Rh2AG656000

Protein of unknown function (DUF1517)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0006404
Physical Location & Seq
Forward (+)
87275538 .. 87277195
1658 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG656000.1

Sequence Viewer

Length: 636 bp
ATGGGAAAAGTGTCACAGGGCATTGAGGGAACCAGCAATGGCTGCCGTGCTGTTTGGTTTGTTAGTCATGTGAAACCCCAACTCAGCAGCGTTGGCTGCTCCGGTCAAACAAGTGTTGTCAAGCTCCAGCTTCAGGTTACTTTATCGAACACGGGACGAGCAGTGCAAACGGATCTTAATCGGATCGCTGAAACTGCAGATACCTCTACACGTACGGGTTTGAGGTATGTTTTGAGAGATACAGCGGTAGCTCTATTTCGGCAACCTGATTATTGCATTTCCGGTTACTCATGTGTGGGTGTATCAAAGTTCACTAGAGCGGCTGCACAGCAATGCTTTGATAAAATTGTGTTCAGAGAGAGGGTTAGATATGACGAAGAGACCATTGTCAATGTGGACAATATAAAAACTCAAAGCACAACAAGTCAGAGATCAACTAATGAATCTCACAATGACAATGTAGAGGTTACAATTTTACTTGCTGTTGATGGAAAGTCTAAGTTGCCCACTATCATTGACATCAGTGATTTGAAGAAAGTGATGGAAGAGCTTGCATCCATTGATCCCAGCAGACTACTTTTAGGAATAGAGGTACTGTGGACTCCTCAGTTCTCTTCACATGCGGCAAGCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1517

Protein Analysis

211

Amino Acids

23.16

Weight (kDa)

8.27

Isoelectric Point (pI)

