	1 cut(s)	429
BsaWI	WCCGGW	1 cut(s)	64
Bsc4I	CCNNNNNNNGG	1 cut(s)	346
BseGI	GGATG	2 cut(s)	47, 115
BseLI	CCNNNNNNNGG	1 cut(s)	346
BseMII	CTCAG	1 cut(s)	395
BseSI	GKGCMC	1 cut(s)	104
BseXI	GCAGC	3 cut(s)	46, 250, 386
Bsh1236I	CGCG	2 cut(s)	53, 218
BsiHKAI	GWGCWC	1 cut(s)	104
BsiSI	CCGG	1 cut(s)	65
BslFI	GGGAC	1 cut(s)	295
BslI	CCNNNNNNNGG	1 cut(s)	346
BsmAI	GTCTC	2 cut(s)	193, 429
BsmFI	GGGAC	1 cut(s)	295
Bso31I	GGTCTC	1 cut(s)	429
Bsp1286I	GDGCHC	1 cut(s)	104
Bsp1407I	TGTACA	1 cut(s)	33
Bsp143I	GATC	4 cut(s)	166, 171, 394, 486
Bsp1720I	GCTNAGC	1 cut(s)	381
BspACI	CCGC	3 cut(s)	51, 218, 377
BspCNI	CTCAG	1 cut(s)	394
BspFNI	CGCG	2 cut(s)	53, 218
BspPI	GGATC	1 cut(s)	161
BspTNI	GGTCTC	1 cut(s)	429
BsrGI	TGTACA	1 cut(s)	33
BssMI	GATC	4 cut(s)	166, 171, 394, 486
BssNI	GRCGYC	1 cut(s)	107
Bst4CI	ACNGT	1 cut(s)	286
BstACI	GRCGYC	1 cut(s)	107
BstAUI	TGTACA	1 cut(s)	33
BstBAI	YACGTR	1 cut(s)	99
BstDEI	CTNAG	2 cut(s)	249, 381
BstF5I	GGATG	2 cut(s)	47, 115
BstFNI	CGCG	2 cut(s)	53, 218
BstKTI	GATC	4 cut(s)	169, 174, 397, 489
BstMAI	GTCTC	2 cut(s)	193, 429
BstMBI	GATC	4 cut(s)	166, 171, 394, 486
BstMWI	GCNNNNNNNGC	1 cut(s)	59
BstPAI	GACNNNNGTC	1 cut(s)	441
BstSLI	GKGCMC	1 cut(s)	104
BstUI	CGCG	2 cut(s)	53, 218
BstV1I	GCAGC	3 cut(s)	46, 250, 386
BtsCI	GGATG	2 cut(s)	47, 115
Csp6I	GTAC	1 cut(s)	34
CviAII	CATG	2 cut(s)	31, 192
CviJI	RGCY	6 cut(s)	5, 59, 263, 337, 343, 380
CviKI_1	RGCY	6 cut(s)	5, 59, 263, 337, 343, 380
CviQI	GTAC	1 cut(s)	34
DdeI	CTNAG	2 cut(s)	249, 381
DpnI	GATC	4 cut(s)	168, 173, 396, 488
DpnII	GATC	4 cut(s)	166, 171, 394, 486
Eco31I	GGTCTC	1 cut(s)	429
Eco57I	CTGAAG	1 cut(s)	329
Eco72I	CACGTG	1 cut(s)	99
FaeI	CATG	2 cut(s)	34, 195
FaiI	YATR	5 cut(s)	32, 193, 356, 426, 459
FalI	AAGNNNNNCTT	2 cut(s)	251, 283
FaqI	GGGAC	1 cut(s)	295
FatI	CATG	2 cut(s)	30, 191
FauI	CCCGC	1 cut(s)	211
FbaI	TGATCA	1 cut(s)	394
Fnu4HI	GCNGC	5 cut(s)	6, 60, 264, 375, 378
FokI	GGATG	2 cut(s)	34, 102
Fsp4HI	GCNGC	5 cut(s)	6, 60, 264, 375, 378
FspBI	CTAG	2 cut(s)	314, 369
GluI	GCNGC	5 cut(s)	6, 60, 264, 375, 378
GsuI	CTGGAG	1 cut(s)	323
HapII	CCGG	1 cut(s)	65
Hin1I	GRCGYC	1 cut(s)	107
Hin1II	CATG	2 cut(s)	34, 195
HpaII	CCGG	1 cut(s)	65
