Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001374

Physical Location & Seq

Genomic Coordinates Forward (+)

34430483 .. 34443685

Gene Structure 13203 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G026950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGATGACGAAAATGCCGATCAACAACTGAAATTGTATTCCTACTACATGAGCTCTTGCGCTTACCGTGTCCGAATTGCCCTCAACCTCAAAGGGCTCAAATACGAGTACAAAGCTGTAAACTTGTTGAAGGGAGAACAGTTTAGTGCTGAGTTTAGAAAGGTGAATCCTATCTGCTGTGTGCCGGTACTTGTGAATGGGGACATAGCTGTTTCCGATTCATTTGCCATATTATTGGCTGCAAATATTGTTTGCTCAAGCATACAGCCCCTTCTGAATCTGGCAGTACTGAATTATATAGAAGAAAGGGTTAGTCCAGATGCAAAAATTGAATGGGCTAAAGTTCATATTGGGAAAGGTTTTGCAGATCTACTGAAAAACTATGCAGGAAGATATGCAATTGGAAAAATGATGTTTCTTTTGCAGATTTGTTCCTGGCGCCCCAGATTGATGCATCTTTTTTCAAGGTTCAATCTAGACATGACCCAGTTCCCCCTTTTGTCCAGGTTGCATGAGGCATACAATGAGACACCAGCATTCATAGATGCTAGGCCGGATAAGCAGCCAGATGCTACTTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006725 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016034 GO:0016054 GO:0016853 GO:0016859 GO:0018958 GO:0019336 GO:0019439 GO:0019748 GO:0019752 GO:0032787 GO:0042221 GO:0043436 GO:0044237 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0050896 GO:0071704 GO:0072329 GO:0098754 GO:1901360 GO:1901361 GO:1901575 GO:1901615 GO:1901616 GO:1901999 GO:1902000

KEGG Pathways

Metabolic & Signaling

ko00350 ko00643 ko01100 ko01120 map00350 map00643 map01100 map01120

Pfam Domains

Protein Families

GST_C GST_C_2 GST_C_3 GST_N GST_N_3

Protein Analysis

193

Amino Acids

21.96

Weight (kDa)

8.22

Isoelectric Point (pI)

