Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001374

Physical Location & Seq

Genomic Coordinates Forward (+)

18426326 .. 18430795

Gene Structure 4470 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g27160.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGCCGATCAACAACTGAGACTCTATTCCTACTTCAGGAGCTCTTGCTCTTACCGTGTCCGGATTGCCCTCAACCTCAAAGGGCTTAAGTACGAGTACAAAGCCGTGAACTTGTTGAAGGGAGAACAGTTCAGTCCTGAGTTTAGAAAGCTCAATCCGATCGGATATGTGCCGGTGCTTGTGGATGGGGACATTGTTGTTTCCGATTCATTTGCCATTTTATTGTATTTGGAAGAAAAGTACCCGCAACATCCGTTGCTACCTAAAGACCTTCAACGAAAGGCCGTTAACTTCCAGGCCGCAAATATTGTTTCCTCAAGCATACAGCCCCTTCAGAATCTGGCAGTACTGAAGTATATTGAAGAAAAGGTTAGTCCAGATGAGAAAATGGAATGGGCGAAAGTTCATATTGGGAAAGGTTTTGCAGCACTTGAAGATCTACTGAAAAACTATGCAGGAAGATTTGCAACTGGAGATGATGTTTCCTTTGCAGACATATTCCTAGCCCCCCAGATTCATGCAGCTTTTACAAGGTTCAATCTAGACATGACCCAGTTCCCCCTTTTGTCCAGGTTGCATGAGGCATACAATGAGATACCAGCTTTTGTAGATGCTAGACCAGATAAGCAGCCGGATGCTCCTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006725 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016034 GO:0016054 GO:0016853 GO:0016859 GO:0018958 GO:0019336 GO:0019439 GO:0019748 GO:0019752 GO:0032787 GO:0042221 GO:0043436 GO:0044237 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0050896 GO:0071704 GO:0072329 GO:0098754 GO:1901360 GO:1901361 GO:1901575 GO:1901615 GO:1901616 GO:1901999 GO:1902000

KEGG Pathways

Metabolic & Signaling

ko00350 ko00643 ko01100 ko01120 map00350 map00643 map01100 map01120

Pfam Domains

Protein Families

GST_C GST_C_2 GST_C_3 GST_N GST_N_3

Protein Analysis

216

Amino Acids

24.44

Weight (kDa)

6.43

Isoelectric Point (pI)

