Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001374

Physical Location & Seq

Genomic Coordinates Forward (+)

14455817 .. 14458125

Gene Structure 2309 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0175200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGGTGGTGGCTTCTCGTTCTTTAAGGTGGACCCAGTTGGGTCTTTGCCTCTGCAATCAAAGTCGGGTCTTGGGGATTTGCCGGAGAGCTGTGCGGCGGAGATTATGAGGTACTTGGACCCGCCGGAGATTTGCAAGCTGGCCAAGATGAATCGGGCTTTTCGTGGGGCTTCCTGGGCCGATTTTATATGGGAGTCGAAATTGCCTAGTAATTATCAGATTATTGTGAACAAAGTGTTTGGTGATGGGTTGGGAAATTTGGGGAAAAGAGATGTGTATGAGAGGCTTTGTAGGCCTAACCCGTTTGATGGGGGAGCCAAGACGGTTTGGCTGGATAAGCGCACAGGATCTGCTTGCTTGTCCATTTCGTCAAAGGGATTAGCAATTACTGGAATCGATGATCGAAGATATTGGAATCATATTCCTACCGAAGAATCTAGATTTAGAACTGTTGCATATCTTCAGCAAATATGGTGGTTTGAGGTAGATGGGGAGGTCGAGTTCCCATTTCCAGCCGGGAAATACAGCTTGTATTTTAGGCTGCAGCTGGGACGCTCTTCTCAGAAGAGGTTTGGTCGCCGTGTTTGCAACACTGAGCATGTCCATGGCTGGGACAGAAAACCAGTGAGGTTCCAACTATGGACTTCAGAAGGTCAGTCTGCCTCATCCGAGTGCTTTTTAACTGAACCTGGGAAATGGAATCACTACCATGCTGGGGACTTTGTTGTGGAAAACCCAAATGCAGTAACAAAGATTAAACTCTCGATGACCCAGATTGATTGTACACACACCAAAGGCGGTCTCTGTTTAGACTCTGTAGTTATATACCCTAGTGAATTTAGAGAAAGGTTGAAGCAGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006725 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016034 GO:0016054 GO:0016853 GO:0016859 GO:0018958 GO:0019336 GO:0019439 GO:0019748 GO:0019752 GO:0032787 GO:0042221 GO:0043436 GO:0044237 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0050896 GO:0071704 GO:0072329 GO:0098754 GO:1901360 GO:1901361 GO:1901575 GO:1901615 GO:1901616 GO:1901999 GO:1902000

KEGG Pathways

Metabolic & Signaling

ko00350 ko00643 ko01100 ko01120 map00350 map00643 map01100 map01120

Pfam Domains

Protein Families

GST_C GST_C_2 GST_C_3 GST_N GST_N_3

Protein Analysis

287

Amino Acids

32.67

Weight (kDa)

8.84

Isoelectric Point (pI)