40.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	9 - 78	1.2e-12	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	12 - 78	8.6e-10	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	18 - 79	3.4e-12	Glutathione S-transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02380 AT2G02390 AT2G02390 AT2G02390 AT2G02390
fragaria_vesca	FvH4_5g27160
malus_domestica	MD08G1250500.v1.1 MD15G1445700.v1.1
prunus_persica	Prupe.1G587700_v2.0.a1 Prupe.1G587700_v2.0.a1
pyrus_communis	pycom08g21730 pycom15g39250
rosa_chinensis	RchiOBHm_Chr7g0218201 RchiOBHm_Chr7g0218231 RchiOBHm_Chr7g0218251
rosa_laevigata	RLG00000002386 RLG00000002388 RLG00000002390
rosa_multiflora	Rmu_sc0004956.1_g000003 Rmu_sc0008593.1_g000004 Rmu_sc0008593.1_g000008 Rmu_sc0011666.1_g000005 Rmu_sc0021950.1_g000001 Rmu_sc0024798.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032070 Rroxscaffold_3G00241200 Rroxscaffold_3G00241210
rosa_rugosa	Rorug07G0174800 Rorug07G0174900 Rorug07G0175000 Rorug07G0175200 Rorug07G0175300 Rorug07G0175400 Rorug07G0175500 Rorug07G0175500 Rorug07G0175600 Rorug07G0175700 Rorug07G0175800
rosa_samantha	Rh7AG304100 Rh7AG304200 Rh7BG308500 Rh7BG308600 Rh7BG308700 Rh7BG308800 Rh7CG322500 Rh7CG322700 Rh7CG334300 Rh7DG304300 Rh7DG316400
rosa_wichuraiana	Rw7G025830 Rw7G026860 Rw7G026940 Rw7G026950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	438
AcyI	GRCGYC	1 cut(s)	439
AfaI	GTAC	3 cut(s)	110, 189, 288
AgsI	TTSAA	4 cut(s)	130, 332, 465, 472
AjnI	CCWGG	2 cut(s)	434, 503
AluBI	AGCT	3 cut(s)	54, 116, 209
AluI	AGCT	3 cut(s)	54, 116, 209
Alw21I	GWGCWC	1 cut(s)	56
Alw26I	GTCTC	1 cut(s)	521
AoxI	GGCC	1 cut(s)	551
ApeKI	GCWGC	2 cut(s)	239, 562
AspLEI	GCGC	2 cut(s)	62, 441
AsuHPI	GGTGA	1 cut(s)	175
BanI	GGYRCC	1 cut(s)	438
BanII	GRGCYC	2 cut(s)	56, 99
Bbv12I	GWGCWC	1 cut(s)	56
BbvI	GCAGC	2 cut(s)	226, 574
BcgI	CGANNNNNNTGC	2 cut(s)	206, 240
BciT130I	CCWGG	2 cut(s)	436, 505
BcoDI	GTCTC	1 cut(s)	521
BfaI	CTAG	2 cut(s)	476, 549
BfoI	RGCGCY	1 cut(s)	442
BglII	AGATCT	1 cut(s)	367
BisI	GCNGC	2 cut(s)	240, 563
BlsI	GCNGC	2 cut(s)	241, 564
BmcAI	AGTACT	1 cut(s)	288
Bme1390I	CCNGG	2 cut(s)	436, 505
BmiI	GGNNCC	1 cut(s)	440
BmrFI	CCNGG	2 cut(s)	436, 505
BmrI	ACTGGG	1 cut(s)	481
BmsI	GCATC	5 cut(s)	310, 441, 463, 535, 559
BmuI	ACTGGG	1 cut(s)	481
BpuEI	CTTGAG	1 cut(s)	241
BsaHI	GRCGYC	1 cut(s)	439
Bse118I	RCCGGY	1 cut(s)	184
Bse1I	ACTGG	1 cut(s)	487
BseBI	CCWGG	2 cut(s)	436, 505