42.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	5 - 78	3e-17	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	8 - 84	1.8e-16	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	14 - 79	3.4e-16	Glutathione S-transferase, N-terminal domain
GST_C_3	PF14497	119 - 201	7.4e-07	Glutathione S-transferase, C-terminal domain
GST_C_2	PF13410	135 - 191	4e-06	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02380 AT2G02390 AT2G02390 AT2G02390 AT2G02390
fragaria_vesca	FvH4_5g27160
malus_domestica	MD08G1250500.v1.1 MD15G1445700.v1.1
prunus_persica	Prupe.1G587700_v2.0.a1 Prupe.1G587700_v2.0.a1
pyrus_communis	pycom08g21730 pycom15g39250
rosa_chinensis	RchiOBHm_Chr7g0218201 RchiOBHm_Chr7g0218231 RchiOBHm_Chr7g0218251
rosa_laevigata	RLG00000002386 RLG00000002388 RLG00000002390
rosa_multiflora	Rmu_sc0004956.1_g000003 Rmu_sc0008593.1_g000004 Rmu_sc0008593.1_g000008 Rmu_sc0011666.1_g000005 Rmu_sc0021950.1_g000001 Rmu_sc0024798.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032070 Rroxscaffold_3G00241200 Rroxscaffold_3G00241210
rosa_rugosa	Rorug07G0174800 Rorug07G0174900 Rorug07G0175000 Rorug07G0175200 Rorug07G0175300 Rorug07G0175400 Rorug07G0175500 Rorug07G0175500 Rorug07G0175600 Rorug07G0175700 Rorug07G0175800
rosa_samantha	Rh7AG304100 Rh7AG304200 Rh7BG308500 Rh7BG308600 Rh7BG308700 Rh7BG308800 Rh7CG322500 Rh7CG322700 Rh7CG334300 Rh7DG304300 Rh7DG316400
rosa_wichuraiana	Rw7G025830 Rw7G026860 Rw7G026940 Rw7G026950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	60
AciI	CCGC	2 cut(s)	245, 300
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	3 cut(s)	19, 317, 371
AfaI	GTAC	4 cut(s)	92, 98, 242, 348
AfiI	CCNNNNNNNGG	1 cut(s)	36
AflII	CTTAAG	1 cut(s)	86
AgsI	TTSAA	5 cut(s)	118, 275, 362, 434, 538
AjnI	CCWGG	2 cut(s)	294, 569
AluBI	AGCT	4 cut(s)	42, 151, 524, 602
AluI	AGCT	4 cut(s)	42, 151, 524, 602
Alw21I	GWGCWC	1 cut(s)	44
Alw26I	GTCTC	1 cut(s)	13
AlwNI	CAGNNNCTG	1 cut(s)	340
Aor13HI	TCCGGA	1 cut(s)	60
AoxI	GGCC	3 cut(s)	3, 282, 297
ApeKI	GCWGC	3 cut(s)	425, 521, 628
BanII	GRGCYC	1 cut(s)	44
Bbv12I	GWGCWC	1 cut(s)	44
BbvI	GCAGC	3 cut(s)	437, 533, 640
BccI	CCATC	1 cut(s)	179
BceAI	ACGGC	2 cut(s)	89, 269
BcgI	CGANNNNNNTGC	2 cut(s)	194, 228
BciT130I	CCWGG	2 cut(s)	296, 571
BcoDI	GTCTC	1 cut(s)	13
BfaI	CTAG	3 cut(s)	503, 542, 615
BfrI	CTTAAG	1 cut(s)	86
BglII	AGATCT	1 cut(s)	436
BisI	GCNGC	4 cut(s)	300, 426, 522, 629
BlsI	GCNGC	4 cut(s)	301, 427, 523, 630
BmcAI	AGTACT	1 cut(s)	348
Bme1390I	CCNGG	2 cut(s)	296, 571
BmrFI	CCNGG	2 cut(s)	296, 571
BmrI	ACTGGG	1 cut(s)	547
