Rroxscaffold_160G00433820

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000160
OG0006404
Physical Location & Seq
Forward (+)
307650 .. 309591
1942 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_160G00433820.1

Sequence Viewer

Length: 1062 bp
ATGGCAACAGCTGCGCTGCTCATTGAAGCCAACCCATTAATGAAATTGAAGCAAAACACCCTATTACGCACTTTTCGTCCTCTTCCATCAAAACCAATCGCATTAACGTTTAGCAATCAACGTTGCTTTGCTCCTAGAATATTTAAGAACCCTAAACCTCAATGTTTCTTGCCCGCCGACTCTAAATGTCATCCCTCTCAGTCTCAGTCCCTCAATGTTCTTAAAGATAATCGGCCAGCGGCAGCAAACCCTAATTTCACAGTCGCCGTTAATAAGGTATGGGAAAAGTGTCACAAGGCATTGAGGGAACCAGCAATGGCTGCCGTGCTGTTTGGTTTGTTAGTCATGTGCAACCCCAACTCAGCAGCGTTGGCTGCTCCGGTGGGTCGGGTCGGTGGAAGCTTGACACCCACGCGTACGACGTTGCACCATCCATCTAAATATTCTTCGACCACAATCACAACGTCCGACCACTACGATGATCCGATCTGGGAAATTGCATTCTATTTTTTCTTTATTTTATGCTTTCTCTGGGGATTGTTTGCGTTGCTTTCGCCTTACCCCAAGTTTTACACGGCTGCTTTGTTTATTTTCGGGACAGTTTTCACCGCTATTTGGGTTCACTCTCTTAGGTCAAACAAGTGTTGTCAAGCTCCAGCTTCAGATACAGCTGTAGCTCTATTTCGGCAACCTGATTATTGCATTTCCGGTTACTCATGTGTGGGTGTACCAAAGTTCACTAGAGCGGCTGCACAGCAATGCTTTGATAAAATTGTGTTCAGAGAGAGGGTTAGATATGACGAAGAGACCATTGTCAATGTGGACAATATAAAAACTCAAAGCACAACAAGTCAGAGATCAACTACTGAATCTCACAATGACAATGTAGAGGTTACAATTTTACTTGCTGTTGATGGAAAGTCTAAGTTGCCCACTATCATTGACAGCAGTGATTTGAAGAAAGTGATGGAAGAGCTTGCATCCATTGATCCCAGCAGACTACTTTTAGGAGTAGAGGTACTGTGGACTCCTCAGTTCTCTTCACATGCGGCAAGCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

353

Amino Acids

39.2

Weight (kDa)

9.07

Isoelectric Point (pI)

