Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001374

Physical Location & Seq

Genomic Coordinates Reverse (-)

35225757 .. 35229733

Gene Structure 3977 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG304300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGCGACTGCTAGTGACAACAATGGCGATCAACAACTGAAATTGTATTCCTACTACAAGAGCTCTTGCTCTTTCCGTGTCCGAATTGCCCTCAACCTCAAAGGGCTCAAATACGAGTACAAAGCTGTAAACTTGTTGAAGGGAGAACAGTATAGTCCTGAGTTTAGAAAGCTCAATCCGATCGGCCATGTGCCGGTGCTTGTGGATGGGGACTTAGCTGTTTCCGATTCATTTGCCATTTTATTGGCTGCAAATATTGTTTGCTCAAGCATACAGCCCCTTCAGAATAGGGCAGTACTGAATTATATAGAAGAAAGGGTTAGTCCAGATGCGAAAATTGAATTGGCTAAAGTTCATACTGAGAAAGGTTTTGCAGCACTTGAAGATCTTCTGAAAAACTATGCAGGAAGATATGCAACTGGAGATGAAGTTTCTTTTGCAGATTTGTTTTTGGCGCCCCAGATTCGTGCAGCTTTTAAATGGTTCAATCTAGACATGACCCAGTTCCCCCTTTTGTCCAGGTTGCATGAGGCATACAATGAGATACCAGCATTCGTAGATGCTAGGCCAGATAAGCAGCCGGATGCTCCTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006725 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016034 GO:0016054 GO:0016853 GO:0016859 GO:0018958 GO:0019336 GO:0019439 GO:0019748 GO:0019752 GO:0032787 GO:0042221 GO:0043436 GO:0044237 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0050896 GO:0071704 GO:0072329 GO:0098754 GO:1901360 GO:1901361 GO:1901575 GO:1901615 GO:1901616 GO:1901999 GO:1902000

KEGG Pathways

Metabolic & Signaling

ko00350 ko00643 ko01100 ko01120 map00350 map00643 map01100 map01120

Pfam Domains

Protein Families

GST_C GST_C_2 GST_C_3 GST_N GST_N_3

Protein Analysis

198

Amino Acids

22.16

Weight (kDa)

5.94

Isoelectric Point (pI)