BseGI	GGATG	1 cut(s)	10
BseMII	CTCAG	1 cut(s)	141
BseNI	ACTGG	1 cut(s)	487
BseXI	GCAGC	2 cut(s)	226, 574
BshFI	GGCC	1 cut(s)	553
BshNI	GGYRCC	1 cut(s)	438
BsiHKAI	GWGCWC	1 cut(s)	56
BsiSI	CCGG	2 cut(s)	185, 554
BslFI	GGGAC	1 cut(s)	215
BsmAI	GTCTC	1 cut(s)	521
BsmFI	GGGAC	1 cut(s)	215
BsmI	GAATGC	1 cut(s)	536
BsnI	GGCC	1 cut(s)	553
Bsp1286I	GDGCHC	2 cut(s)	56, 99
Bsp143I	GATC	2 cut(s)	19, 367
BspANI	GGCC	1 cut(s)	553
BspCNI	CTCAG	1 cut(s)	142
BspLI	GGNNCC	1 cut(s)	440
BspT107I	GGYRCC	1 cut(s)	438
BsrFI	RCCGGY	1 cut(s)	184
BsrI	ACTGG	1 cut(s)	487
BssAI	RCCGGY	1 cut(s)	184
BssMI	GATC	2 cut(s)	19, 367
BssNI	GRCGYC	1 cut(s)	439
Bst2UI	CCWGG	2 cut(s)	436, 505
Bst4CI	ACNGT	2 cut(s)	68, 141
BstACI	GRCGYC	1 cut(s)	439
BstDEI	CTNAG	1 cut(s)	150
BstF5I	GGATG	1 cut(s)	10
BstH2I	RGCGCY	1 cut(s)	442
BstHHI	GCGC	2 cut(s)	62, 441
BstKTI	GATC	2 cut(s)	22, 370
BstMAI	GTCTC	1 cut(s)	521
BstMBI	GATC	2 cut(s)	19, 367
BstMWI	GCNNNNNNNGC	1 cut(s)	559
BstNI	CCWGG	2 cut(s)	436, 505
BstSCI	CCNGG	2 cut(s)	434, 503
BstV1I	GCAGC	2 cut(s)	226, 574
BstX2I	RGATCY	1 cut(s)	367
BstXI	CCANNNNNNTGG	1 cut(s)	235
BstYI	RGATCY	1 cut(s)	367
BsuRI	GGCC	1 cut(s)	553
BtsCI	GGATG	1 cut(s)	10
CfoI	GCGC	2 cut(s)	62, 441
Cfr10I	RCCGGY	1 cut(s)	184
Csp6I	GTAC	3 cut(s)	109, 188, 287
CviAII	CATG	3 cut(s)	49, 481, 512
CviJI	RGCY	9 cut(s)	54, 97, 116, 209, 239, 268, 338, 553, 565
CviKI_1	RGCY	9 cut(s)	54, 97, 116, 209, 239, 268, 338, 553, 565
CviQI	GTAC	3 cut(s)	109, 188, 287
DdeI	CTNAG	1 cut(s)	150
DinI	GGCGCC	1 cut(s)	440
DpnI	GATC	2 cut(s)	21, 369
DpnII	GATC	2 cut(s)	19, 367
Ecl136II	GAGCTC	1 cut(s)	54
Eco24I	GRGCYC	2 cut(s)	56, 99
Eco53kI	GAGCTC	1 cut(s)	54
EcoICRI	GAGCTC	1 cut(s)	54
EcoRII	CCWGG	2 cut(s)	434, 503
EcoT22I	ATGCAT	1 cut(s)	456
EcoT38I	GRGCYC	2 cut(s)	56, 99
EgeI	GGCGCC	1 cut(s)	440
EheI	GGCGCC	1 cut(s)	440
FaeI	CATG	3 cut(s)	52, 484, 515
FaqI	GGGAC	1 cut(s)	215
FatI	CATG	3 cut(s)	48, 480, 511
Fnu4HI	GCNGC	2 cut(s)	240, 563
FokI	GGATG	1 cut(s)	17
FriOI	GRGCYC	2 cut(s)	56, 99
Fsp4HI	GCNGC	2 cut(s)	240, 563
FspBI	CTAG	2 cut(s)	476, 549
GlaI	GCGC	2 cut(s)	61, 440
GluI	GCNGC	2 cut(s)	240, 563
HaeII	RGCGCY	1 cut(s)	442
HaeIII	GGCC	1 cut(s)	553
HapII	CCGG	2 cut(s)	185, 554
HhaI	GCGC	2 cut(s)	62, 441
Hin1I	GRCGYC	1 cut(s)	439
Hin1II	CATG	3 cut(s)	52, 484, 515
Hin6I	GCGC	2 cut(s)	60, 439
HinP1I	GCGC	2 cut(s)	60, 439
HinfI	GANTC	3 cut(s)	166, 218, 277
HpaII	CCGG	2 cut(s)	185, 554
HphI	GGTGA	1 cut(s)	175
