Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008593.1

Orthogroup ID

OG0001374

Physical Location & Seq

Genomic Coordinates Reverse (-)

44381 .. 48033

Gene Structure 3653 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008593.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

atggcgactgctagtgatcaacaactgaaattgtattcctactacaggagctcttgctctttccgtgtccgaattgccctcaacctcaaagggctcaaatacgagtacaaagctgtaaacttgttgaagaaagaacagtatagtcctgagtttagaaagctcaatccaatcggctatgtgccggtgctagtggatggggaaatgattgtttccgattcatttgccattttattgtatttggaagaaaagtatccacaacatccgttgttgcctaaagaccttcagcgaaaggccattaacctccaggtcagtctcgtgtcaaggatattggcacttgaagatctactgagaaactatgcaggaagatatgcaactggagatgaagtttcttttgcagatttgtttttggcgccccagattcatgcagcttttacaaggttcaatctagacatgacccagttcccccttttgtccaggctgcatgaggcatacaatgagataccagcattcgtagatgctaggccagataagcagccggatgctccttcttcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006725 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016034 GO:0016054 GO:0016853 GO:0016859 GO:0018958 GO:0019336 GO:0019439 GO:0019748 GO:0019752 GO:0032787 GO:0042221 GO:0043436 GO:0044237 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0050896 GO:0071704 GO:0072329 GO:0098754 GO:1901360 GO:1901361 GO:1901575 GO:1901615 GO:1901616 GO:1901999 GO:1902000

KEGG Pathways

Metabolic & Signaling

ko00350 ko00643 ko01100 ko01120 map00350 map00643 map01100 map01120

Pfam Domains

Protein Families

GST_C GST_C_2 GST_C_3 GST_N GST_N_3

Protein Analysis

184

Amino Acids

21.08

Weight (kDa)

7.78

Isoelectric Point (pI)