37.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	12 - 81	3.4e-16	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	15 - 81	6.3e-13	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	21 - 82	5.2e-14	Glutathione S-transferase, N-terminal domain
GST_C_3	PF14497	112 - 184	4.2e-06	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02380 AT2G02390 AT2G02390 AT2G02390 AT2G02390
fragaria_vesca	FvH4_5g27160
malus_domestica	MD08G1250500.v1.1 MD15G1445700.v1.1
prunus_persica	Prupe.1G587700_v2.0.a1 Prupe.1G587700_v2.0.a1
pyrus_communis	pycom08g21730 pycom15g39250
rosa_chinensis	RchiOBHm_Chr7g0218201 RchiOBHm_Chr7g0218231 RchiOBHm_Chr7g0218251
rosa_laevigata	RLG00000002386 RLG00000002388 RLG00000002390
rosa_multiflora	Rmu_sc0004956.1_g000003 Rmu_sc0008593.1_g000004 Rmu_sc0008593.1_g000008 Rmu_sc0011666.1_g000005 Rmu_sc0021950.1_g000001 Rmu_sc0024798.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032070 Rroxscaffold_3G00241200 Rroxscaffold_3G00241210
rosa_rugosa	Rorug07G0174800 Rorug07G0174900 Rorug07G0175000 Rorug07G0175200 Rorug07G0175300 Rorug07G0175400 Rorug07G0175500 Rorug07G0175500 Rorug07G0175600 Rorug07G0175700 Rorug07G0175800
rosa_samantha	Rh7AG304100 Rh7AG304200 Rh7BG308500 Rh7BG308600 Rh7BG308700 Rh7BG308800 Rh7CG322500 Rh7CG322700 Rh7CG334300 Rh7DG304300 Rh7DG316400
rosa_wichuraiana	Rw7G025830 Rw7G026860 Rw7G026940 Rw7G026950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	454
AcoI	YGGCCR	1 cut(s)	184
AcuI	CTGAAG	1 cut(s)	266
AcyI	GRCGYC	1 cut(s)	455
AfaI	GTAC	2 cut(s)	119, 297
AfiI	CCNNNNNNNGG	1 cut(s)	193
AgsI	TTSAA	4 cut(s)	139, 341, 383, 487
AjnI	CCWGG	1 cut(s)	518
AjuI	GAANNNNNNNTTGG	2 cut(s)	326, 358
AluBI	AGCT	5 cut(s)	63, 125, 172, 218, 473
AluI	AGCT	5 cut(s)	63, 125, 172, 218, 473
Alw21I	GWGCWC	1 cut(s)	65
AoxI	GGCC	2 cut(s)	184, 566
ApeKI	GCWGC	4 cut(s)	248, 374, 470, 577
Asp700I	GAANNNNTTC	1 cut(s)	387
AspLEI	GCGC	1 cut(s)	457
BanI	GGYRCC	1 cut(s)	454
BanII	GRGCYC	2 cut(s)	65, 108
Bbv12I	GWGCWC	1 cut(s)	65
BbvI	GCAGC	4 cut(s)	235, 386, 482, 589
BccI	CCATC	1 cut(s)	200
BcgI	CGANNNNNNTGC	2 cut(s)	215, 249
BciT130I	CCWGG	1 cut(s)	520
BfaI	CTAG	3 cut(s)	12, 491, 564
BfoI	RGCGCY	1 cut(s)	458
BglII	AGATCT	1 cut(s)	385
BisI	GCNGC	4 cut(s)	249, 375, 471, 578
BlsI	GCNGC	4 cut(s)	250, 376, 472, 579
BmcAI	AGTACT	1 cut(s)	297
Bme1390I	CCNGG	1 cut(s)	520
BmiI	GGNNCC	1 cut(s)	456
BmrFI	CCNGG	1 cut(s)	520
BmrI	ACTGGG	1 cut(s)	496
BmsI	GCATC	3 cut(s)	319, 550, 574
BmuI	ACTGGG	1 cut(s)	496
BpmI	CTGGAG	1 cut(s)	441
BpuEI	CTTGAG	1 cut(s)	250
BsaHI	GRCGYC	1 cut(s)	455
BsaXI	ACNNNNNCTCC	2 cut(s)	414, 444
Bsc4I	CCNNNNNNNGG	1 cut(s)	193
Bse118I	RCCGGY	1 cut(s)	193