47.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1517 PF07466 216 - 347 3.2e-28 Protein of unknown function (DUF1517)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 746
AccII CGCG 1 cut(s) 415
AciI CCGC 5 cut(s) 174, 239, 609, 746, 1049
AclI AACGTT 2 cut(s) 107, 121
AclWI GGATC 2 cut(s) 476, 983
AcoI YGGCCR 1 cut(s) 233
AcuI CTGAAG 1 cut(s) 645
AfaI GTAC 3 cut(s) 418, 729, 1020
AfiI CCNNNNNNNGG 1 cut(s) 615
AflIII ACRYGT 1 cut(s) 413
AgsI TTSAA 3 cut(s) 26, 49, 958
AluBI AGCT 7 cut(s) 11, 402, 653, 659, 671, 677, 976
AluI AGCT 7 cut(s) 11, 402, 653, 659, 671, 677, 976
Alw26I GTCTC 2 cut(s) 207, 800
AlwI GGATC 2 cut(s) 476, 983
AoxI GGCC 1 cut(s) 233
ApeKI GCWGC 8 cut(s) 11, 16, 242, 320, 365, 374, 578, 749
AseI ATTAAT 1 cut(s) 38
AspLEI GCGC 1 cut(s) 16
AsuHPI GGTGA 1 cut(s) 598
BaeI ACNNNNGTAYC 2 cut(s) 657, 690
BbvI GCAGC 7 cut(s) 3, 254, 307, 361, 377, 565, 736
BccI CCATC 5 cut(s) 94, 438, 442, 908, 961
BceAI ACGGC 3 cut(s) 251, 308, 591
BcoDI GTCTC 2 cut(s) 207, 800
BfaI CTAG 2 cut(s) 135, 741
BfmI CTRYAG 1 cut(s) 672
BmiI GGNNCC 1 cut(s) 309
BmsI GCATC 1 cut(s) 989
BoxI GACNNNNGTC 1 cut(s) 812
BpmI CTGGAG 1 cut(s) 639
BsaI GGTCTC 1 cut(s) 800
BsaWI WCCGGW 2 cut(s) 379, 707
BsaXI ACNNNNNCTCC 2 cut(s) 1002, 1032
Bsc4I CCNNNNNNNGG 1 cut(s) 615
Bse3DI GCAATG 2 cut(s) 321, 764
BseGI GGATG 3 cut(s) 190, 430, 980
BseLI CCNNNNNNNGG 1 cut(s) 615
BseMI GCAATG 2 cut(s) 321, 764
BseMII CTCAG 4 cut(s) 212, 218, 375, 1046
BseRI GAGGAG 1 cut(s) 1020
BseXI GCAGC 7 cut(s) 3, 254, 307, 361, 377, 565, 736
BseYI CCCAGC 1 cut(s) 992
BsgI GTGCAG 1 cut(s) 735
Bsh1236I CGCG 1 cut(s) 415
BshFI GGCC 1 cut(s) 235
BsiSI CCGG 2 cut(s) 380, 708
BsiWI CGTACG 1 cut(s) 416
BslFI GGGAC 2 cut(s) 193, 610
BslI CCNNNNNNNGG 1 cut(s) 615
BsmAI GTCTC 2 cut(s) 207, 800
BsmFI GGGAC 2 cut(s) 193, 610
BsmI GAATGC 1 cut(s) 500
BsnI GGCC 1 cut(s) 235
Bso31I GGTCTC 1 cut(s) 800
Bsp143I GATC 4 cut(s) 481, 486, 857, 988
BspACI CCGC 5 cut(s) 174, 239, 609, 746, 1049
BspANI GGCC 1 cut(s) 235
BspCNI CTCAG 4 cut(s) 211, 217, 374, 1045
BspFNI CGCG 1 cut(s) 415
BspLI GGNNCC 1 cut(s) 309
BspPI GGATC 2 cut(s) 476, 983
BspQI GCTCTTC 1 cut(s) 966
BspTNI GGTCTC 1 cut(s) 800
BsrBI CCGCTC 1 cut(s) 746
BsrDI GCAATG 2 cut(s) 321, 764
BssMI GATC 4 cut(s) 481, 486, 857, 988
Bst4CI ACNGT 3 cut(s) 262, 601, 1023
Bst6I CTCTTC 4 cut(s) 87, 798, 966, 1045
BstAPI GCANNNNNTGC 2 cut(s) 11, 320
BstC8I GCNNGC 4 cut(s) 174, 237, 978, 1054
