Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0006404

Physical Location & Seq

Genomic Coordinates Forward (+)

87968384 .. 87970004

Gene Structure 1621 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG667200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGCTGCCGTGCTGTTTGTTTTCACCGCTATTTGGGTTCACTCTCTAGGTCAAACAAGTGTTGTCAAGCTCCAGCTTCAGGTTACTTTATCGAACACGGGACGAGCAGTGCAAACGGATCTTAATCGGATCGCTGAAACTGCAGATACCTCTACACGTACGGGTTTGAGGTATGTTTTGAGAGGTGAGTTAAATGAAAAAGGCCTTATTTTTGGTGATAACAATATTTTCCTTTTAGGTCATCTGATTTCATTTTCACCAAATCTTTTGGTTATAGATACAGCGGTAGCTCTATTTCGGCAACCTGATTATTGCATTTCCGGTTACTCATGTGTGGGTGTATCAAAGTTCACTAGAGCGGCTGCACAGCAATGCTTTGATAAAATTGTGTTCAGAGAGAGGGTTAGATATGACGAAGAGACCATTGTCAATGTGGACAATATAAAAACTCAAAGCACAACAAGTCAGAGATCAACTAATGAATCTCACAATGACAATGTAGAGGTTACAATTTTACTTGCTGTTGATGGAAAGTCTAAGTTGCCCACTATCATTGACATCAGTGATTTGAAGAAAGTGATGGAAGAGCTTGCATCCATTGATCCCAGCAGACTACTTTTAGGAATAGAGGTACTGTGGACTCCTCAGTTCTCTTCACATGCGGCAAGCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1517

Protein Analysis

224

Amino Acids

24.81

Weight (kDa)

6.09

Isoelectric Point (pI)