42.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02380 AT2G02390 AT2G02390 AT2G02390 AT2G02390
fragaria_vesca	FvH4_5g27160
malus_domestica	MD08G1250500.v1.1 MD15G1445700.v1.1
prunus_persica	Prupe.1G587700_v2.0.a1 Prupe.1G587700_v2.0.a1
pyrus_communis	pycom08g21730 pycom15g39250
rosa_chinensis	RchiOBHm_Chr7g0218201 RchiOBHm_Chr7g0218231 RchiOBHm_Chr7g0218251
rosa_laevigata	RLG00000002386 RLG00000002388 RLG00000002390
rosa_multiflora	Rmu_sc0004956.1_g000003 Rmu_sc0008593.1_g000004 Rmu_sc0008593.1_g000008 Rmu_sc0011666.1_g000005 Rmu_sc0021950.1_g000001 Rmu_sc0024798.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032070 Rroxscaffold_3G00241200 Rroxscaffold_3G00241210
rosa_rugosa	Rorug07G0174800 Rorug07G0174900 Rorug07G0175000 Rorug07G0175200 Rorug07G0175300 Rorug07G0175400 Rorug07G0175500 Rorug07G0175500 Rorug07G0175600 Rorug07G0175700 Rorug07G0175800
rosa_samantha	Rh7AG304100 Rh7AG304200 Rh7BG308500 Rh7BG308600 Rh7BG308700 Rh7BG308800 Rh7CG322500 Rh7CG322700 Rh7CG334300 Rh7DG304300 Rh7DG316400
rosa_wichuraiana	Rw7G025830 Rw7G026860 Rw7G026940 Rw7G026950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	409
AcuI	CTGAAG	1 cut(s)	266
AcyI	GRCGYC	1 cut(s)	410
AfaI	GTAC	1 cut(s)	107
AfiI	CCNNNNNNNGG	1 cut(s)	45
AgsI	TTSAA	3 cut(s)	127, 338, 442
AjnI	CCWGG	2 cut(s)	303, 473
AluBI	AGCT	4 cut(s)	51, 113, 160, 428
AluI	AGCT	4 cut(s)	51, 113, 160, 428
Alw21I	GWGCWC	1 cut(s)	53
Alw26I	GTCTC	1 cut(s)	317
AoxI	GGCC	2 cut(s)	291, 521
ApeKI	GCWGC	3 cut(s)	425, 478, 532
AspLEI	GCGC	1 cut(s)	412
BanI	GGYRCC	1 cut(s)	409
BanII	GRGCYC	2 cut(s)	53, 96
BauI	CACGAG	1 cut(s)	314
Bbv12I	GWGCWC	1 cut(s)	53
BbvI	GCAGC	3 cut(s)	437, 465, 544
BccI	CCATC	1 cut(s)	188
BcgI	CGANNNNNNTGC	2 cut(s)	203, 237
BciT130I	CCWGG	2 cut(s)	305, 475
BciVI	GTATCC	1 cut(s)	261
BclI	TGATCA	1 cut(s)	16
BcoDI	GTCTC	1 cut(s)	317
BfaI	CTAG	4 cut(s)	12, 188, 446, 519
BfmI	CTRYAG	1 cut(s)	43
BfoI	RGCGCY	1 cut(s)	413
BfuI	GTATCC	1 cut(s)	261
BglII	AGATCT	1 cut(s)	340
BisI	GCNGC	3 cut(s)	426, 479, 533
BlsI	GCNGC	3 cut(s)	427, 480, 534
Bme1390I	CCNGG	2 cut(s)	305, 475
BmiI	GGNNCC	1 cut(s)	411
BmrFI	CCNGG	2 cut(s)	305, 475
BmrI	ACTGGG	1 cut(s)	451
BmsI	GCATC	2 cut(s)	505, 529
BmuI	ACTGGG	1 cut(s)	451
BpmI	CTGGAG	2 cut(s)	287, 396
BsaHI	GRCGYC	1 cut(s)	410
BsaXI	ACNNNNNCTCC	2 cut(s)	369, 399
Bsc4I	CCNNNNNNNGG	1 cut(s)	45
Bse118I	RCCGGY	1 cut(s)	181
Bse1I	ACTGG	2 cut(s)	379, 457
BseBI	CCWGG	2 cut(s)	305, 475
BseGI	GGATG	3 cut(s)	199, 259, 544