Hpy166II	GTNNAC	1 cut(s)	121
Hpy188I	TCNGA	3 cut(s)	74, 217, 276
Hpy188III	TCNNGA	2 cut(s)	317, 476
Hpy8I	GTNNAC	1 cut(s)	121
HpyAV	CCTTC	2 cut(s)	124, 281
HpyCH4III	ACNGT	2 cut(s)	68, 141
HpyCH4V	TGCA	8 cut(s)	242, 323, 365, 386, 398, 424, 454, 511
HpyF10VI	GCNNNNNNNGC	1 cut(s)	559
HpyF3I	CTNAG	1 cut(s)	150
Hsp92I	GRCGYC	1 cut(s)	439
Hsp92II	CATG	3 cut(s)	52, 484, 515
HspAI	GCGC	2 cut(s)	60, 439
KasI	GGCGCC	1 cut(s)	438
Kzo9I	GATC	2 cut(s)	19, 367
Lsp1109I	GCAGC	2 cut(s)	226, 574
LweI	GCATC	5 cut(s)	310, 441, 463, 535, 559
MaeI	CTAG	2 cut(s)	476, 549
MalI	GATC	2 cut(s)	21, 369
MboI	GATC	2 cut(s)	19, 367
MboII	GAAGA	2 cut(s)	314, 402
MfeI	CAATTG	1 cut(s)	399
MflI	RGATCY	1 cut(s)	367
MhlI	GDGCHC	2 cut(s)	56, 99
MluCI	AATT	5 cut(s)	32, 75, 292, 327, 399
Mly113I	GGCGCC	1 cut(s)	439
MnlI	CCTC	3 cut(s)	92, 98, 508
Mph1103I	ATGCAT	1 cut(s)	456
MspI	CCGG	2 cut(s)	185, 554
MspR9I	CCNGG	2 cut(s)	436, 505
MunI	CAATTG	1 cut(s)	399
Mva1269I	GAATGC	1 cut(s)	536
MvaI	CCWGG	2 cut(s)	436, 505
MwoI	GCNNNNNNNGC	1 cut(s)	559
NarI	GGCGCC	1 cut(s)	439
NdeII	GATC	2 cut(s)	19, 367
NlaIII	CATG	3 cut(s)	52, 484, 515
NlaIV	GGNNCC	1 cut(s)	440
NsiI	ATGCAT	1 cut(s)	456
PcsI	WCGNNNNNNNCGW	1 cut(s)	15
PctI	GAATGC	1 cut(s)	536
PfeI	GAWTC	3 cut(s)	166, 218, 277
PkrI	GCNGC	2 cut(s)	241, 564
PluTI	GGCGCC	1 cut(s)	442
Psp124BI	GAGCTC	1 cut(s)	56
Psp6I	CCWGG	2 cut(s)	434, 503
PspGI	CCWGG	2 cut(s)	434, 503
PspN4I	GGNNCC	1 cut(s)	440
PsuI	RGATCY	1 cut(s)	367
RsaI	GTAC	3 cut(s)	110, 189, 288
RsaNI	GTAC	3 cut(s)	109, 188, 287
SacI	GAGCTC	1 cut(s)	56
SatI	GCNGC	2 cut(s)	240, 563
Sau3AI	GATC	2 cut(s)	19, 367
ScaI	AGTACT	1 cut(s)	288
ScrFI	CCNGG	2 cut(s)	436, 505
SduI	GDGCHC	2 cut(s)	56, 99
SetI	ASST	8 cut(s)	56, 90, 118, 165, 211, 361, 470, 509
SfaNI	GCATC	5 cut(s)	310, 441, 463, 535, 559
SfoI	GGCGCC	1 cut(s)	440
SmlI	CTYRAG	1 cut(s)	256
SmoI	CTYRAG	1 cut(s)	256
Sse9I	AATT	5 cut(s)	32, 75, 292, 327, 399
SspDI	GGCGCC	1 cut(s)	438
SspI	AATATT	1 cut(s)	247
SspMI	CTAG	2 cut(s)	476, 549
SstI	GAGCTC	1 cut(s)	56
StyD4I	CCNGG	2 cut(s)	434, 503
TaaI	ACNGT	2 cut(s)	68, 141
TasI	AATT	5 cut(s)	32, 75, 292, 327, 399
TatI	WGTACW	2 cut(s)	108, 286
TfiI	GAWTC	3 cut(s)	166, 218, 277
TseI	GCWGC	2 cut(s)	239, 562
TspDTI	ATGAA	3 cut(s)	210, 335, 529
XbaI	TCTAGA	1 cut(s)	475
XspI	CTAG	2 cut(s)	476, 549
ZrmI	AGTACT	1 cut(s)	288
Zsp2I	ATGCAT	1 cut(s)	456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.