Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011666.1

Orthogroup ID

OG0001374

Physical Location & Seq

Genomic Coordinates Forward (+)

20287 .. 22008

Gene Structure 1722 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011666.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

atggcgactgctagtgatcaacaactgaaattgtattcctgctacatgagctcttgtgcttaccgtgtccgaattgccctcaacctcaaagggctcaaatacgagtacagagctgtaaacttgttgaagggagaacagtttagtcctgagtttagaaagctcaatccgatcggccatgtgccggtgcttgtggatggggacttggctgtttccgattcatttgccattttattgtatttggaagaaaagtacccacaacatccgttgttgcctaaagaccttcagcgaaaggccattaacttccaggctgcaaatattgtttgctcaagcatacagccccttcagaatagggcagtactgaattatatagaagaaagggttagtccagatgcgaaaattgaattggctaaagttcatactgagaaaggttttgcaggtaatctttggaaaaactattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006725 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016034 GO:0016054 GO:0016853 GO:0016859 GO:0018958 GO:0019336 GO:0019439 GO:0019748 GO:0019752 GO:0032787 GO:0042221 GO:0043436 GO:0044237 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0050896 GO:0071704 GO:0072329 GO:0098754 GO:1901360 GO:1901361 GO:1901575 GO:1901615 GO:1901616 GO:1901999 GO:1902000

KEGG Pathways

Metabolic & Signaling

ko00350 ko00643 ko01100 ko01120 map00350 map00643 map01100 map01120

Pfam Domains

Protein Families

GST_C GST_C_2 GST_C_3 GST_N GST_N_3

Protein Analysis

152

Amino Acids

17.27

Weight (kDa)

8.93

Isoelectric Point (pI)

