Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0024798.1

Orthogroup ID

OG0001374

Physical Location & Seq

Genomic Coordinates Reverse (-)

5204 .. 7858

Gene Structure 2655 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0024798.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

atggcgactgctagtgacaacaatggcgatcaacaactgaaattgtattcctactacaagagctcttgctctttccgtgtccgaattgccctcaacctcaaagggctcaaatacgagtacaaagctgtaaacttgttgaagggagaacagtatagtcctgagtttagaaagctcaatccgatcggccatgtgccggtgcttgtggatggggacttagctgtttccgattcatttgccattttattgtatttggaagaaaagtacccacaacatcggttgttgcctaaagaccttcagcgaaaggccattaacttccacgtcagtctcgtgtcaaggatattggaaagggttagtccagatgcgaaaattgaattggctaaagttcatactgagaaaggttttgcagcacttgaagatctactgaaaaactatgcaggaagatatgcaactggagatgaagtttgttttgcagatttgtttttggcgccccagattcatgcagcttttaaatggttcaatctagacatggtactactcatttcttgtgccagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006725 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016034 GO:0016054 GO:0016853 GO:0016859 GO:0018958 GO:0019336 GO:0019439 GO:0019748 GO:0019752 GO:0032787 GO:0042221 GO:0043436 GO:0044237 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0050896 GO:0071704 GO:0072329 GO:0098754 GO:1901360 GO:1901361 GO:1901575 GO:1901615 GO:1901616 GO:1901999 GO:1902000

KEGG Pathways

Metabolic & Signaling

ko00350 ko00643 ko01100 ko01120 map00350 map00643 map01100 map01120

Pfam Domains

Protein Families

GST_C GST_C_2 GST_C_3 GST_N GST_N_3

Protein Analysis

184

Amino Acids

20.83

Weight (kDa)

8.34

Isoelectric Point (pI)