28.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1517 PF07466 42 - 205 7.4e-44 Protein of unknown function (DUF1517)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 320
AciI CCGC 3 cut(s) 245, 320, 623
AclWI GGATC 3 cut(s) 180, 191, 557
AcuI CTGAAG 1 cut(s) 116
AfaI GTAC 2 cut(s) 214, 594
AfiI CCNNNNNNNGG 1 cut(s) 133
AflIII ACRYGT 1 cut(s) 209
AgsI TTSAA 1 cut(s) 532
AluBI AGCT 4 cut(s) 124, 130, 251, 550
AluI AGCT 4 cut(s) 124, 130, 251, 550
Alw26I GTCTC 1 cut(s) 374
AlwI GGATC 3 cut(s) 180, 191, 557
ApeKI GCWGC 4 cut(s) 42, 87, 96, 323
BaeI ACNNNNGTAYC 2 cut(s) 231, 264
BbvI GCAGC 4 cut(s) 29, 83, 99, 310
BccI CCATC 2 cut(s) 482, 535
BceAI ACGGC 1 cut(s) 30
BcoDI GTCTC 1 cut(s) 374
BfaI CTAG 1 cut(s) 315
BfmI CTRYAG 1 cut(s) 195
BisI GCNGC 6 cut(s) 43, 88, 97, 321, 324, 624
BlsI GCNGC 6 cut(s) 44, 89, 98, 322, 325, 625
BmiI GGNNCC 1 cut(s) 31
BmsI GCATC 1 cut(s) 563
BoxI GACNNNNGTC 1 cut(s) 386
BpmI CTGGAG 1 cut(s) 110
BsaAI YACGTR 1 cut(s) 212
BsaBI GATNNNNATC 1 cut(s) 177
BsaI GGTCTC 1 cut(s) 374
BsaWI WCCGGW 2 cut(s) 101, 281
Bsc4I CCNNNNNNNGG 1 cut(s) 133
Bse3DI GCAATG 2 cut(s) 43, 338
Bse8I GATNNNNATC 1 cut(s) 177
BseGI GGATG 1 cut(s) 554
BseJI GATNNNNATC 1 cut(s) 177
BseLI CCNNNNNNNGG 1 cut(s) 133
BseMI GCAATG 2 cut(s) 43, 338
BseMII CTCAG 2 cut(s) 97, 620
BseRI GAGGAG 1 cut(s) 594
BseXI GCAGC 4 cut(s) 29, 83, 99, 310
BseYI CCCAGC 1 cut(s) 566
BsgI GTGCAG 1 cut(s) 309
BsiSI CCGG 2 cut(s) 102, 282
BsiWI CGTACG 1 cut(s) 212
BslFI GGGAC 1 cut(s) 168
BslI CCNNNNNNNGG 1 cut(s) 133
BsmAI GTCTC 1 cut(s) 374
BsmFI GGGAC 1 cut(s) 168
Bso31I GGTCTC 1 cut(s) 374
Bsp143I GATC 4 cut(s) 172, 183, 431, 562
BspACI CCGC 3 cut(s) 245, 320, 623
BspCNI CTCAG 2 cut(s) 96, 619
BspLI GGNNCC 1 cut(s) 31
BspMAI CTGCAG 1 cut(s) 199
BspPI GGATC 3 cut(s) 180, 191, 557
BspQI GCTCTTC 1 cut(s) 540
BspTNI GGTCTC 1 cut(s) 374
BsrBI CCGCTC 1 cut(s) 320
BsrDI GCAATG 2 cut(s) 43, 338
BssMI GATC 4 cut(s) 172, 183, 431, 562
Bst4CI ACNGT 1 cut(s) 597
Bst6I CTCTTC 3 cut(s) 372, 540, 619
BstAPI GCANNNNNTGC 1 cut(s) 42
BstBAI YACGTR 1 cut(s) 212
BstC8I GCNNGC 2 cut(s) 552, 628
BstDEI CTNAG 3 cut(s) 83, 498, 606
BstF5I GGATG 1 cut(s) 554
BstKTI GATC 4 cut(s) 175, 186, 434, 565
BstMAI GTCTC 1 cut(s) 374
BstMBI GATC 4 cut(s) 172, 183, 431, 562
BstMWI GCNNNNNNNGC 4 cut(s) 42, 93, 96, 194
BstNSI RCATGY 1 cut(s) 623
BstPAI GACNNNNGTC 1 cut(s) 386
BstSFI CTRYAG 1 cut(s) 195
BstV1I GCAGC 4 cut(s) 29, 83, 99, 310
BstX2I RGATCY 1 cut(s) 172
BstYI RGATCY 1 cut(s) 172
BtsCI GGATG 1 cut(s) 554
BtsI GCAGTG 1 cut(s) 168
BtsIMutI CAGTG 2 cut(s) 168, 529
Cac8I GCNNGC 2 cut(s) 552, 628
Csp6I GTAC 2 cut(s) 213, 593
CspCI CAANNNNNGTGG 2 cut(s) 496, 531
CviAII CATG 3 cut(s) 68, 291, 620
CviJI RGCY 7 cut(s) 42, 96, 124, 130, 251, 323, 550
CviKI_1 RGCY 7 cut(s) 42, 96, 124, 130, 251, 323, 550
CviQI GTAC 2 cut(s) 213, 593
DdeI CTNAG 3 cut(s) 83, 498, 606
DpnI GATC 4 cut(s) 174, 185, 433, 564
DpnII GATC 4 cut(s) 172, 183, 431, 562
Eam1104I CTCTTC 3 cut(s) 372, 540, 619
EarI CTCTTC 3 cut(s) 372, 540, 619
Eco31I GGTCTC 1 cut(s) 374