48.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02380 AT2G02390 AT2G02390 AT2G02390 AT2G02390
fragaria_vesca	FvH4_5g27160
malus_domestica	MD08G1250500.v1.1 MD15G1445700.v1.1
prunus_persica	Prupe.1G587700_v2.0.a1 Prupe.1G587700_v2.0.a1
pyrus_communis	pycom08g21730 pycom15g39250
rosa_chinensis	RchiOBHm_Chr7g0218201 RchiOBHm_Chr7g0218231 RchiOBHm_Chr7g0218251
rosa_laevigata	RLG00000002386 RLG00000002388 RLG00000002390
rosa_multiflora	Rmu_sc0004956.1_g000003 Rmu_sc0008593.1_g000004 Rmu_sc0008593.1_g000008 Rmu_sc0011666.1_g000005 Rmu_sc0021950.1_g000001 Rmu_sc0024798.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032070 Rroxscaffold_3G00241200 Rroxscaffold_3G00241210
rosa_rugosa	Rorug07G0174800 Rorug07G0174900 Rorug07G0175000 Rorug07G0175200 Rorug07G0175300 Rorug07G0175400 Rorug07G0175500 Rorug07G0175500 Rorug07G0175600 Rorug07G0175700 Rorug07G0175800
rosa_samantha	Rh7AG304100 Rh7AG304200 Rh7BG308500 Rh7BG308600 Rh7BG308700 Rh7BG308800 Rh7CG322500 Rh7CG322700 Rh7CG334300 Rh7DG304300 Rh7DG316400
rosa_wichuraiana	Rw7G025830 Rw7G026860 Rw7G026940 Rw7G026950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	425
AcoI	YGGCCR	1 cut(s)	172
AcuI	CTGAAG	2 cut(s)	266, 326
AfaI	GTAC	3 cut(s)	107, 251, 357
AfiI	CCNNNNNNNGG	1 cut(s)	181
AgsI	TTSAA	2 cut(s)	127, 401
AjnI	CCWGG	1 cut(s)	303
AjuI	GAANNNNNNNTTGG	2 cut(s)	386, 418
AluBI	AGCT	3 cut(s)	51, 113, 160
AluI	AGCT	3 cut(s)	51, 113, 160
Alw21I	GWGCWC	1 cut(s)	53
AoxI	GGCC	2 cut(s)	172, 291
ApeKI	GCWGC	1 cut(s)	308
BanII	GRGCYC	2 cut(s)	53, 96
Bbv12I	GWGCWC	1 cut(s)	53
BbvI	GCAGC	1 cut(s)	295
BccI	CCATC	1 cut(s)	188
BcgI	CGANNNNNNTGC	2 cut(s)	203, 237
BciT130I	CCWGG	1 cut(s)	305
BclI	TGATCA	1 cut(s)	16
BfaI	CTAG	1 cut(s)	12
BfuAI	ACCTGC	1 cut(s)	425
BisI	GCNGC	1 cut(s)	309
BlsI	GCNGC	1 cut(s)	310
BmcAI	AGTACT	1 cut(s)	357
Bme1390I	CCNGG	1 cut(s)	305
BmrFI	CCNGG	1 cut(s)	305
BmsI	GCATC	1 cut(s)	379
BpuEI	CTTGAG	1 cut(s)	310
Bsc4I	CCNNNNNNNGG	1 cut(s)	181
Bse118I	RCCGGY	1 cut(s)	181
BseBI	CCWGG	1 cut(s)	305
BseGI	GGATG	2 cut(s)	199, 259
BseLI	CCNNNNNNNGG	1 cut(s)	181
BseMII	CTCAG	2 cut(s)	138, 411
BseXI	GCAGC	1 cut(s)	295
Bsh1285I	CGRYCG	1 cut(s)	171
BshFI	GGCC	2 cut(s)	174, 293
BsiEI	CGRYCG	1 cut(s)	171
BsiHKAI	GWGCWC	1 cut(s)	53
BsiSI	CCGG	1 cut(s)	182
BslFI	GGGAC	1 cut(s)	212
BslI	CCNNNNNNNGG	1 cut(s)	181
BsmFI	GGGAC	1 cut(s)	212
BsnI	GGCC	2 cut(s)	174, 293
Bsp1286I	GDGCHC	2 cut(s)	53, 96
Bsp143I	GATC	2 cut(s)	16, 168
BspANI	GGCC	2 cut(s)	174, 293
BspCNI	CTCAG	2 cut(s)	139, 412
BspMI	ACCTGC	1 cut(s)	425
BsrFI	RCCGGY	1 cut(s)	181
BssAI	RCCGGY	1 cut(s)	181
BssMI	GATC	2 cut(s)	16, 168
Bst2UI	CCWGG	1 cut(s)	305
Bst4CI	ACNGT	2 cut(s)	65, 138
BstDEI	CTNAG	2 cut(s)	147, 420
BstF5I	GGATG	2 cut(s)	199, 259
BstKTI	GATC	2 cut(s)	19, 171
BstMBI	GATC	2 cut(s)	16, 168
BstMCI	CGRYCG	1 cut(s)	171
BstMWI	GCNNNNNNNGC	1 cut(s)	48
BstNI	CCWGG	1 cut(s)	305
BstSCI	CCNGG	1 cut(s)	303
BstV1I	GCAGC	1 cut(s)	295