33.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02380 AT2G02390 AT2G02390 AT2G02390 AT2G02390
fragaria_vesca	FvH4_5g27160
malus_domestica	MD08G1250500.v1.1 MD15G1445700.v1.1
prunus_persica	Prupe.1G587700_v2.0.a1 Prupe.1G587700_v2.0.a1
pyrus_communis	pycom08g21730 pycom15g39250
rosa_chinensis	RchiOBHm_Chr7g0218201 RchiOBHm_Chr7g0218231 RchiOBHm_Chr7g0218251
rosa_laevigata	RLG00000002386 RLG00000002388 RLG00000002390
rosa_multiflora	Rmu_sc0004956.1_g000003 Rmu_sc0008593.1_g000004 Rmu_sc0008593.1_g000008 Rmu_sc0011666.1_g000005 Rmu_sc0021950.1_g000001 Rmu_sc0024798.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032070 Rroxscaffold_3G00241200 Rroxscaffold_3G00241210
rosa_rugosa	Rorug07G0174800 Rorug07G0174900 Rorug07G0175000 Rorug07G0175200 Rorug07G0175300 Rorug07G0175400 Rorug07G0175500 Rorug07G0175500 Rorug07G0175600 Rorug07G0175700 Rorug07G0175800
rosa_samantha	Rh7AG304100 Rh7AG304200 Rh7BG308500 Rh7BG308600 Rh7BG308700 Rh7BG308800 Rh7CG322500 Rh7CG322700 Rh7CG334300 Rh7DG304300 Rh7DG316400
rosa_wichuraiana	Rw7G025830 Rw7G026860 Rw7G026940 Rw7G026950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	484
AcoI	YGGCCR	1 cut(s)	184
AcuI	CTGAAG	1 cut(s)	278
AcyI	GRCGYC	1 cut(s)	485
AfaI	GTAC	3 cut(s)	119, 263, 531
AfiI	CCNNNNNNNGG	1 cut(s)	193
AgsI	TTSAA	4 cut(s)	139, 371, 413, 517
AjiI	CACGTC	1 cut(s)	319
AjuI	GAANNNNNNNTTGG	2 cut(s)	356, 388
AluBI	AGCT	5 cut(s)	63, 125, 172, 218, 503
AluI	AGCT	5 cut(s)	63, 125, 172, 218, 503
Alw21I	GWGCWC	1 cut(s)	65
Alw26I	GTCTC	1 cut(s)	329
AoxI	GGCC	2 cut(s)	184, 303
ApeKI	GCWGC	2 cut(s)	404, 500
AspLEI	GCGC	1 cut(s)	487
BanI	GGYRCC	1 cut(s)	484
BanII	GRGCYC	2 cut(s)	65, 108
BauI	CACGAG	1 cut(s)	326
Bbv12I	GWGCWC	1 cut(s)	65
BbvI	GCAGC	2 cut(s)	416, 512
BccI	CCATC	1 cut(s)	200
BcgI	CGANNNNNNTGC	2 cut(s)	215, 249
BcoDI	GTCTC	1 cut(s)	329
BfaI	CTAG	2 cut(s)	12, 521
BfoI	RGCGCY	1 cut(s)	488
BglII	AGATCT	1 cut(s)	415
BisI	GCNGC	2 cut(s)	405, 501
BlsI	GCNGC	2 cut(s)	406, 502
BmgBI	CACGTC	1 cut(s)	319
BmiI	GGNNCC	1 cut(s)	486
BmsI	GCATC	1 cut(s)	349
BpmI	CTGGAG	1 cut(s)	471
BsaHI	GRCGYC	1 cut(s)	485
BsaXI	ACNNNNNCTCC	2 cut(s)	444, 474
Bsc4I	CCNNNNNNNGG	1 cut(s)	193
Bse118I	RCCGGY	1 cut(s)	193
Bse1I	ACTGG	2 cut(s)	454, 549
BseGI	GGATG	1 cut(s)	211
BseLI	CCNNNNNNNGG	1 cut(s)	193
BseMII	CTCAG	2 cut(s)	150, 381
BseNI	ACTGG	2 cut(s)	454, 549
BseXI	GCAGC	2 cut(s)	416, 512
Bsh1285I	CGRYCG	1 cut(s)	183
BshFI	GGCC	2 cut(s)	186, 305
BshNI	GGYRCC	1 cut(s)	484
BsiEI	CGRYCG	1 cut(s)	183
BsiHKAI	GWGCWC	1 cut(s)	65
BsiSI	CCGG	1 cut(s)	194
BslFI	GGGAC	1 cut(s)	224
BslI	CCNNNNNNNGG	1 cut(s)	193
BsmAI	GTCTC	1 cut(s)	329
BsmFI	GGGAC	1 cut(s)	224
BsnI	GGCC	2 cut(s)	186, 305
Bsp1286I	GDGCHC	2 cut(s)	65, 108
Bsp143I	GATC	3 cut(s)	28, 180, 415
BspANI	GGCC	2 cut(s)	186, 305
BspCNI	CTCAG	2 cut(s)	151, 382
BspLI	GGNNCC	1 cut(s)	486
BspT107I	GGYRCC	1 cut(s)	484
BsrFI	RCCGGY	1 cut(s)	193
BsrI	ACTGG	2 cut(s)	454, 549
BssAI	RCCGGY	1 cut(s)	193
BssMI	GATC	3 cut(s)	28, 180, 415
BssNI	GRCGYC	1 cut(s)	485
BssSI	CACGAG	1 cut(s)	326
Bst2BI	CACGAG	1 cut(s)	326
Bst4CI	ACNGT	1 cut(s)	150
BstACI	GRCGYC	1 cut(s)	485
BstDEI	CTNAG	3 cut(s)	159, 214, 390
BstF5I	GGATG	1 cut(s)	211
BstH2I	RGCGCY	1 cut(s)	488
BstHHI	GCGC	1 cut(s)	487
BstKTI	GATC	3 cut(s)	31, 183, 418
BstMAI	GTCTC	1 cut(s)	329
BstMBI	GATC	3 cut(s)	28, 180, 415
BstMCI	CGRYCG	1 cut(s)	183
BstV1I	GCAGC	2 cut(s)	416, 512
BstX2I	RGATCY	1 cut(s)	415
BstYI	RGATCY	1 cut(s)	415
BsuRI	GGCC	2 cut(s)	186, 305
BtrI	CACGTC	1 cut(s)	319
BtsCI	GGATG	1 cut(s)	211
CfoI	GCGC	1 cut(s)	487
Cfr10I	RCCGGY	1 cut(s)	193
