Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0001374

Physical Location & Seq

Genomic Coordinates Reverse (-)

21146282 .. 21151390

Gene Structure 5109 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g21730.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGAGCTCTTGCTCCTTCCGTGTCCGAATTGCTCTCAACTTGAAGGGGCTGAAATACGAGTACAAAGCTCTGGTGAAGGGAGAGCAATTCAGTCCCGAGTTCAGAAAGCTAAATCCGATGGGGTATGTGCCTGTGCTTGTGGATGGGGACACCGTTGTTGCTGACTCATTTGCCATCCTACTGTATTTAGAAGAAAAGTACCCGCAGCATCCATTGTTACCACCAGATCTTCAGAAAAAGGCTATCAATTACCAGGCTGCAAATATTGTTTCCTCAAGCATACAACCTCTACAGAATCTGACTGTCCTGAAGTACATTGAAGAAAAAGTTAGGCCCGTTGAGAAACTTGAATGGGTTCAATTTCATATTGGAAAAGGCTTTTTAGCACTTGAAGAACTGCTGAACAACCATGCAGGAAAATATGCAACTGGAGATGAAGTTTACATGGCAGATTTGTTTCTGGCACCGCAGCTTTGTGCAGCCATTACAAGGTTCCAGCTAGACATGACTCAGTTTCCCCTTTTGGCCAGGTTGCATGAGGCATACAATAAGATACCAGCATTCCTAGATGCTTTACCAGAAAAGCAGCCGGATGCTCCTTCTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006725 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016034 GO:0016054 GO:0016853 GO:0016859 GO:0018958 GO:0019336 GO:0019439 GO:0019748 GO:0019752 GO:0032787 GO:0042221 GO:0043436 GO:0044237 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0050896 GO:0071704 GO:0072329 GO:0098754 GO:1901360 GO:1901361 GO:1901575 GO:1901615 GO:1901616 GO:1901999 GO:1902000

KEGG Pathways

Metabolic & Signaling

ko00350 ko00643 ko01100 ko01120 map00350 map00643 map01100 map01120

Pfam Domains

Protein Families

GST_C GST_C_2 GST_C_3 GST_N GST_N_3

Protein Analysis

203

Amino Acids

22.84

Weight (kDa)

6.1

Isoelectric Point (pI)