28.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1517	PF07466	24 - 61	1.3e-07	Protein of unknown function (DUF1517)
DUF1517	PF07466	90 - 218	3.5e-28	Protein of unknown function (DUF1517)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006404)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g07650 FvH4_4g23690
rosa_chinensis	RchiOBHm_Chr2g0174231
rosa_laevigata	RLG00000022227
rosa_multiflora	Rmu_sc0000954.1_g000010 Rmu_sc0003188.1_g000015 Rmu_sc0007150.1_g000008
rosa_roxburghii	Rroxscaffold_160G00433820 Rroxscaffold_2G00078310 Rroxscaffold_2G00078580 Rroxscaffold_4G00327970 Rroxscaffold_5G00372130
rosa_rugosa	Rorug02G0573200 Rorug02G0573600
rosa_samantha	Rh1DG179600 Rh2AG652200 Rh2AG652400 Rh2AG656000 Rh2BG663000 Rh2BG663200 Rh2BG667200 Rh2CG627600 Rh2CG628100 Rh2DG678100 Rh2DG678500 Rh4CG321100
rosa_wichuraiana	Rw2G053580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	359
AciI	CCGC	4 cut(s)	27, 284, 359, 662
AclWI	GGATC	3 cut(s)	126, 137, 596
AcuI	CTGAAG	1 cut(s)	62
AfaI	GTAC	2 cut(s)	160, 633
AfiI	CCNNNNNNNGG	2 cut(s)	33, 79
AflIII	ACRYGT	1 cut(s)	155
AgsI	TTSAA	1 cut(s)	571
AluBI	AGCT	4 cut(s)	70, 76, 290, 589
AluI	AGCT	4 cut(s)	70, 76, 290, 589
Alw26I	GTCTC	1 cut(s)	413
AlwI	GGATC	3 cut(s)	126, 137, 596
AoxI	GGCC	1 cut(s)	202
ApeKI	GCWGC	2 cut(s)	5, 362
AsuHPI	GGTGA	4 cut(s)	16, 197, 227, 249
BaeI	ACNNNNGTAYC	2 cut(s)	270, 303
BbvI	GCAGC	1 cut(s)	349
BccI	CCATC	2 cut(s)	521, 574
BcoDI	GTCTC	1 cut(s)	413
BfaI	CTAG	2 cut(s)	47, 354
BfmI	CTRYAG	1 cut(s)	141
BisI	GCNGC	4 cut(s)	6, 360, 363, 663
BlsI	GCNGC	4 cut(s)	7, 361, 364, 664
BmsI	GCATC	1 cut(s)	602
BoxI	GACNNNNGTC	1 cut(s)	425
BpmI	CTGGAG	1 cut(s)	56
BsaAI	YACGTR	1 cut(s)	158
BsaBI	GATNNNNATC	1 cut(s)	123
BsaI	GGTCTC	1 cut(s)	413
BsaWI	WCCGGW	1 cut(s)	320
Bsc4I	CCNNNNNNNGG	2 cut(s)	33, 79
Bse3DI	GCAATG	1 cut(s)	377
Bse8I	GATNNNNATC	1 cut(s)	123
BseGI	GGATG	1 cut(s)	593
BseJI	GATNNNNATC	1 cut(s)	123
BseLI	CCNNNNNNNGG	2 cut(s)	33, 79
BseMI	GCAATG	1 cut(s)	377
BseMII	CTCAG	1 cut(s)	659
BseRI	GAGGAG	1 cut(s)	633
BseXI	GCAGC	1 cut(s)	349
BseYI	CCCAGC	1 cut(s)	605
BsgI	GTGCAG	1 cut(s)	348
BshFI	GGCC	1 cut(s)	204
BsiSI	CCGG	1 cut(s)	321
BsiWI	CGTACG	1 cut(s)	158
BslFI	GGGAC	1 cut(s)	114
BslI	CCNNNNNNNGG	2 cut(s)	33, 79
BsmAI	GTCTC	1 cut(s)	413
BsmFI	GGGAC	1 cut(s)	114
BsnI	GGCC	1 cut(s)	204
Bso31I	GGTCTC	1 cut(s)	413
Bsp143I	GATC	4 cut(s)	118, 129, 470, 601
BspACI	CCGC	4 cut(s)	27, 284, 359, 662
BspANI	GGCC	1 cut(s)	204
BspCNI	CTCAG	1 cut(s)	658
BspMAI	CTGCAG	1 cut(s)	145
BspPI	GGATC	3 cut(s)	126, 137, 596
BspQI	GCTCTTC	1 cut(s)	579
BspTNI	GGTCTC	1 cut(s)	413
BsrBI	CCGCTC	1 cut(s)	359
BsrDI	GCAATG	1 cut(s)	377
BssMI	GATC	4 cut(s)	118, 129, 470, 601
Bst4CI	ACNGT	1 cut(s)	636
Bst6I	CTCTTC	3 cut(s)	411, 579, 658
BstBAI	YACGTR	1 cut(s)	158
BstC8I	GCNNGC	2 cut(s)	591, 667
BstDEI	CTNAG	2 cut(s)	537, 645
BstF5I	GGATG	1 cut(s)	593
BstKTI	GATC	4 cut(s)	121, 132, 473, 604
BstMAI	GTCTC	1 cut(s)	413
BstMBI	GATC	4 cut(s)	118, 129, 470, 601
BstMWI	GCNNNNNNNGC	1 cut(s)	140
BstNSI	RCATGY	1 cut(s)	662
BstPAI	GACNNNNGTC	1 cut(s)	425
BstSFI	CTRYAG	1 cut(s)	141
BstV1I	GCAGC	1 cut(s)	349
BstX2I	RGATCY	1 cut(s)	118
BstYI	RGATCY	1 cut(s)	118
BsuRI	GGCC	1 cut(s)	204
BtsCI	GGATG	1 cut(s)	593
BtsI	GCAGTG	1 cut(s)	114
BtsIMutI	CAGTG	2 cut(s)	114, 568
Cac8I	GCNNGC	2 cut(s)	591, 667
Csp6I	GTAC	2 cut(s)	159, 632
CspCI	CAANNNNNGTGG	2 cut(s)	535, 570
CviAII	CATG	2 cut(s)	330, 659