BstDEI CTNAG 6 cut(s) 198, 204, 361, 629, 924, 1032
BstF5I GGATG 3 cut(s) 190, 430, 980
BstFNI CGCG 1 cut(s) 415
BstHHI GCGC 1 cut(s) 16
BstKTI GATC 4 cut(s) 484, 489, 860, 991
BstMAI GTCTC 2 cut(s) 207, 800
BstMBI GATC 4 cut(s) 481, 486, 857, 988
BstMWI GCNNNNNNNGC 4 cut(s) 11, 320, 371, 374
BstNSI RCATGY 1 cut(s) 1049
BstPAI GACNNNNGTC 1 cut(s) 812
BstSFI CTRYAG 1 cut(s) 672
BstUI CGCG 1 cut(s) 415
BstV1I GCAGC 7 cut(s) 3, 254, 307, 361, 377, 565, 736
BsuRI GGCC 1 cut(s) 235
BtsCI GGATG 3 cut(s) 190, 430, 980
BtsI GCAGTG 1 cut(s) 955
BtsIMutI CAGTG 1 cut(s) 955
Cac8I GCNNGC 4 cut(s) 174, 237, 978, 1054
CfoI GCGC 1 cut(s) 16
Csp6I GTAC 3 cut(s) 417, 728, 1019
CspCI CAANNNNNGTGG 2 cut(s) 922, 957
CviAII CATG 3 cut(s) 346, 717, 1046
CviQI GTAC 3 cut(s) 417, 728, 1019
DdeI CTNAG 6 cut(s) 198, 204, 361, 629, 924, 1032
DpnI GATC 4 cut(s) 483, 488, 859, 990
DpnII GATC 4 cut(s) 481, 486, 857, 988
EaeI YGGCCR 1 cut(s) 233
Eam1104I CTCTTC 4 cut(s) 87, 798, 966, 1045
EarI CTCTTC 4 cut(s) 87, 798, 966, 1045
Eco31I GGTCTC 1 cut(s) 800
Eco57I CTGAAG 1 cut(s) 645
FaeI CATG 3 cut(s) 349, 720, 1049
FaiI YATR 7 cut(s) 280, 347, 523, 718, 798, 830, 1047
FaqI GGGAC 2 cut(s) 193, 610
FatI CATG 3 cut(s) 345, 716, 1045
FauI CCCGC 1 cut(s) 181
FokI GGATG 3 cut(s) 177, 417, 967
FspBI CTAG 2 cut(s) 135, 741
GlaI GCGC 1 cut(s) 15
GsaI CCCAGC 1 cut(s) 996
GsuI CTGGAG 1 cut(s) 639
HaeIII GGCC 1 cut(s) 235
HapII CCGG 2 cut(s) 380, 708
HhaI GCGC 1 cut(s) 16
Hin1II CATG 3 cut(s) 349, 720, 1049
Hin6I GCGC 1 cut(s) 14
HinP1I GCGC 1 cut(s) 14
HindIII AAGCTT 1 cut(s) 400
HinfI GANTC 3 cut(s) 179, 869, 1027
HpaII CCGG 2 cut(s) 380, 708
HphI GGTGA 1 cut(s) 598
Hpy166II GTNNAC 5 cut(s) 622, 728, 738, 823, 1026
Hpy188I TCNGA 5 cut(s) 469, 486, 664, 782, 855
Hpy188III TCNNGA 1 cut(s) 595
Hpy8I GTNNAC 5 cut(s) 622, 728, 738, 823, 1026
Hpy99I CGWCG 1 cut(s) 424
HpyCH4III ACNGT 3 cut(s) 262, 601, 1023
HpyCH4IV ACGT 4 cut(s) 107, 121, 422, 464
HpyCH4V TGCA 6 cut(s) 351, 427, 500, 702, 752, 980
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 320, 371, 374
HpyF3I CTNAG 6 cut(s) 198, 204, 361, 629, 924, 1032
HpySE526I ACGT 4 cut(s) 107, 121, 422, 464
Hsp92II CATG 3 cut(s) 349, 720, 1049
HspAI GCGC 1 cut(s) 14
Kzo9I GATC 4 cut(s) 481, 486, 857, 988
LguI GCTCTTC 1 cut(s) 966
LmnI GCTCC 3 cut(s) 136, 382, 658
LpnPI CCDG 9 cut(s) 249, 324, 393, 475, 517, 669, 705, 721, 1006