BmsI	GCATC	2 cut(s)	601, 625
BmuI	ACTGGG	1 cut(s)	547
BpmI	CTGGAG	1 cut(s)	492
BpuEI	CTTGAG	1 cut(s)	301
BsaWI	WCCGGW	1 cut(s)	60
BsaXI	ACNNNNNCTCC	2 cut(s)	465, 495
Bsc4I	CCNNNNNNNGG	1 cut(s)	36
Bse118I	RCCGGY	1 cut(s)	172
Bse1I	ACTGG	2 cut(s)	475, 553
BseAI	TCCGGA	1 cut(s)	60
BseBI	CCWGG	2 cut(s)	296, 571
BseGI	GGATG	3 cut(s)	190, 250, 640
BseLI	CCNNNNNNNGG	1 cut(s)	36
BseMII	CTCAG	2 cut(s)	8, 129
BseNI	ACTGG	2 cut(s)	475, 553
BseXI	GCAGC	3 cut(s)	437, 533, 640
Bsh1285I	CGRYCG	1 cut(s)	162
BshFI	GGCC	3 cut(s)	5, 284, 299
BsiEI	CGRYCG	1 cut(s)	162
BsiHKAI	GWGCWC	1 cut(s)	44
BsiSI	CCGG	3 cut(s)	61, 173, 632
BslFI	GGGAC	1 cut(s)	203
BslI	CCNNNNNNNGG	1 cut(s)	36
BsmAI	GTCTC	1 cut(s)	13
BsmFI	GGGAC	1 cut(s)	203
BsnI	GGCC	3 cut(s)	5, 284, 299
Bsp1286I	GDGCHC	1 cut(s)	44
Bsp13I	TCCGGA	1 cut(s)	60
Bsp143I	GATC	3 cut(s)	7, 159, 436
BspACI	CCGC	2 cut(s)	245, 300
BspANI	GGCC	3 cut(s)	5, 284, 299
BspCNI	CTCAG	2 cut(s)	9, 130
BspEI	TCCGGA	1 cut(s)	60
BspTI	CTTAAG	1 cut(s)	86
BsrFI	RCCGGY	1 cut(s)	172
BsrI	ACTGG	2 cut(s)	475, 553
BssAI	RCCGGY	1 cut(s)	172
BssMI	GATC	3 cut(s)	7, 159, 436
Bst2UI	CCWGG	2 cut(s)	296, 571
Bst4CI	ACNGT	2 cut(s)	56, 129
BstAFI	CTTAAG	1 cut(s)	86
BstDEI	CTNAG	2 cut(s)	17, 138
BstENI	CCTNNNNNAGG	1 cut(s)	34
BstF5I	GGATG	3 cut(s)	190, 250, 640
BstKTI	GATC	3 cut(s)	10, 162, 439
BstMAI	GTCTC	1 cut(s)	13
BstMBI	GATC	3 cut(s)	7, 159, 436
BstMCI	CGRYCG	1 cut(s)	162
BstNI	CCWGG	2 cut(s)	296, 571
BstSCI	CCNGG	2 cut(s)	294, 569
BstV1I	GCAGC	3 cut(s)	437, 533, 640
BstX2I	RGATCY	1 cut(s)	436
BstYI	RGATCY	1 cut(s)	436
BsuRI	GGCC	3 cut(s)	5, 284, 299
BtsCI	GGATG	3 cut(s)	190, 250, 640
CaiI	CAGNNNCTG	1 cut(s)	340
Cfr10I	RCCGGY	1 cut(s)	172
Csp6I	GTAC	4 cut(s)	91, 97, 241, 347
CviAII	CATG	3 cut(s)	518, 547, 578
CviQI	GTAC	4 cut(s)	91, 97, 241, 347
DdeI	CTNAG	2 cut(s)	17, 138
DpnI	GATC	3 cut(s)	9, 161, 438
DpnII	GATC	3 cut(s)	7, 159, 436
EaeI	YGGCCR	1 cut(s)	3
Ecl136II	GAGCTC	1 cut(s)	42
Eco24I	GRGCYC	1 cut(s)	44
Eco53kI	GAGCTC	1 cut(s)	42
Eco57I	CTGAAG	3 cut(s)	19, 317, 371
EcoICRI	GAGCTC	1 cut(s)	42
EcoNI	CCTNNNNNAGG	1 cut(s)	34
EcoRII	CCWGG	2 cut(s)	294, 569
EcoT38I	GRGCYC	1 cut(s)	44
FaeI	CATG	3 cut(s)	521, 550, 581
FaqI	GGGAC	1 cut(s)	203
FatI	CATG	3 cut(s)	517, 546, 577
FauI	CCCGC	1 cut(s)	252
Fnu4HI	GCNGC	4 cut(s)	300, 426, 522, 629
FokI	GGATG	2 cut(s)	197, 237
FriOI	GRGCYC	1 cut(s)	44
Fsp4HI	GCNGC	4 cut(s)	300, 426, 522, 629
FspBI	CTAG	3 cut(s)	503, 542, 615
GluI	GCNGC	4 cut(s)	300, 426, 522, 629
GsuI	CTGGAG	1 cut(s)	492
HaeIII	GGCC	3 cut(s)	5, 284, 299