52.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2	PF14299	118 - 277	3e-39	Phloem protein 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02380 AT2G02390 AT2G02390 AT2G02390 AT2G02390
fragaria_vesca	FvH4_5g27160
malus_domestica	MD08G1250500.v1.1 MD15G1445700.v1.1
prunus_persica	Prupe.1G587700_v2.0.a1 Prupe.1G587700_v2.0.a1
pyrus_communis	pycom08g21730 pycom15g39250
rosa_chinensis	RchiOBHm_Chr7g0218201 RchiOBHm_Chr7g0218231 RchiOBHm_Chr7g0218251
rosa_laevigata	RLG00000002386 RLG00000002388 RLG00000002390
rosa_multiflora	Rmu_sc0004956.1_g000003 Rmu_sc0008593.1_g000004 Rmu_sc0008593.1_g000008 Rmu_sc0011666.1_g000005 Rmu_sc0021950.1_g000001 Rmu_sc0024798.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032070 Rroxscaffold_3G00241200 Rroxscaffold_3G00241210
rosa_rugosa	Rorug07G0174800 Rorug07G0174900 Rorug07G0175000 Rorug07G0175200 Rorug07G0175300 Rorug07G0175400 Rorug07G0175500 Rorug07G0175500 Rorug07G0175600 Rorug07G0175700 Rorug07G0175800
rosa_samantha	Rh7AG304100 Rh7AG304200 Rh7BG308500 Rh7BG308600 Rh7BG308700 Rh7BG308800 Rh7CG322500 Rh7CG322700 Rh7CG334300 Rh7DG304300 Rh7DG316400
rosa_wichuraiana	Rw7G025830 Rw7G026860 Rw7G026940 Rw7G026950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	95, 98, 122, 798
AclWI	GGATC	1 cut(s)	355
AcoI	YGGCCR	1 cut(s)	141
AcsI	RAATTY	2 cut(s)	256, 836
AcuI	CTGAAG	2 cut(s)	446, 630
AfaI	GTAC	2 cut(s)	113, 784
AfiI	CCNNNNNNNGG	3 cut(s)	308, 610, 715
AgsI	TTSAA	1 cut(s)	853
AjnI	CCWGG	2 cut(s)	173, 688
AloI	GAACNNNNNNTCC	2 cut(s)	485, 517
AluBI	AGCT	4 cut(s)	90, 139, 528, 547
AluI	AGCT	4 cut(s)	90, 139, 528, 547
Alw26I	GTCTC	1 cut(s)	806
AlwI	GGATC	1 cut(s)	355
AlwNI	CAGNNNCTG	1 cut(s)	350
AoxI	GGCC	3 cut(s)	141, 177, 293
ApeKI	GCWGC	2 cut(s)	541, 544
ApoI	RAATTY	2 cut(s)	256, 836
AspLEI	GCGC	1 cut(s)	342
AspS9I	GGNCC	3 cut(s)	31, 118, 177
AsuC2I	CCSGG	1 cut(s)	517
AsuHPI	GGTGA	1 cut(s)	254
AvaII	GGWCC	2 cut(s)	31, 118
BalI	TGGCCA	1 cut(s)	143
BbvI	GCAGC	2 cut(s)	528, 556
BccI	CCATC	3 cut(s)	239, 302, 482
BceAI	ACGGC	1 cut(s)	564
BciT130I	CCWGG	2 cut(s)	175, 690
BcnI	CCSGG	1 cut(s)	517
BcoDI	GTCTC	1 cut(s)	806
BfaI	CTAG	3 cut(s)	207, 438, 831
BfmI	CTRYAG	2 cut(s)	542, 816
BisI	GCNGC	3 cut(s)	96, 542, 545
BlsI	GCNGC	3 cut(s)	97, 543, 546
Bme1390I	CCNGG	3 cut(s)	175, 517, 690