Lsp1109I GCAGC 7 cut(s) 3, 254, 307, 361, 377, 565, 736
LweI GCATC 1 cut(s) 989
MaeI CTAG 2 cut(s) 135, 741
MaeII ACGT 4 cut(s) 107, 121, 422, 464
MaeIII GTNAC 3 cut(s) 290, 710, 892
MalI GATC 4 cut(s) 483, 488, 859, 990
MbiI CCGCTC 1 cut(s) 746
MboI GATC 4 cut(s) 481, 486, 857, 988
MboII GAAGA 6 cut(s) 74, 438, 815, 970, 983, 1032
MluCI AATT 5 cut(s) 44, 253, 495, 771, 897
MluI ACGCGT 1 cut(s) 413
MlyI GAGTC 2 cut(s) 173, 1021
MmeI TCCRAC 1 cut(s) 492
MnlI CCTC 9 cut(s) 90, 168, 205, 221, 297, 780, 883, 1009, 1041
MseI TTAA 5 cut(s) 38, 104, 144, 222, 270
MslI CAYNNNNRTG 2 cut(s) 477, 757
MspA1I CMGCKG 3 cut(s) 11, 239, 671
MspI CCGG 2 cut(s) 380, 708
Mva1269I GAATGC 1 cut(s) 500
MvnI CGCG 1 cut(s) 415
MwoI GCNNNNNNNGC 4 cut(s) 11, 320, 371, 374
NdeII GATC 4 cut(s) 481, 486, 857, 988
NlaIII CATG 3 cut(s) 349, 720, 1049
NlaIV GGNNCC 1 cut(s) 309
NmuCI GTSAC 1 cut(s) 290
NspI RCATGY 1 cut(s) 1049
PciSI GCTCTTC 1 cut(s) 966
PcsI WCGNNNNNNNCGW 2 cut(s) 73, 419
PctI GAATGC 1 cut(s) 500
PfeI GAWTC 1 cut(s) 869
Pfl23II CGTACG 1 cut(s) 416
PleI GAGTC 2 cut(s) 173, 1021
PpsI GAGTC 2 cut(s) 173, 1021
PshAI GACNNNNGTC 1 cut(s) 812
PshBI ATTAAT 1 cut(s) 38
Psp1406I AACGTT 2 cut(s) 107, 121
PspFI CCCAGC 1 cut(s) 992
PspLI CGTACG 1 cut(s) 416
PspN4I GGNNCC 1 cut(s) 309
PvuII CAGCTG 2 cut(s) 11, 671
RsaI GTAC 3 cut(s) 418, 729, 1020
RsaNI GTAC 3 cut(s) 417, 728, 1019
RseI CAYNNNNRTG 2 cut(s) 477, 757
SapI GCTCTTC 1 cut(s) 966
SaqAI TTAA 5 cut(s) 38, 104, 144, 222, 270
Sau3AI GATC 4 cut(s) 481, 486, 857, 988
SchI GAGTC 2 cut(s) 173, 1021
SfaNI GCATC 1 cut(s) 989
SfcI CTRYAG 1 cut(s) 672
SmiMI CAYNNNNRTG 2 cut(s) 477, 757
Sse9I AATT 5 cut(s) 44, 253, 495, 771, 897
SsiI CCGC 5 cut(s) 174, 239, 609, 746, 1049
SspI AATATT 2 cut(s) 141, 443
SspMI CTAG 2 cut(s) 135, 741
TaaI ACNGT 3 cut(s) 262, 601, 1023
TaiI ACGT 4 cut(s) 110, 124, 425, 467
TaqI TCGA 1 cut(s) 449
TasI AATT 5 cut(s) 44, 253, 495, 771, 897
TauI GCSGC 3 cut(s) 242, 749, 1052
TfiI GAWTC 1 cut(s) 869
Tru1I TTAA 5 cut(s) 38, 104, 144, 222, 270
Tru9I TTAA 5 cut(s) 38, 104, 144, 222, 270
TscAI CASTG 1 cut(s) 955
TseFI GTSAC 1 cut(s) 290
TseI GCWGC 8 cut(s) 11, 16, 242, 320, 365, 374, 578, 749
Tsp45I GTSAC 1 cut(s) 290
TspDTI ATGAA 1 cut(s) 56
TspRI CASTG 1 cut(s) 955
VspI ATTAAT 1 cut(s) 38
XceI RCATGY 1 cut(s) 1049
XcmI CCANNNNNNNNNTGG 1 cut(s) 817
XspI CTAG 2 cut(s) 135, 741
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.