HapII	CCGG	3 cut(s)	61, 173, 632
Hin1II	CATG	3 cut(s)	521, 550, 581
HincII	GTYRAC	1 cut(s)	289
HindII	GTYRAC	1 cut(s)	289
HinfI	GANTC	4 cut(s)	21, 206, 337, 514
HpaI	GTTAAC	1 cut(s)	289
HpaII	CCGG	3 cut(s)	61, 173, 632
Hpy166II	GTNNAC	2 cut(s)	109, 289
Hpy188I	TCNGA	4 cut(s)	159, 164, 205, 336
Hpy188III	TCNNGA	5 cut(s)	37, 61, 137, 377, 542
Hpy8I	GTNNAC	2 cut(s)	109, 289
HpyAV	CCTTC	3 cut(s)	112, 281, 341
HpyCH4III	ACNGT	2 cut(s)	56, 129
HpyCH4V	TGCA	6 cut(s)	425, 455, 467, 491, 521, 577
HpyF3I	CTNAG	2 cut(s)	17, 138
Hsp92II	CATG	3 cut(s)	521, 550, 581
Kpn2I	TCCGGA	1 cut(s)	60
KspAI	GTTAAC	1 cut(s)	289
Kzo9I	GATC	3 cut(s)	7, 159, 436
LmnI	GCTCC	2 cut(s)	39, 643
Lsp1109I	GCAGC	3 cut(s)	437, 533, 640
LweI	GCATC	2 cut(s)	601, 625
MaeI	CTAG	3 cut(s)	503, 542, 615
MalI	GATC	3 cut(s)	9, 161, 438
MboI	GATC	3 cut(s)	7, 159, 436
MboII	GAAGA	4 cut(s)	245, 374, 446, 471
MflI	RGATCY	1 cut(s)	436
MhlI	GDGCHC	1 cut(s)	44
MlyI	GAGTC	1 cut(s)	15
MnlI	CCTC	4 cut(s)	80, 86, 325, 574
MroI	TCCGGA	1 cut(s)	60
MseI	TTAA	2 cut(s)	87, 288
MspCI	CTTAAG	1 cut(s)	86
MspI	CCGG	3 cut(s)	61, 173, 632
MspR9I	CCNGG	2 cut(s)	296, 571
MvaI	CCWGG	2 cut(s)	296, 571
NdeII	GATC	3 cut(s)	7, 159, 436
NlaIII	CATG	3 cut(s)	521, 550, 581
PfeI	GAWTC	3 cut(s)	206, 337, 514
PkrI	GCNGC	4 cut(s)	301, 427, 523, 630
Ple19I	CGATCG	1 cut(s)	162
PleI	GAGTC	1 cut(s)	15
PpsI	GAGTC	1 cut(s)	15
Psp124BI	GAGCTC	1 cut(s)	44
Psp6I	CCWGG	2 cut(s)	294, 569
PspGI	CCWGG	2 cut(s)	294, 569
PstNI	CAGNNNCTG	1 cut(s)	340
PsuI	RGATCY	1 cut(s)	436
PvuI	CGATCG	1 cut(s)	162
RsaI	GTAC	4 cut(s)	92, 98, 242, 348
RsaNI	GTAC	4 cut(s)	91, 97, 241, 347
SacI	GAGCTC	1 cut(s)	44
SaqAI	TTAA	2 cut(s)	87, 288
SatI	GCNGC	4 cut(s)	300, 426, 522, 629
Sau3AI	GATC	3 cut(s)	7, 159, 436
ScaI	AGTACT	1 cut(s)	348
SchI	GAGTC	1 cut(s)	15
ScrFI	CCNGG	2 cut(s)	296, 571
SduI	GDGCHC	1 cut(s)	44
SfaNI	GCATC	2 cut(s)	601, 625
SmlI	CTYRAG	2 cut(s)	86, 316
SmoI	CTYRAG	2 cut(s)	86, 316
SsiI	CCGC	2 cut(s)	245, 300
SspI	AATATT	1 cut(s)	307
SspMI	CTAG	3 cut(s)	503, 542, 615
SstI	GAGCTC	1 cut(s)	44
StyD4I	CCNGG	2 cut(s)	294, 569
TaaI	ACNGT	2 cut(s)	56, 129
TatI	WGTACW	2 cut(s)	96, 346
TauI	GCSGC	1 cut(s)	302
TfiI	GAWTC	3 cut(s)	206, 337, 514
Tru1I	TTAA	2 cut(s)	87, 288
Tru9I	TTAA	2 cut(s)	87, 288
TseI	GCWGC	3 cut(s)	425, 521, 628
TspDTI	ATGAA	4 cut(s)	198, 395, 506, 633
TspGWI	ACGGA	1 cut(s)	243
Vha464I	CTTAAG	1 cut(s)	86
XagI	CCTNNNNNAGG	1 cut(s)	34
XbaI	TCTAGA	1 cut(s)	541
XspI	CTAG	3 cut(s)	503, 542, 615
ZrmI	AGTACT	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.