46.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02380 AT2G02390 AT2G02390 AT2G02390 AT2G02390
fragaria_vesca	FvH4_5g27160
malus_domestica	MD08G1250500.v1.1 MD15G1445700.v1.1
prunus_persica	Prupe.1G587700_v2.0.a1 Prupe.1G587700_v2.0.a1
pyrus_communis	pycom08g21730 pycom15g39250
rosa_chinensis	RchiOBHm_Chr7g0218201 RchiOBHm_Chr7g0218231 RchiOBHm_Chr7g0218251
rosa_laevigata	RLG00000002386 RLG00000002388 RLG00000002390
rosa_multiflora	Rmu_sc0004956.1_g000003 Rmu_sc0008593.1_g000004 Rmu_sc0008593.1_g000008 Rmu_sc0011666.1_g000005 Rmu_sc0021950.1_g000001 Rmu_sc0024798.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032070 Rroxscaffold_3G00241200 Rroxscaffold_3G00241210
rosa_rugosa	Rorug07G0174800 Rorug07G0174900 Rorug07G0175000 Rorug07G0175200 Rorug07G0175300 Rorug07G0175400 Rorug07G0175500 Rorug07G0175500 Rorug07G0175600 Rorug07G0175700 Rorug07G0175800
rosa_samantha	Rh7AG304100 Rh7AG304200 Rh7BG308500 Rh7BG308600 Rh7BG308700 Rh7BG308800 Rh7CG322500 Rh7CG322700 Rh7CG334300 Rh7DG304300 Rh7DG316400
rosa_wichuraiana	Rw7G025830 Rw7G026860 Rw7G026940 Rw7G026950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	463
AciI	CCGC	2 cut(s)	203, 467
AcoI	YGGCCR	1 cut(s)	525
AcuI	CTGAAG	2 cut(s)	215, 329
AfaI	GTAC	3 cut(s)	62, 200, 314
AfiI	CCNNNNNNNGG	1 cut(s)	489
AgsI	TTSAA	5 cut(s)	43, 320, 350, 359, 392
AjnI	CCWGG	2 cut(s)	252, 527
AluBI	AGCT	5 cut(s)	6, 68, 109, 472, 499
AluI	AGCT	5 cut(s)	6, 68, 109, 472, 499
Alw21I	GWGCWC	1 cut(s)	8
AlwNI	CAGNNNCTG	1 cut(s)	298
Ama87I	CYCGRG	1 cut(s)	95
AoxI	GGCC	2 cut(s)	332, 525
ApeKI	GCWGC	5 cut(s)	205, 257, 469, 479, 586
Asp700I	GAANNNNTTC	1 cut(s)	354
AspS9I	GGNCC	1 cut(s)	333
AsuHPI	GGTGA	1 cut(s)	85
AvaI	CYCGRG	1 cut(s)	95
BalI	TGGCCA	1 cut(s)	527
BanI	GGYRCC	1 cut(s)	463
BanII	GRGCYC	1 cut(s)	8
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	5 cut(s)	217, 244, 481, 491, 598
BccI	CCATC	3 cut(s)	112, 137, 182
BciT130I	CCWGG	2 cut(s)	254, 529
BfaI	CTAG	2 cut(s)	500, 566
BfmI	CTRYAG	1 cut(s)	290
BglII	AGATCT	1 cut(s)	226
BisI	GCNGC	5 cut(s)	206, 258, 470, 480, 587
BlsI	GCNGC	5 cut(s)	207, 259, 471, 481, 588
Bme1390I	CCNGG	2 cut(s)	254, 529
BmeT110I	CYCGRG	1 cut(s)	95
BmgT120I	GGNCC	1 cut(s)	333
BmiI	GGNNCC	2 cut(s)	465, 494
BmrFI	CCNGG	2 cut(s)	254, 529
BmsI	GCATC	3 cut(s)	217, 559, 583
BpmI	CTGGAG	1 cut(s)	450
BpuEI	CTTGAG	1 cut(s)	259
BsaXI	ACNNNNNCTCC	2 cut(s)	423, 453