Hpy166II	GTNNAC	4 cut(s)	102, 198, 307, 452
Hpy188I	TCNGA	4 cut(s)	154, 171, 410, 484
Hpy188III	TCNNGA	2 cut(s)	280, 369
Hpy8I	GTNNAC	4 cut(s)	102, 198, 307, 452
Hpy99I	CGWCG	2 cut(s)	109, 112
HpyAV	CCTTC	1 cut(s)	425
HpyCH4III	ACNGT	1 cut(s)	286
HpyCH4IV	ACGT	3 cut(s)	98, 107, 149
HpyCH4V	TGCA	3 cut(s)	102, 185, 258
HpyF10VI	GCNNNNNNNGC	1 cut(s)	59
HpyF3I	CTNAG	2 cut(s)	249, 381
HpySE526I	ACGT	3 cut(s)	98, 107, 149
Hsp92I	GRCGYC	1 cut(s)	107
Hsp92II	CATG	2 cut(s)	34, 195
Ksp22I	TGATCA	1 cut(s)	394
Kzo9I	GATC	4 cut(s)	166, 171, 394, 486
LmnI	GCTCC	2 cut(s)	67, 342
LpnPI	CCDG	4 cut(s)	78, 160, 332, 353
Lsp1109I	GCAGC	3 cut(s)	46, 250, 386
MaeI	CTAG	2 cut(s)	314, 369
MaeII	ACGT	3 cut(s)	98, 107, 149
MaeIII	GTNAC	1 cut(s)	212
MalI	GATC	4 cut(s)	168, 173, 396, 488
MboI	GATC	4 cut(s)	166, 171, 394, 486
MboII	GAAGA	1 cut(s)	123
MhlI	GDGCHC	1 cut(s)	104
MluCI	AATT	1 cut(s)	386
MmeI	TCCRAC	1 cut(s)	177
MnlI	CCTC	1 cut(s)	408
MslI	CAYNNNNRTG	2 cut(s)	97, 162
MspA1I	CMGCKG	1 cut(s)	377
MspI	CCGG	1 cut(s)	65
MvnI	CGCG	2 cut(s)	53, 218
MwoI	GCNNNNNNNGC	1 cut(s)	59
NdeII	GATC	4 cut(s)	166, 171, 394, 486
NlaIII	CATG	2 cut(s)	34, 195
OliI	CACNNNNGTG	1 cut(s)	97
PcsI	WCGNNNNNNNCGW	1 cut(s)	104
PkrI	GCNGC	5 cut(s)	7, 61, 265, 376, 379
PmaCI	CACGTG	1 cut(s)	99
PmlI	CACGTG	1 cut(s)	99
Ppu21I	YACGTR	1 cut(s)	99
PshAI	GACNNNNGTC	1 cut(s)	441
PspCI	CACGTG	1 cut(s)	99
RsaI	GTAC	1 cut(s)	35
RsaNI	GTAC	1 cut(s)	34
RseI	CAYNNNNRTG	2 cut(s)	97, 162
SatI	GCNGC	5 cut(s)	6, 60, 264, 375, 378
Sau3AI	GATC	4 cut(s)	166, 171, 394, 486
SduI	GDGCHC	1 cut(s)	104
SetI	ASST	7 cut(s)	101, 110, 152, 319, 339, 345, 351
SmiMI	CAYNNNNRTG	2 cut(s)	97, 162
Sse9I	AATT	1 cut(s)	386
SsiI	CCGC	3 cut(s)	51, 218, 377
SspI	AATATT	1 cut(s)	128
SspMI	CTAG	2 cut(s)	314, 369
TaaI	ACNGT	1 cut(s)	286
TaiI	ACGT	3 cut(s)	101, 110, 152
TaqI	TCGA	2 cut(s)	134, 489
TasI	AATT	1 cut(s)	386
TatI	WGTACW	1 cut(s)	33
TauI	GCSGC	1 cut(s)	380
TseI	GCWGC	4 cut(s)	5, 59, 263, 374
TspDTI	ATGAA	2 cut(s)	158, 444
VneI	GTGCAC	1 cut(s)	100
XbaI	TCTAGA	1 cut(s)	368
XcmI	CCANNNNNNNNNTGG	1 cut(s)	446
XspI	CTAG	2 cut(s)	314, 369
ZraI	GACGTC	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.