Bse1I	ACTGG	2 cut(s)	424, 502
BseBI	CCWGG	1 cut(s)	520
BseGI	GGATG	2 cut(s)	211, 589
BseLI	CCNNNNNNNGG	1 cut(s)	193
BseMII	CTCAG	2 cut(s)	150, 351
BseNI	ACTGG	2 cut(s)	424, 502
BseXI	GCAGC	4 cut(s)	235, 386, 482, 589
BsgI	GTGCAG	1 cut(s)	489
Bsh1285I	CGRYCG	1 cut(s)	183
BshFI	GGCC	2 cut(s)	186, 568
BshNI	GGYRCC	1 cut(s)	454
BsiEI	CGRYCG	1 cut(s)	183
BsiHKAI	GWGCWC	1 cut(s)	65
BsiSI	CCGG	2 cut(s)	194, 581
BslFI	GGGAC	1 cut(s)	224
BslI	CCNNNNNNNGG	1 cut(s)	193
BsmFI	GGGAC	1 cut(s)	224
BsmI	GAATGC	1 cut(s)	551
BsnI	GGCC	2 cut(s)	186, 568
Bsp1286I	GDGCHC	2 cut(s)	65, 108
Bsp143I	GATC	3 cut(s)	28, 180, 385
BspANI	GGCC	2 cut(s)	186, 568
BspCNI	CTCAG	2 cut(s)	151, 352
BspLI	GGNNCC	1 cut(s)	456
BspT107I	GGYRCC	1 cut(s)	454
BsrFI	RCCGGY	1 cut(s)	193
BsrI	ACTGG	2 cut(s)	424, 502
BssAI	RCCGGY	1 cut(s)	193
BssMI	GATC	3 cut(s)	28, 180, 385
BssNI	GRCGYC	1 cut(s)	455
Bst2UI	CCWGG	1 cut(s)	520
Bst4CI	ACNGT	1 cut(s)	150
BstACI	GRCGYC	1 cut(s)	455
BstDEI	CTNAG	3 cut(s)	159, 214, 360
BstF5I	GGATG	2 cut(s)	211, 589
BstH2I	RGCGCY	1 cut(s)	458
BstHHI	GCGC	1 cut(s)	457
BstKTI	GATC	3 cut(s)	31, 183, 388
BstMBI	GATC	3 cut(s)	28, 180, 385
BstMCI	CGRYCG	1 cut(s)	183
BstMWI	GCNNNNNNNGC	1 cut(s)	574
BstNI	CCWGG	1 cut(s)	520
BstSCI	CCNGG	1 cut(s)	518
BstV1I	GCAGC	4 cut(s)	235, 386, 482, 589
BstX2I	RGATCY	1 cut(s)	385
BstXI	CCANNNNNNTGG	1 cut(s)	244
BstYI	RGATCY	1 cut(s)	385
BsuRI	GGCC	2 cut(s)	186, 568
BtsCI	GGATG	2 cut(s)	211, 589
CfoI	GCGC	1 cut(s)	457
Cfr10I	RCCGGY	1 cut(s)	193
Csp6I	GTAC	2 cut(s)	118, 296
CviAII	CATG	3 cut(s)	188, 496, 527
CviQI	GTAC	2 cut(s)	118, 296
DdeI	CTNAG	3 cut(s)	159, 214, 360
DinI	GGCGCC	1 cut(s)	456
DpnI	GATC	3 cut(s)	30, 182, 387
DpnII	GATC	3 cut(s)	28, 180, 385
DraI	TTTAAA	1 cut(s)	478
EaeI	YGGCCR	1 cut(s)	184
Ecl136II	GAGCTC	1 cut(s)	63
Eco24I	GRGCYC	2 cut(s)	65, 108
Eco53kI	GAGCTC	1 cut(s)	63
Eco57I	CTGAAG	1 cut(s)	266
EcoICRI	GAGCTC	1 cut(s)	63
EcoRII	CCWGG	1 cut(s)	518
EcoT38I	GRGCYC	2 cut(s)	65, 108
EgeI	GGCGCC	1 cut(s)	456
EheI	GGCGCC	1 cut(s)	456
FaeI	CATG	3 cut(s)	191, 499, 530
FaqI	GGGAC	1 cut(s)	224
FatI	CATG	3 cut(s)	187, 495, 526
Fnu4HI	GCNGC	4 cut(s)	249, 375, 471, 578
FokI	GGATG	1 cut(s)	218
FriOI	GRGCYC	2 cut(s)	65, 108
Fsp4HI	GCNGC	4 cut(s)	249, 375, 471, 578
FspBI	CTAG	3 cut(s)	12, 491, 564
GlaI	GCGC	1 cut(s)	456
GluI	GCNGC	4 cut(s)	249, 375, 471, 578
GsuI	CTGGAG	1 cut(s)	441
HaeII	RGCGCY	1 cut(s)	458
HaeIII	GGCC	2 cut(s)	186, 568
HapII	CCGG	2 cut(s)	194, 581
HhaI	GCGC	1 cut(s)	457
Hin1I	GRCGYC	1 cut(s)	455
Hin1II	CATG	3 cut(s)	191, 499, 530
Hin6I	GCGC	1 cut(s)	455
HinP1I	GCGC	1 cut(s)	455
HinfI	GANTC	2 cut(s)	227, 463
HpaII	CCGG	2 cut(s)	194, 581