BseLI	CCNNNNNNNGG	1 cut(s)	45
BseMII	CTCAG	2 cut(s)	138, 338
BseNI	ACTGG	2 cut(s)	379, 457
BseXI	GCAGC	3 cut(s)	437, 465, 544
BshFI	GGCC	2 cut(s)	293, 523
BshNI	GGYRCC	1 cut(s)	409
BsiHKAI	GWGCWC	1 cut(s)	53
BsiSI	CCGG	2 cut(s)	182, 536
BslI	CCNNNNNNNGG	1 cut(s)	45
BsmAI	GTCTC	1 cut(s)	317
BsmI	GAATGC	1 cut(s)	506
BsnI	GGCC	2 cut(s)	293, 523
Bsp1286I	GDGCHC	2 cut(s)	53, 96
Bsp143I	GATC	2 cut(s)	16, 340
BspANI	GGCC	2 cut(s)	293, 523
BspCNI	CTCAG	2 cut(s)	139, 339
BspLI	GGNNCC	1 cut(s)	411
BspT107I	GGYRCC	1 cut(s)	409
BsrFI	RCCGGY	1 cut(s)	181
BsrI	ACTGG	2 cut(s)	379, 457
BssAI	RCCGGY	1 cut(s)	181
BssMI	GATC	2 cut(s)	16, 340
BssNI	GRCGYC	1 cut(s)	410
BssSI	CACGAG	1 cut(s)	314
Bst2BI	CACGAG	1 cut(s)	314
Bst2UI	CCWGG	2 cut(s)	305, 475
Bst4CI	ACNGT	1 cut(s)	138
BstACI	GRCGYC	1 cut(s)	410
BstDEI	CTNAG	2 cut(s)	147, 347
BstENI	CCTNNNNNAGG	1 cut(s)	43
BstF5I	GGATG	3 cut(s)	199, 259, 544
BstH2I	RGCGCY	1 cut(s)	413
BstHHI	GCGC	1 cut(s)	412
BstKTI	GATC	2 cut(s)	19, 343
BstMAI	GTCTC	1 cut(s)	317
BstMBI	GATC	2 cut(s)	16, 340
BstMWI	GCNNNNNNNGC	1 cut(s)	529
BstNI	CCWGG	2 cut(s)	305, 475
BstSCI	CCNGG	2 cut(s)	303, 473
BstSFI	CTRYAG	1 cut(s)	43
BstV1I	GCAGC	3 cut(s)	437, 465, 544
BstX2I	RGATCY	1 cut(s)	340
BstYI	RGATCY	1 cut(s)	340
BsuI	GTATCC	1 cut(s)	261
BsuRI	GGCC	2 cut(s)	293, 523
BtsCI	GGATG	3 cut(s)	199, 259, 544
CfoI	GCGC	1 cut(s)	412
Cfr10I	RCCGGY	1 cut(s)	181
Csp6I	GTAC	1 cut(s)	106
CviAII	CATG	3 cut(s)	422, 451, 482
CviQI	GTAC	1 cut(s)	106
DdeI	CTNAG	2 cut(s)	147, 347
DinI	GGCGCC	1 cut(s)	411
DpnI	GATC	2 cut(s)	18, 342
DpnII	GATC	2 cut(s)	16, 340
Ecl136II	GAGCTC	1 cut(s)	51
Eco24I	GRGCYC	2 cut(s)	53, 96
Eco53kI	GAGCTC	1 cut(s)	51
Eco57I	CTGAAG	1 cut(s)	266
EcoICRI	GAGCTC	1 cut(s)	51
EcoNI	CCTNNNNNAGG	1 cut(s)	43
EcoRII	CCWGG	2 cut(s)	303, 473
EcoT38I	GRGCYC	2 cut(s)	53, 96
EgeI	GGCGCC	1 cut(s)	411
EheI	GGCGCC	1 cut(s)	411
FaeI	CATG	3 cut(s)	425, 454, 485
FaiI	YATR	9 cut(s)	141, 177, 357, 369, 423, 452, 483, 490, 553
FatI	CATG	3 cut(s)	421, 450, 481
FbaI	TGATCA	1 cut(s)	16
Fnu4HI	GCNGC	3 cut(s)	426, 479, 533
FokI	GGATG	3 cut(s)	206, 246, 551
FriOI	GRGCYC	2 cut(s)	53, 96
Fsp4HI	GCNGC	3 cut(s)	426, 479, 533
FspBI	CTAG	4 cut(s)	12, 188, 446, 519
GlaI	GCGC	1 cut(s)	411
GluI	GCNGC	3 cut(s)	426, 479, 533
GsuI	CTGGAG	2 cut(s)	287, 396
HaeII	RGCGCY	1 cut(s)	413
HaeIII	GGCC	2 cut(s)	293, 523
HapII	CCGG	2 cut(s)	182, 536
HhaI	GCGC	1 cut(s)	412
Hin1I	GRCGYC	1 cut(s)	410