Bme18I	GGWCC	2 cut(s)	31, 118
BmgT120I	GGNCC	3 cut(s)	31, 118, 177
BmiI	GGNNCC	4 cut(s)	33, 120, 316, 632
BmrFI	CCNGG	3 cut(s)	175, 517, 690
BmrI	ACTGGG	1 cut(s)	29
BmuI	ACTGGG	1 cut(s)	29
BpuMI	CCSGG	1 cut(s)	517
Bsa29I	ATCGAT	1 cut(s)	396
BsaI	GGTCTC	1 cut(s)	806
BsaJI	CCNNGG	3 cut(s)	174, 604, 689
BsaXI	ACNNNNNCTCC	2 cut(s)	485, 515
Bsc4I	CCNNNNNNNGG	3 cut(s)	308, 610, 715
Bse1I	ACTGG	3 cut(s)	35, 394, 623
BseBI	CCWGG	2 cut(s)	175, 690
BseCI	ATCGAT	1 cut(s)	396
BseDI	CCNNGG	3 cut(s)	174, 604, 689
BseGI	GGATG	1 cut(s)	665
BseLI	CCNNNNNNNGG	3 cut(s)	308, 610, 715
BseMII	CTCAG	2 cut(s)	575, 585
BseNI	ACTGG	3 cut(s)	35, 394, 623
BseXI	GCAGC	2 cut(s)	528, 556
BseYI	CCCAGC	3 cut(s)	547, 609, 713
BshFI	GGCC	3 cut(s)	143, 179, 295
BshVI	ATCGAT	1 cut(s)	396
BsiSI	CCGG	3 cut(s)	83, 125, 516
BslFI	GGGAC	3 cut(s)	564, 626, 731
BslI	CCNNNNNNNGG	3 cut(s)	308, 610, 715
BsmAI	GTCTC	1 cut(s)	806
BsmFI	GGGAC	3 cut(s)	564, 626, 731
BsnI	GGCC	3 cut(s)	143, 179, 295
Bso31I	GGTCTC	1 cut(s)	806
Bsp1407I	TGTACA	1 cut(s)	782
Bsp143I	GATC	2 cut(s)	347, 400
Bsp19I	CCATGG	1 cut(s)	604
BspACI	CCGC	4 cut(s)	95, 98, 122, 798
BspANI	GGCC	3 cut(s)	143, 179, 295
BspCNI	CTCAG	2 cut(s)	574, 586
BspDI	ATCGAT	1 cut(s)	396
BspLI	GGNNCC	4 cut(s)	33, 120, 316, 632
BspMAI	CTGCAG	1 cut(s)	546
BspPI	GGATC	1 cut(s)	355
BspQI	GCTCTTC	1 cut(s)	562
BspTNI	GGTCTC	1 cut(s)	806
BsrGI	TGTACA	1 cut(s)	782
BsrI	ACTGG	3 cut(s)	35, 394, 623
BssECI	CCNNGG	3 cut(s)	174, 604, 689
BssMI	GATC	2 cut(s)	347, 400
BssT1I	CCWWGG	1 cut(s)	604
Bst2UI	CCWGG	2 cut(s)	175, 690
Bst4CI	ACNGT	2 cut(s)	325, 451
Bst6I	CTCTTC	2 cut(s)	560, 562
BstAUI	TGTACA	1 cut(s)	782
BstC8I	GCNNGC	3 cut(s)	137, 141, 355
BstDEI	CTNAG	2 cut(s)	561, 594
BstDSI	CCRYGG	1 cut(s)	604
BstF5I	GGATG	1 cut(s)	665
BstHHI	GCGC	1 cut(s)	342
BstKTI	GATC	2 cut(s)	350, 403
BstMAI	GTCTC	1 cut(s)	806
BstMBI	GATC	2 cut(s)	347, 400
BstMWI	GCNNNNNNNGC	4 cut(s)	176, 292, 337, 585
BstNI	CCWGG	2 cut(s)	175, 690
BstNSI	RCATGY	1 cut(s)	602
BstSCI	CCNGG	3 cut(s)	173, 515, 688
BstSFI	CTRYAG	2 cut(s)	542, 816
BstV1I	GCAGC	2 cut(s)	528, 556
BstX2I	RGATCY	1 cut(s)	347
BstYI	RGATCY	1 cut(s)	347
Bsu15I	ATCGAT	1 cut(s)	396
BsuRI	GGCC	3 cut(s)	143, 179, 295
BsuTUI	ATCGAT	1 cut(s)	396
BtgI	CCRYGG	1 cut(s)	604
BtsCI	GGATG	1 cut(s)	665