CviJI	RGCY	7 cut(s)	5, 70, 76, 204, 290, 362, 589
CviKI_1	RGCY	7 cut(s)	5, 70, 76, 204, 290, 362, 589
CviQI	GTAC	2 cut(s)	159, 632
DdeI	CTNAG	2 cut(s)	537, 645
DpnI	GATC	4 cut(s)	120, 131, 472, 603
DpnII	GATC	4 cut(s)	118, 129, 470, 601
Eam1104I	CTCTTC	3 cut(s)	411, 579, 658
EarI	CTCTTC	3 cut(s)	411, 579, 658
Eco147I	AGGCCT	1 cut(s)	204
Eco31I	GGTCTC	1 cut(s)	413
Eco57I	CTGAAG	1 cut(s)	62
FaeI	CATG	2 cut(s)	333, 662
FaiI	YATR	6 cut(s)	174, 275, 331, 411, 443, 660
FaqI	GGGAC	1 cut(s)	114
FatI	CATG	2 cut(s)	329, 658
Fnu4HI	GCNGC	4 cut(s)	6, 360, 363, 663
FokI	GGATG	1 cut(s)	580
Fsp4HI	GCNGC	4 cut(s)	6, 360, 363, 663
FspBI	CTAG	2 cut(s)	47, 354
GluI	GCNGC	4 cut(s)	6, 360, 363, 663
GsaI	CCCAGC	1 cut(s)	609
GsuI	CTGGAG	1 cut(s)	56
HaeIII	GGCC	1 cut(s)	204
HapII	CCGG	1 cut(s)	321
Hin1II	CATG	2 cut(s)	333, 662
HinfI	GANTC	2 cut(s)	482, 640
HpaII	CCGG	1 cut(s)	321
HphI	GGTGA	4 cut(s)	16, 197, 227, 249
Hpy166II	GTNNAC	4 cut(s)	40, 351, 436, 639
Hpy188I	TCNGA	4 cut(s)	129, 246, 395, 468
Hpy8I	GTNNAC	4 cut(s)	40, 351, 436, 639
HpyCH4III	ACNGT	1 cut(s)	636
HpyCH4IV	ACGT	1 cut(s)	157
HpyCH4V	TGCA	5 cut(s)	112, 143, 315, 365, 593
HpyF10VI	GCNNNNNNNGC	1 cut(s)	140
HpyF3I	CTNAG	2 cut(s)	537, 645
HpySE526I	ACGT	1 cut(s)	157
Hsp92II	CATG	2 cut(s)	333, 662
Kzo9I	GATC	4 cut(s)	118, 129, 470, 601
LguI	GCTCTTC	1 cut(s)	579
LmnI	GCTCC	1 cut(s)	75
LpnPI	CCDG	5 cut(s)	65, 86, 318, 334, 619
Lsp1109I	GCAGC	1 cut(s)	349
LweI	GCATC	1 cut(s)	602
MaeI	CTAG	2 cut(s)	47, 354
MaeII	ACGT	1 cut(s)	157
MaeIII	GTNAC	3 cut(s)	82, 323, 505
MalI	GATC	4 cut(s)	120, 131, 472, 603
MbiI	CCGCTC	1 cut(s)	359
MboI	GATC	4 cut(s)	118, 129, 470, 601
MboII	GAAGA	4 cut(s)	428, 583, 596, 645
MflI	RGATCY	1 cut(s)	118
MluCI	AATT	2 cut(s)	384, 510
MlyI	GAGTC	1 cut(s)	634
MnlI	CCTC	7 cut(s)	160, 162, 176, 393, 496, 622, 654
MseI	TTAA	2 cut(s)	123, 191
MslI	CAYNNNNRTG	1 cut(s)	370
MspA1I	CMGCKG	1 cut(s)	284
MspI	CCGG	1 cut(s)	321
MwoI	GCNNNNNNNGC	1 cut(s)	140
NdeII	GATC	4 cut(s)	118, 129, 470, 601
NlaIII	CATG	2 cut(s)	333, 662
NspI	RCATGY	1 cut(s)	662
PceI	AGGCCT	1 cut(s)	204
PciSI	GCTCTTC	1 cut(s)	579
PfeI	GAWTC	1 cut(s)	482
Pfl23II	CGTACG	1 cut(s)	158
PkrI	GCNGC	4 cut(s)	7, 361, 364, 664
PleI	GAGTC	1 cut(s)	634
PpsI	GAGTC	1 cut(s)	634
Ppu21I	YACGTR	1 cut(s)	158
PshAI	GACNNNNGTC	1 cut(s)	425
PspFI	CCCAGC	1 cut(s)	605
PspLI	CGTACG	1 cut(s)	158
PstI	CTGCAG	1 cut(s)	145
PsuI	RGATCY	1 cut(s)	118
RsaI	GTAC	2 cut(s)	160, 633
RsaNI	GTAC	2 cut(s)	159, 632
RseI	CAYNNNNRTG	1 cut(s)	370
SapI	GCTCTTC	1 cut(s)	579
SaqAI	TTAA	2 cut(s)	123, 191
SatI	GCNGC	4 cut(s)	6, 360, 363, 663
Sau3AI	GATC	4 cut(s)	118, 129, 470, 601
SchI	GAGTC	1 cut(s)	634
SfaNI	GCATC	1 cut(s)	602
SfcI	CTRYAG	1 cut(s)	141
SmiMI	CAYNNNNRTG	1 cut(s)	370
Sse9I	AATT	2 cut(s)	384, 510
SseBI	AGGCCT	1 cut(s)	204
SsiI	CCGC	4 cut(s)	27, 284, 359, 662
SspI	AATATT	1 cut(s)	226
SspMI	CTAG	2 cut(s)	47, 354
StuI	AGGCCT	1 cut(s)	204
TaaI	ACNGT	1 cut(s)	636
TaiI	ACGT	1 cut(s)	160
TaqI	TCGA	1 cut(s)	92
TasI	AATT	2 cut(s)	384, 510
TauI	GCSGC	2 cut(s)	362, 665
TfiI	GAWTC	1 cut(s)	482
Tru1I	TTAA	2 cut(s)	123, 191
Tru9I	TTAA	2 cut(s)	123, 191
TscAI	CASTG	2 cut(s)	114, 568
TseI	GCWGC	2 cut(s)	5, 362
TspDTI	ATGAA	3 cut(s)	210, 240, 495
TspGWI	ACGGA	1 cut(s)	131
TspRI	CASTG	2 cut(s)	114, 568
XceI	RCATGY	1 cut(s)	662
XcmI	CCANNNNNNNNNTGG	1 cut(s)	430
XspI	CTAG	2 cut(s)	47, 354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.