Hin1II	CATG	3 cut(s)	425, 454, 485
Hin6I	GCGC	1 cut(s)	410
HinP1I	GCGC	1 cut(s)	410
HinfI	GANTC	2 cut(s)	215, 418
HpaII	CCGG	2 cut(s)	182, 536
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188I	TCNGA	2 cut(s)	71, 214
Hpy188III	TCNNGA	2 cut(s)	146, 446
Hpy8I	GTNNAC	1 cut(s)	118
HpyAV	CCTTC	2 cut(s)	290, 555
HpyCH4III	ACNGT	1 cut(s)	138
HpyCH4V	TGCA	5 cut(s)	359, 371, 395, 425, 481
HpyF10VI	GCNNNNNNNGC	1 cut(s)	529
HpyF3I	CTNAG	2 cut(s)	147, 347
Hsp92I	GRCGYC	1 cut(s)	410
Hsp92II	CATG	3 cut(s)	425, 454, 485
HspAI	GCGC	1 cut(s)	410
KasI	GGCGCC	1 cut(s)	409
Ksp22I	TGATCA	1 cut(s)	16
Kzo9I	GATC	2 cut(s)	16, 340
LmnI	GCTCC	2 cut(s)	48, 547
Lsp1109I	GCAGC	3 cut(s)	437, 465, 544
LweI	GCATC	2 cut(s)	505, 529
MaeI	CTAG	4 cut(s)	12, 188, 446, 519
MalI	GATC	2 cut(s)	18, 342
MboI	GATC	2 cut(s)	16, 340
MboII	GAAGA	5 cut(s)	139, 254, 350, 375, 540
MflI	RGATCY	1 cut(s)	340
MhlI	GDGCHC	2 cut(s)	53, 96
MluCI	AATT	2 cut(s)	29, 72
Mly113I	GGCGCC	1 cut(s)	410
MnlI	CCTC	4 cut(s)	89, 95, 311, 478
MseI	TTAA	1 cut(s)	297
MspI	CCGG	2 cut(s)	182, 536
MspR9I	CCNGG	2 cut(s)	305, 475
Mva1269I	GAATGC	1 cut(s)	506
MvaI	CCWGG	2 cut(s)	305, 475
MwoI	GCNNNNNNNGC	1 cut(s)	529
NarI	GGCGCC	1 cut(s)	410
NdeII	GATC	2 cut(s)	16, 340
NlaIII	CATG	3 cut(s)	425, 454, 485
NlaIV	GGNNCC	1 cut(s)	411
PctI	GAATGC	1 cut(s)	506
PfeI	GAWTC	2 cut(s)	215, 418
PkrI	GCNGC	3 cut(s)	427, 480, 534
PluTI	GGCGCC	1 cut(s)	413
Psp124BI	GAGCTC	1 cut(s)	53
Psp6I	CCWGG	2 cut(s)	303, 473
PspGI	CCWGG	2 cut(s)	303, 473
PspN4I	GGNNCC	1 cut(s)	411
PsuI	RGATCY	1 cut(s)	340
RsaI	GTAC	1 cut(s)	107
RsaNI	GTAC	1 cut(s)	106
SacI	GAGCTC	1 cut(s)	53
SaqAI	TTAA	1 cut(s)	297
SatI	GCNGC	3 cut(s)	426, 479, 533
Sau3AI	GATC	2 cut(s)	16, 340
ScrFI	CCNGG	2 cut(s)	305, 475
SduI	GDGCHC	2 cut(s)	53, 96
SetI	ASST	9 cut(s)	53, 87, 115, 162, 282, 303, 309, 430, 440
SfaNI	GCATC	2 cut(s)	505, 529
SfcI	CTRYAG	1 cut(s)	43
SfoI	GGCGCC	1 cut(s)	411
Sse9I	AATT	2 cut(s)	29, 72
SspDI	GGCGCC	1 cut(s)	409
SspMI	CTAG	4 cut(s)	12, 188, 446, 519
SstI	GAGCTC	1 cut(s)	53
StyD4I	CCNGG	2 cut(s)	303, 473
TaaI	ACNGT	1 cut(s)	138
TasI	AATT	2 cut(s)	29, 72
TatI	WGTACW	1 cut(s)	105
TfiI	GAWTC	2 cut(s)	215, 418
Tru1I	TTAA	1 cut(s)	297
Tru9I	TTAA	1 cut(s)	297
TseI	GCWGC	3 cut(s)	425, 478, 532
TspDTI	ATGAA	4 cut(s)	207, 396, 410, 540
TspGWI	ACGGA	2 cut(s)	53, 252
XagI	CCTNNNNNAGG	1 cut(s)	43
XbaI	TCTAGA	1 cut(s)	445
XspI	CTAG	4 cut(s)	12, 188, 446, 519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.