Bsc4I	CCNNNNNNNGG	1 cut(s)	489
Bse1I	ACTGG	1 cut(s)	433
BseBI	CCWGG	2 cut(s)	254, 529
BseGI	GGATG	4 cut(s)	148, 174, 208, 598
BseLI	CCNNNNNNNGG	1 cut(s)	489
BseMII	CTCAG	1 cut(s)	524
BseNI	ACTGG	1 cut(s)	433
BseXI	GCAGC	5 cut(s)	217, 244, 481, 491, 598
BsgI	GTGCAG	1 cut(s)	498
BshFI	GGCC	2 cut(s)	334, 527
BshNI	GGYRCC	1 cut(s)	463
BsiHKAI	GWGCWC	1 cut(s)	8
BsiHKCI	CYCGRG	1 cut(s)	95
BsiSI	CCGG	1 cut(s)	590
BslFI	GGGAC	2 cut(s)	78, 161
BslI	CCNNNNNNNGG	1 cut(s)	489
BsmFI	GGGAC	2 cut(s)	78, 161
BsmI	GAATGC	1 cut(s)	560
BsnI	GGCC	2 cut(s)	334, 527
BsoBI	CYCGRG	1 cut(s)	95
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	1 cut(s)	226
BspACI	CCGC	2 cut(s)	203, 467
BspANI	GGCC	2 cut(s)	334, 527
BspCNI	CTCAG	1 cut(s)	523
BspLI	GGNNCC	2 cut(s)	465, 494
BspT107I	GGYRCC	1 cut(s)	463
BsrI	ACTGG	1 cut(s)	433
BssMI	GATC	1 cut(s)	226
Bst2UI	CCWGG	2 cut(s)	254, 529
Bst4CI	ACNGT	3 cut(s)	154, 183, 304
BstDEI	CTNAG	1 cut(s)	510
BstF5I	GGATG	4 cut(s)	148, 174, 208, 598
BstKTI	GATC	1 cut(s)	229
BstMBI	GATC	1 cut(s)	226
BstNI	CCWGG	2 cut(s)	254, 529
BstSCI	CCNGG	2 cut(s)	252, 527
BstSFI	CTRYAG	1 cut(s)	290
BstV1I	GCAGC	5 cut(s)	217, 244, 481, 491, 598
BstX2I	RGATCY	1 cut(s)	226
BstYI	RGATCY	1 cut(s)	226
BsuRI	GGCC	2 cut(s)	334, 527
BtsCI	GGATG	4 cut(s)	148, 174, 208, 598
CaiI	CAGNNNCTG	1 cut(s)	298
Cfr13I	GGNCC	1 cut(s)	333
Csp6I	GTAC	3 cut(s)	61, 199, 313
CviAII	CATG	4 cut(s)	410, 445, 505, 536
CviQI	GTAC	3 cut(s)	61, 199, 313
DdeI	CTNAG	1 cut(s)	510
DpnI	GATC	1 cut(s)	228
DpnII	GATC	1 cut(s)	226
EaeI	YGGCCR	1 cut(s)	525
Ecl136II	GAGCTC	1 cut(s)	6
Eco24I	GRGCYC	1 cut(s)	8
Eco53kI	GAGCTC	1 cut(s)	6
Eco57I	CTGAAG	2 cut(s)	215, 329
Eco88I	CYCGRG	1 cut(s)	95
EcoICRI	GAGCTC	1 cut(s)	6
EcoRII	CCWGG	2 cut(s)	252, 527
EcoT38I	GRGCYC	1 cut(s)	8
FaeI	CATG	4 cut(s)	413, 448, 508, 539
FaqI	GGGAC	2 cut(s)	78, 161
FatI	CATG	4 cut(s)	409, 444, 504, 535
FauI	CCCGC	1 cut(s)	210
Fnu4HI	GCNGC	5 cut(s)	206, 258, 470, 480, 587
FokI	GGATG	4 cut(s)	155, 161, 195, 605
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	5 cut(s)	206, 258, 470, 480, 587
FspBI	CTAG	2 cut(s)	500, 566
GluI	GCNGC	5 cut(s)	206, 258, 470, 480, 587
GsuI	CTGGAG	1 cut(s)	450
HaeIII	GGCC	2 cut(s)	334, 527
HapII	CCGG	1 cut(s)	590
Hin1II	CATG	4 cut(s)	413, 448, 508, 539
HinfI	GANTC	3 cut(s)	164, 295, 508
HpaII	CCGG	1 cut(s)	590
HphI	GGTGA	1 cut(s)	85
Hpy166II	GTNNAC	1 cut(s)	442