BsuRI	GGCC	2 cut(s)	174, 293
BtsCI	GGATG	2 cut(s)	199, 259
BveI	ACCTGC	1 cut(s)	425
Cfr10I	RCCGGY	1 cut(s)	181
Csp6I	GTAC	3 cut(s)	106, 250, 356
CviAII	CATG	2 cut(s)	46, 176
CviQI	GTAC	3 cut(s)	106, 250, 356
DdeI	CTNAG	2 cut(s)	147, 420
DpnI	GATC	2 cut(s)	18, 170
DpnII	GATC	2 cut(s)	16, 168
EaeI	YGGCCR	1 cut(s)	172
Ecl136II	GAGCTC	1 cut(s)	51
Eco24I	GRGCYC	2 cut(s)	53, 96
Eco53kI	GAGCTC	1 cut(s)	51
Eco57I	CTGAAG	2 cut(s)	266, 326
EcoICRI	GAGCTC	1 cut(s)	51
EcoRII	CCWGG	1 cut(s)	303
EcoT38I	GRGCYC	2 cut(s)	53, 96
FaeI	CATG	2 cut(s)	49, 179
FaiI	YATR	6 cut(s)	47, 177, 332, 366, 368, 417
FaqI	GGGAC	1 cut(s)	212
FatI	CATG	2 cut(s)	45, 175
FbaI	TGATCA	1 cut(s)	16
Fnu4HI	GCNGC	1 cut(s)	309
FokI	GGATG	2 cut(s)	206, 246
FriOI	GRGCYC	2 cut(s)	53, 96
Fsp4HI	GCNGC	1 cut(s)	309
FspBI	CTAG	1 cut(s)	12
GluI	GCNGC	1 cut(s)	309
HaeIII	GGCC	2 cut(s)	174, 293
HapII	CCGG	1 cut(s)	182
Hin1II	CATG	2 cut(s)	49, 179
HinfI	GANTC	1 cut(s)	215
HpaII	CCGG	1 cut(s)	182
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188I	TCNGA	4 cut(s)	71, 168, 214, 345
Hpy188III	TCNNGA	2 cut(s)	146, 386
Hpy8I	GTNNAC	1 cut(s)	118
HpyAV	CCTTC	3 cut(s)	121, 290, 350
HpyCH4III	ACNGT	2 cut(s)	65, 138
HpyCH4V	TGCA	2 cut(s)	311, 434
HpyF10VI	GCNNNNNNNGC	1 cut(s)	48
HpyF3I	CTNAG	2 cut(s)	147, 420
Hsp92II	CATG	2 cut(s)	49, 179
Ksp22I	TGATCA	1 cut(s)	16
Kzo9I	GATC	2 cut(s)	16, 168
LpnPI	CCDG	7 cut(s)	52, 159, 195, 290, 317, 399, 420
Lsp1109I	GCAGC	1 cut(s)	295
LweI	GCATC	1 cut(s)	379
MaeI	CTAG	1 cut(s)	12
MalI	GATC	2 cut(s)	18, 170
MboI	GATC	2 cut(s)	16, 168
MboII	GAAGA	2 cut(s)	254, 383
MhlI	GDGCHC	2 cut(s)	53, 96
MluCI	AATT	5 cut(s)	29, 72, 361, 396, 401
MnlI	CCTC	2 cut(s)	89, 95
MseI	TTAA	1 cut(s)	297
MspI	CCGG	1 cut(s)	182
MspR9I	CCNGG	1 cut(s)	305
MvaI	CCWGG	1 cut(s)	305
MwoI	GCNNNNNNNGC	1 cut(s)	48
NdeII	GATC	2 cut(s)	16, 168
NlaIII	CATG	2 cut(s)	49, 179
PfeI	GAWTC	1 cut(s)	215
PkrI	GCNGC	1 cut(s)	310
Ple19I	CGATCG	1 cut(s)	171
Psp124BI	GAGCTC	1 cut(s)	53
Psp6I	CCWGG	1 cut(s)	303
PspGI	CCWGG	1 cut(s)	303
PvuI	CGATCG	1 cut(s)	171
RsaI	GTAC	3 cut(s)	107, 251, 357
RsaNI	GTAC	3 cut(s)	106, 250, 356
SacI	GAGCTC	1 cut(s)	53
SaqAI	TTAA	1 cut(s)	297
SatI	GCNGC	1 cut(s)	309
Sau3AI	GATC	2 cut(s)	16, 168
ScaI	AGTACT	1 cut(s)	357
ScrFI	CCNGG	1 cut(s)	305
SduI	GDGCHC	2 cut(s)	53, 96
SetI	ASST	7 cut(s)	53, 87, 115, 162, 282, 430, 439
SfaNI	GCATC	1 cut(s)	379
SmlI	CTYRAG	1 cut(s)	325
SmoI	CTYRAG	1 cut(s)	325
Sse9I	AATT	5 cut(s)	29, 72, 361, 396, 401
SspI	AATATT	1 cut(s)	316
SspMI	CTAG	1 cut(s)	12
SstI	GAGCTC	1 cut(s)	53
StyD4I	CCNGG	1 cut(s)	303
TaaI	ACNGT	2 cut(s)	65, 138
TasI	AATT	5 cut(s)	29, 72, 361, 396, 401
TatI	WGTACW	2 cut(s)	105, 355
TfiI	GAWTC	1 cut(s)	215
Tru1I	TTAA	1 cut(s)	297
Tru9I	TTAA	1 cut(s)	297
TseI	GCWGC	1 cut(s)	308
TspDTI	ATGAA	2 cut(s)	207, 404
TspGWI	ACGGA	1 cut(s)	252
XspI	CTAG	1 cut(s)	12
ZrmI	AGTACT	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.