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	5 cut(s)	83, 180, 226, 285, 393
Hpy188III	TCNNGA	3 cut(s)	158, 326, 491
Hpy8I	GTNNAC	1 cut(s)	130
HpyAV	CCTTC	2 cut(s)	133, 290
HpyCH4III	ACNGT	1 cut(s)	150
HpyCH4V	TGCA	7 cut(s)	251, 374, 404, 416, 440, 470, 526
HpyF10VI	GCNNNNNNNGC	1 cut(s)	574
HpyF3I	CTNAG	3 cut(s)	159, 214, 360
Hsp92I	GRCGYC	1 cut(s)	455
Hsp92II	CATG	3 cut(s)	191, 499, 530
HspAI	GCGC	1 cut(s)	455
KasI	GGCGCC	1 cut(s)	454
Kzo9I	GATC	3 cut(s)	28, 180, 385
LmnI	GCTCC	1 cut(s)	592
Lsp1109I	GCAGC	4 cut(s)	235, 386, 482, 589
LweI	GCATC	3 cut(s)	319, 550, 574
MaeI	CTAG	3 cut(s)	12, 491, 564
MaeIII	GTNAC	1 cut(s)	14
MalI	GATC	3 cut(s)	30, 182, 387
MboI	GATC	3 cut(s)	28, 180, 385
MboII	GAAGA	4 cut(s)	323, 380, 395, 420
MflI	RGATCY	1 cut(s)	385
MhlI	GDGCHC	2 cut(s)	65, 108
MluCI	AATT	5 cut(s)	41, 84, 301, 336, 341
Mly113I	GGCGCC	1 cut(s)	455
MnlI	CCTC	3 cut(s)	101, 107, 523
MroXI	GAANNNNTTC	1 cut(s)	387
MseI	TTAA	1 cut(s)	477
MspI	CCGG	2 cut(s)	194, 581
MspR9I	CCNGG	1 cut(s)	520
Mva1269I	GAATGC	1 cut(s)	551
MvaI	CCWGG	1 cut(s)	520
MwoI	GCNNNNNNNGC	1 cut(s)	574
NarI	GGCGCC	1 cut(s)	455
NdeII	GATC	3 cut(s)	28, 180, 385
NlaIII	CATG	3 cut(s)	191, 499, 530
NlaIV	GGNNCC	1 cut(s)	456
NmuCI	GTSAC	1 cut(s)	14
PctI	GAATGC	1 cut(s)	551
PdmI	GAANNNNTTC	1 cut(s)	387
PfeI	GAWTC	2 cut(s)	227, 463
PkrI	GCNGC	4 cut(s)	250, 376, 472, 579
Ple19I	CGATCG	1 cut(s)	183
PluTI	GGCGCC	1 cut(s)	458
Psp124BI	GAGCTC	1 cut(s)	65
Psp6I	CCWGG	1 cut(s)	518
PspGI	CCWGG	1 cut(s)	518
PspN4I	GGNNCC	1 cut(s)	456
PsuI	RGATCY	1 cut(s)	385
PvuI	CGATCG	1 cut(s)	183
RsaI	GTAC	2 cut(s)	119, 297
RsaNI	GTAC	2 cut(s)	118, 296
SacI	GAGCTC	1 cut(s)	65
SaqAI	TTAA	1 cut(s)	477
SatI	GCNGC	4 cut(s)	249, 375, 471, 578
Sau3AI	GATC	3 cut(s)	28, 180, 385
ScaI	AGTACT	1 cut(s)	297
ScrFI	CCNGG	1 cut(s)	520
SduI	GDGCHC	2 cut(s)	65, 108
SetI	ASST	8 cut(s)	65, 99, 127, 174, 220, 370, 475, 524
SfaNI	GCATC	3 cut(s)	319, 550, 574
SfoI	GGCGCC	1 cut(s)	456
SmlI	CTYRAG	1 cut(s)	265
SmoI	CTYRAG	1 cut(s)	265
Sse9I	AATT	5 cut(s)	41, 84, 301, 336, 341
SspDI	GGCGCC	1 cut(s)	454
SspI	AATATT	1 cut(s)	256
SspMI	CTAG	3 cut(s)	12, 491, 564
SstI	GAGCTC	1 cut(s)	65
StyD4I	CCNGG	1 cut(s)	518
TaaI	ACNGT	1 cut(s)	150
TasI	AATT	5 cut(s)	41, 84, 301, 336, 341
TatI	WGTACW	2 cut(s)	117, 295
TfiI	GAWTC	2 cut(s)	227, 463
Tru1I	TTAA	1 cut(s)	477
Tru9I	TTAA	1 cut(s)	477
TseFI	GTSAC	1 cut(s)	14
TseI	GCWGC	4 cut(s)	248, 374, 470, 577
Tsp45I	GTSAC	1 cut(s)	14
TspDTI	ATGAA	4 cut(s)	219, 344, 441, 582
TspGWI	ACGGA	1 cut(s)	65
XbaI	TCTAGA	1 cut(s)	490
XmnI	GAANNNNTTC	1 cut(s)	387
XspI	CTAG	3 cut(s)	12, 491, 564
ZrmI	AGTACT	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.