Eco57I CTGAAG 1 cut(s) 116
FaeI CATG 3 cut(s) 71, 294, 623
FaiI YATR 6 cut(s) 69, 228, 292, 372, 404, 621
FaqI GGGAC 1 cut(s) 168
FatI CATG 3 cut(s) 67, 290, 619
Fnu4HI GCNGC 6 cut(s) 43, 88, 97, 321, 324, 624
FokI GGATG 1 cut(s) 541
Fsp4HI GCNGC 6 cut(s) 43, 88, 97, 321, 324, 624
FspBI CTAG 1 cut(s) 315
GluI GCNGC 6 cut(s) 43, 88, 97, 321, 324, 624
GsaI CCCAGC 1 cut(s) 570
GsuI CTGGAG 1 cut(s) 110
HapII CCGG 2 cut(s) 102, 282
Hin1II CATG 3 cut(s) 71, 294, 623
HinfI GANTC 2 cut(s) 443, 601
HpaII CCGG 2 cut(s) 102, 282
Hpy166II GTNNAC 3 cut(s) 312, 397, 600
Hpy188I TCNGA 3 cut(s) 183, 356, 429
Hpy8I GTNNAC 3 cut(s) 312, 397, 600
HpyCH4III ACNGT 1 cut(s) 597
HpyCH4IV ACGT 1 cut(s) 211
HpyCH4V TGCA 5 cut(s) 166, 197, 276, 326, 554
HpyF10VI GCNNNNNNNGC 4 cut(s) 42, 93, 96, 194
HpyF3I CTNAG 3 cut(s) 83, 498, 606
HpySE526I ACGT 1 cut(s) 211
Hsp92II CATG 3 cut(s) 71, 294, 623
Kzo9I GATC 4 cut(s) 172, 183, 431, 562
LguI GCTCTTC 1 cut(s) 540
LmnI GCTCC 2 cut(s) 104, 129
LpnPI CCDG 8 cut(s) 2, 46, 115, 119, 140, 279, 295, 580
Lsp1109I GCAGC 4 cut(s) 29, 83, 99, 310
LweI GCATC 1 cut(s) 563
MaeI CTAG 1 cut(s) 315
MaeII ACGT 1 cut(s) 211
MaeIII GTNAC 4 cut(s) 12, 136, 284, 466
MalI GATC 4 cut(s) 174, 185, 433, 564
MbiI CCGCTC 1 cut(s) 320
MboI GATC 4 cut(s) 172, 183, 431, 562
MboII GAAGA 4 cut(s) 389, 544, 557, 606
MflI RGATCY 1 cut(s) 172
MluCI AATT 2 cut(s) 345, 471
MlyI GAGTC 1 cut(s) 595
MnlI CCTC 7 cut(s) 19, 214, 216, 354, 457, 583, 615
MseI TTAA 1 cut(s) 177
MslI CAYNNNNRTG 1 cut(s) 331
MspA1I CMGCKG 1 cut(s) 245
MspI CCGG 2 cut(s) 102, 282
MwoI GCNNNNNNNGC 4 cut(s) 42, 93, 96, 194
NdeII GATC 4 cut(s) 172, 183, 431, 562
NlaIII CATG 3 cut(s) 71, 294, 623
NlaIV GGNNCC 1 cut(s) 31
NmuCI GTSAC 1 cut(s) 12
NspI RCATGY 1 cut(s) 623
PciSI GCTCTTC 1 cut(s) 540
PfeI GAWTC 1 cut(s) 443
Pfl23II CGTACG 1 cut(s) 212
PkrI GCNGC 6 cut(s) 44, 89, 98, 322, 325, 625
PleI GAGTC 1 cut(s) 595
PpsI GAGTC 1 cut(s) 595
Ppu21I YACGTR 1 cut(s) 212
PshAI GACNNNNGTC 1 cut(s) 386
PspFI CCCAGC 1 cut(s) 566
PspLI CGTACG 1 cut(s) 212
PspN4I GGNNCC 1 cut(s) 31
PstI CTGCAG 1 cut(s) 199
PsuI RGATCY 1 cut(s) 172
RsaI GTAC 2 cut(s) 214, 594
RsaNI GTAC 2 cut(s) 213, 593
RseI CAYNNNNRTG 1 cut(s) 331
SapI GCTCTTC 1 cut(s) 540
SaqAI TTAA 1 cut(s) 177
SatI GCNGC 6 cut(s) 43, 88, 97, 321, 324, 624
Sau3AI GATC 4 cut(s) 172, 183, 431, 562
SchI GAGTC 1 cut(s) 595
SfaNI GCATC 1 cut(s) 563
SfcI CTRYAG 1 cut(s) 195
SmiMI CAYNNNNRTG 1 cut(s) 331
Sse9I AATT 2 cut(s) 345, 471
SsiI CCGC 3 cut(s) 245, 320, 623
SspMI CTAG 1 cut(s) 315
TaaI ACNGT 1 cut(s) 597
TaiI ACGT 1 cut(s) 214
TaqI TCGA 1 cut(s) 146
TasI AATT 2 cut(s) 345, 471
TauI GCSGC 2 cut(s) 323, 626
TfiI GAWTC 1 cut(s) 443
Tru1I TTAA 1 cut(s) 177
Tru9I TTAA 1 cut(s) 177
TscAI CASTG 2 cut(s) 168, 529
TseFI GTSAC 1 cut(s) 12
TseI GCWGC 4 cut(s) 42, 87, 96, 323
Tsp45I GTSAC 1 cut(s) 12
TspDTI ATGAA 1 cut(s) 456
TspGWI ACGGA 1 cut(s) 185
TspRI CASTG 2 cut(s) 168, 529
XceI RCATGY 1 cut(s) 623
XcmI CCANNNNNNNNNTGG 1 cut(s) 391
XspI CTAG 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.