BtsIMutI	CAGTG	2 cut(s)	591, 630
Cac8I	GCNNGC	3 cut(s)	137, 141, 355
CaiI	CAGNNNCTG	1 cut(s)	350
CfoI	GCGC	1 cut(s)	342
Cfr13I	GGNCC	3 cut(s)	31, 118, 177
ClaI	ATCGAT	1 cut(s)	396
CseI	GACGC	1 cut(s)	561
Csp6I	GTAC	2 cut(s)	112, 783
CspCI	CAANNNNNGTGG	2 cut(s)	455, 490
CviAII	CATG	3 cut(s)	599, 605, 710
CviQI	GTAC	2 cut(s)	112, 783
DdeI	CTNAG	2 cut(s)	561, 594
DpnI	GATC	2 cut(s)	349, 402
DpnII	GATC	2 cut(s)	347, 400
EaeI	YGGCCR	1 cut(s)	141
Eam1104I	CTCTTC	2 cut(s)	560, 562
EarI	CTCTTC	2 cut(s)	560, 562
EciI	GGCGGA	1 cut(s)	113
Eco130I	CCWWGG	1 cut(s)	604
Eco147I	AGGCCT	1 cut(s)	295
Eco31I	GGTCTC	1 cut(s)	806
Eco47I	GGWCC	2 cut(s)	31, 118
Eco57I	CTGAAG	2 cut(s)	446, 630
EcoRII	CCWGG	2 cut(s)	173, 688
EcoT14I	CCWWGG	1 cut(s)	604
ErhI	CCWWGG	1 cut(s)	604
FaeI	CATG	3 cut(s)	602, 608, 713
FaqI	GGGAC	3 cut(s)	564, 626, 731
FatI	CATG	3 cut(s)	598, 604, 709
FauI	CCCGC	1 cut(s)	129
Fnu4HI	GCNGC	3 cut(s)	96, 542, 545
FokI	GGATG	1 cut(s)	652
Fsp4HI	GCNGC	3 cut(s)	96, 542, 545
FspBI	CTAG	3 cut(s)	207, 438, 831
GlaI	GCGC	1 cut(s)	341
GluI	GCNGC	3 cut(s)	96, 542, 545
GsaI	CCCAGC	3 cut(s)	551, 613, 717
HaeIII	GGCC	3 cut(s)	143, 179, 295
HapII	CCGG	3 cut(s)	83, 125, 516
HgaI	GACGC	1 cut(s)	561
HhaI	GCGC	1 cut(s)	342
Hin1II	CATG	3 cut(s)	602, 608, 713
Hin6I	GCGC	1 cut(s)	340
HinP1I	GCGC	1 cut(s)	340
HinfI	GANTC	7 cut(s)	151, 194, 393, 415, 434, 700, 812
HpaII	CCGG	3 cut(s)	83, 125, 516
HphI	GGTGA	1 cut(s)	254
Hpy166II	GTNNAC	3 cut(s)	31, 229, 785
Hpy188I	TCNGA	4 cut(s)	219, 564, 649, 670
Hpy188III	TCNNGA	2 cut(s)	438, 763
Hpy8I	GTNNAC	3 cut(s)	31, 229, 785
HpyAV	CCTTC	1 cut(s)	644
HpyCH4III	ACNGT	2 cut(s)	325, 451
HpyCH4V	TGCA	6 cut(s)	55, 135, 455, 544, 588, 743
HpyF10VI	GCNNNNNNNGC	4 cut(s)	176, 292, 337, 585
HpyF3I	CTNAG	2 cut(s)	561, 594
Hsp92II	CATG	3 cut(s)	602, 608, 713
HspAI	GCGC	1 cut(s)	340
Kzo9I	GATC	2 cut(s)	347, 400
LguI	GCTCTTC	1 cut(s)	562
LmnI	GCTCC	1 cut(s)	314
Lsp1109I	GCAGC	2 cut(s)	528, 556
MaeI	CTAG	3 cut(s)	207, 438, 831
MaeIII	GTNAC	1 cut(s)	745
MalI	GATC	2 cut(s)	349, 402
MboI	GATC	2 cut(s)	347, 400
MboII	GAAGA	5 cut(s)	417, 443, 452, 549, 577
MflI	RGATCY	1 cut(s)	347
MlsI	TGGCCA	1 cut(s)	143
MluCI	AATT	5 cut(s)	200, 211, 256, 384, 836
MluNI	TGGCCA	1 cut(s)	143
MlyI	GAGTC	2 cut(s)	203, 806
MmeI	TCCRAC	1 cut(s)	658