Csp6I	GTAC	3 cut(s)	118, 262, 530
CviAII	CATG	3 cut(s)	188, 497, 526
CviJI	RGCY	9 cut(s)	63, 106, 125, 172, 186, 218, 305, 377, 503
CviKI_1	RGCY	9 cut(s)	63, 106, 125, 172, 186, 218, 305, 377, 503
CviQI	GTAC	3 cut(s)	118, 262, 530
DdeI	CTNAG	3 cut(s)	159, 214, 390
DinI	GGCGCC	1 cut(s)	486
DpnI	GATC	3 cut(s)	30, 182, 417
DpnII	GATC	3 cut(s)	28, 180, 415
DraI	TTTAAA	1 cut(s)	508
EaeI	YGGCCR	1 cut(s)	184
Ecl136II	GAGCTC	1 cut(s)	63
Eco24I	GRGCYC	2 cut(s)	65, 108
Eco53kI	GAGCTC	1 cut(s)	63
Eco57I	CTGAAG	1 cut(s)	278
EcoICRI	GAGCTC	1 cut(s)	63
EcoT38I	GRGCYC	2 cut(s)	65, 108
EgeI	GGCGCC	1 cut(s)	486
EheI	GGCGCC	1 cut(s)	486
FaeI	CATG	3 cut(s)	191, 500, 529
FaiI	YATR	7 cut(s)	153, 189, 387, 432, 444, 498, 527
FaqI	GGGAC	1 cut(s)	224
FatI	CATG	3 cut(s)	187, 496, 525
Fnu4HI	GCNGC	2 cut(s)	405, 501
FokI	GGATG	1 cut(s)	218
FriOI	GRGCYC	2 cut(s)	65, 108
Fsp4HI	GCNGC	2 cut(s)	405, 501
FspBI	CTAG	2 cut(s)	12, 521
GlaI	GCGC	1 cut(s)	486
GluI	GCNGC	2 cut(s)	405, 501
GsuI	CTGGAG	1 cut(s)	471
HaeII	RGCGCY	1 cut(s)	488
HaeIII	GGCC	2 cut(s)	186, 305
HapII	CCGG	1 cut(s)	194
HhaI	GCGC	1 cut(s)	487
Hin1I	GRCGYC	1 cut(s)	485
Hin1II	CATG	3 cut(s)	191, 500, 529
Hin6I	GCGC	1 cut(s)	485
HinP1I	GCGC	1 cut(s)	485
HinfI	GANTC	2 cut(s)	227, 493
HpaII	CCGG	1 cut(s)	194
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	3 cut(s)	83, 180, 226
Hpy188III	TCNNGA	3 cut(s)	158, 356, 521
Hpy8I	GTNNAC	1 cut(s)	130
HpyAV	CCTTC	2 cut(s)	133, 302
HpyCH4III	ACNGT	1 cut(s)	150
HpyCH4IV	ACGT	1 cut(s)	318
HpyCH4V	TGCA	5 cut(s)	404, 434, 446, 470, 500
HpyF3I	CTNAG	3 cut(s)	159, 214, 390
HpySE526I	ACGT	1 cut(s)	318
Hsp92I	GRCGYC	1 cut(s)	485
Hsp92II	CATG	3 cut(s)	191, 500, 529
HspAI	GCGC	1 cut(s)	485
KasI	GGCGCC	1 cut(s)	484
Kzo9I	GATC	3 cut(s)	28, 180, 415
LpnPI	CCDG	6 cut(s)	171, 207, 369, 420, 435, 503
Lsp1109I	GCAGC	2 cut(s)	416, 512
LweI	GCATC	1 cut(s)	349
MaeI	CTAG	2 cut(s)	12, 521
MaeII	ACGT	1 cut(s)	318
MaeIII	GTNAC	1 cut(s)	14
MalI	GATC	3 cut(s)	30, 182, 417
MboI	GATC	3 cut(s)	28, 180, 415
MboII	GAAGA	3 cut(s)	266, 425, 450
MflI	RGATCY	1 cut(s)	415
MhlI	GDGCHC	2 cut(s)	65, 108
MluCI	AATT	4 cut(s)	41, 84, 366, 371
Mly113I	GGCGCC	1 cut(s)	485
MnlI	CCTC	2 cut(s)	101, 107
MseI	TTAA	3 cut(s)	309, 507, 553
MspI	CCGG	1 cut(s)	194
NarI	GGCGCC	1 cut(s)	485
NdeII	GATC	3 cut(s)	28, 180, 415
NlaIII	CATG	3 cut(s)	191, 500, 529
NlaIV	GGNNCC	1 cut(s)	486
NmuCI	GTSAC	1 cut(s)	14
PcsI	WCGNNNNNNNCGW	1 cut(s)	324
PfeI	GAWTC	2 cut(s)	227, 493
PkrI	GCNGC	2 cut(s)	406, 502
Ple19I	CGATCG	1 cut(s)	183
PluTI	GGCGCC	1 cut(s)	488
Psp124BI	GAGCTC	1 cut(s)	65
PspN4I	GGNNCC	1 cut(s)	486
PsuI	RGATCY	1 cut(s)	415
PvuI	CGATCG	1 cut(s)	183
RsaI	GTAC	3 cut(s)	119, 263, 531
RsaNI	GTAC	3 cut(s)	118, 262, 530
SacI	GAGCTC	1 cut(s)	65
SaqAI	TTAA	3 cut(s)	309, 507, 553
SatI	GCNGC	2 cut(s)	405, 501
Sau3AI	GATC	3 cut(s)	28, 180, 415
SduI	GDGCHC	2 cut(s)	65, 108
SetI	ASST	9 cut(s)	65, 99, 127, 174, 220, 294, 321, 400, 505
SfaNI	GCATC	1 cut(s)	349
SfoI	GGCGCC	1 cut(s)	486
Sse9I	AATT	4 cut(s)	41, 84, 366, 371
SspDI	GGCGCC	1 cut(s)	484
SspMI	CTAG	2 cut(s)	12, 521
SstI	GAGCTC	1 cut(s)	65
TaaI	ACNGT	1 cut(s)	150
TaiI	ACGT	1 cut(s)	321
TasI	AATT	4 cut(s)	41, 84, 366, 371
TatI	WGTACW	1 cut(s)	117
TfiI	GAWTC	2 cut(s)	227, 493
Tru1I	TTAA	3 cut(s)	309, 507, 553
Tru9I	TTAA	3 cut(s)	309, 507, 553
TseFI	GTSAC	1 cut(s)	14
TseI	GCWGC	2 cut(s)	404, 500
Tsp45I	GTSAC	1 cut(s)	14
TspDTI	ATGAA	4 cut(s)	219, 374, 471, 485
TspGWI	ACGGA	1 cut(s)	65
XbaI	TCTAGA	1 cut(s)	520
XspI	CTAG	2 cut(s)	12, 521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.