MnlI	CCTC	8 cut(s)	60, 102, 276, 475, 487, 561, 621, 673
Mox20I	TGGCCA	1 cut(s)	143
MscI	TGGCCA	1 cut(s)	143
MseI	TTAA	3 cut(s)	24, 680, 756
MslI	CAYNNNNRTG	3 cut(s)	603, 670, 708
Msp20I	TGGCCA	1 cut(s)	143
MspA1I	CMGCKG	1 cut(s)	547
MspI	CCGG	3 cut(s)	83, 125, 516
MspR9I	CCNGG	3 cut(s)	175, 517, 690
MvaI	CCWGG	2 cut(s)	175, 690
MwoI	GCNNNNNNNGC	4 cut(s)	176, 292, 337, 585
NciI	CCSGG	1 cut(s)	517
NcoI	CCATGG	1 cut(s)	604
NdeII	GATC	2 cut(s)	347, 400
NlaIII	CATG	3 cut(s)	602, 608, 713
NlaIV	GGNNCC	4 cut(s)	33, 120, 316, 632
NspI	RCATGY	1 cut(s)	602
PceI	AGGCCT	1 cut(s)	295
PciSI	GCTCTTC	1 cut(s)	562
PcsI	WCGNNNNNNNCGW	1 cut(s)	160
PfeI	GAWTC	5 cut(s)	151, 393, 415, 434, 700
PkrI	GCNGC	3 cut(s)	97, 543, 546
PleI	GAGTC	2 cut(s)	202, 806
PpsI	GAGTC	2 cut(s)	202, 806
Psp6I	CCWGG	2 cut(s)	173, 688
PspFI	CCCAGC	3 cut(s)	547, 609, 713
PspGI	CCWGG	2 cut(s)	173, 688
PspN4I	GGNNCC	4 cut(s)	33, 120, 316, 632
PspPI	GGNCC	3 cut(s)	31, 118, 177
PstI	CTGCAG	1 cut(s)	546
PstNI	CAGNNNCTG	1 cut(s)	350
PsuI	RGATCY	1 cut(s)	347
PvuII	CAGCTG	1 cut(s)	547
RsaI	GTAC	2 cut(s)	113, 784
RsaNI	GTAC	2 cut(s)	112, 783
RseI	CAYNNNNRTG	3 cut(s)	603, 670, 708
SapI	GCTCTTC	1 cut(s)	562
SaqAI	TTAA	3 cut(s)	24, 680, 756
SatI	GCNGC	3 cut(s)	96, 542, 545
Sau3AI	GATC	2 cut(s)	347, 400
Sau96I	GGNCC	3 cut(s)	31, 118, 177
SchI	GAGTC	2 cut(s)	203, 806
ScrFI	CCNGG	3 cut(s)	175, 517, 690
SfcI	CTRYAG	2 cut(s)	542, 816
SinI	GGWCC	2 cut(s)	31, 118
SmiMI	CAYNNNNRTG	3 cut(s)	603, 670, 708
Sse9I	AATT	5 cut(s)	200, 211, 256, 384, 836
SseBI	AGGCCT	1 cut(s)	295
SsiI	CCGC	4 cut(s)	95, 98, 122, 798
SspMI	CTAG	3 cut(s)	207, 438, 831
StuI	AGGCCT	1 cut(s)	295
StyD4I	CCNGG	3 cut(s)	173, 515, 688
StyI	CCWWGG	1 cut(s)	604
TaaI	ACNGT	2 cut(s)	325, 451
TaqI	TCGA	5 cut(s)	197, 396, 403, 498, 764
TasI	AATT	5 cut(s)	200, 211, 256, 384, 836
TatI	WGTACW	1 cut(s)	782
TauI	GCSGC	1 cut(s)	98
TfiI	GAWTC	5 cut(s)	151, 393, 415, 434, 700
Tru1I	TTAA	3 cut(s)	24, 680, 756
Tru9I	TTAA	3 cut(s)	24, 680, 756
TscAI	CASTG	2 cut(s)	598, 630
TseI	GCWGC	2 cut(s)	541, 544
TspDTI	ATGAA	1 cut(s)	164
TspRI	CASTG	2 cut(s)	598, 630
VpaK11BI	GGWCC	2 cut(s)	31, 118
XapI	RAATTY	2 cut(s)	256, 836
XbaI	TCTAGA	1 cut(s)	437
XceI	RCATGY	1 cut(s)	602
XspI	CTAG	3 cut(s)	207, 438, 831

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.