Hpy188I	TCNGA	5 cut(s)	26, 104, 117, 234, 300
Hpy188III	TCNNGA	2 cut(s)	95, 307
Hpy8I	GTNNAC	1 cut(s)	442
HpyAV	CCTTC	4 cut(s)	25, 37, 70, 609
HpyCH4III	ACNGT	3 cut(s)	154, 183, 304
HpyCH4V	TGCA	5 cut(s)	260, 413, 425, 479, 535
HpyF3I	CTNAG	1 cut(s)	510
Hsp92II	CATG	4 cut(s)	413, 448, 508, 539
Kzo9I	GATC	1 cut(s)	226
LmnI	GCTCC	2 cut(s)	17, 601
Lsp1109I	GCAGC	5 cut(s)	217, 244, 481, 491, 598
LweI	GCATC	3 cut(s)	217, 559, 583
MaeI	CTAG	2 cut(s)	500, 566
MaeIII	GTNAC	1 cut(s)	216
MalI	GATC	1 cut(s)	228
MboI	GATC	1 cut(s)	226
MboII	GAAGA	5 cut(s)	203, 221, 332, 404, 594
MflI	RGATCY	1 cut(s)	226
MhlI	GDGCHC	1 cut(s)	8
MlsI	TGGCCA	1 cut(s)	527
MluCI	AATT	4 cut(s)	27, 86, 247, 359
MluNI	TGGCCA	1 cut(s)	527
MlyI	GAGTC	2 cut(s)	158, 502
MnlI	CCTC	3 cut(s)	283, 297, 532
Mox20I	TGGCCA	1 cut(s)	527
MroXI	GAANNNNTTC	1 cut(s)	354
MscI	TGGCCA	1 cut(s)	527
Msp20I	TGGCCA	1 cut(s)	527
MspI	CCGG	1 cut(s)	590
MspR9I	CCNGG	2 cut(s)	254, 529
Mva1269I	GAATGC	1 cut(s)	560
MvaI	CCWGG	2 cut(s)	254, 529
NdeII	GATC	1 cut(s)	226
NlaIII	CATG	4 cut(s)	413, 448, 508, 539
NlaIV	GGNNCC	2 cut(s)	465, 494
PctI	GAATGC	1 cut(s)	560
PdmI	GAANNNNTTC	1 cut(s)	354
PfeI	GAWTC	1 cut(s)	295
PkrI	GCNGC	5 cut(s)	207, 259, 471, 481, 588
PleI	GAGTC	2 cut(s)	158, 502
PpsI	GAGTC	2 cut(s)	158, 502
Psp124BI	GAGCTC	1 cut(s)	8
Psp6I	CCWGG	2 cut(s)	252, 527
PspGI	CCWGG	2 cut(s)	252, 527
PspN4I	GGNNCC	2 cut(s)	465, 494
PspPI	GGNCC	1 cut(s)	333
PstNI	CAGNNNCTG	1 cut(s)	298
PsuI	RGATCY	1 cut(s)	226
RsaI	GTAC	3 cut(s)	62, 200, 314
RsaNI	GTAC	3 cut(s)	61, 199, 313
SacI	GAGCTC	1 cut(s)	8
SatI	GCNGC	5 cut(s)	206, 258, 470, 480, 587
Sau3AI	GATC	1 cut(s)	226
Sau96I	GGNCC	1 cut(s)	333
SchI	GAGTC	2 cut(s)	158, 502
ScrFI	CCNGG	2 cut(s)	254, 529
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	8 cut(s)	8, 70, 111, 289, 474, 494, 501, 533
SfaNI	GCATC	3 cut(s)	217, 559, 583
SfcI	CTRYAG	1 cut(s)	290
SmlI	CTYRAG	1 cut(s)	274
SmoI	CTYRAG	1 cut(s)	274
Sse9I	AATT	4 cut(s)	27, 86, 247, 359
SsiI	CCGC	2 cut(s)	203, 467
SspI	AATATT	1 cut(s)	265
SspMI	CTAG	2 cut(s)	500, 566
SstI	GAGCTC	1 cut(s)	8
StyD4I	CCNGG	2 cut(s)	252, 527
TaaI	ACNGT	3 cut(s)	154, 183, 304
TasI	AATT	4 cut(s)	27, 86, 247, 359
TatI	WGTACW	2 cut(s)	60, 312
TfiI	GAWTC	1 cut(s)	295
TseI	GCWGC	5 cut(s)	205, 257, 469, 479, 586
TspDTI	ATGAA	3 cut(s)	353, 450, 594
TspGWI	ACGGA	1 cut(s)	8
XmnI	GAANNNNTTC	1 cut(s)	354
XspI	CTAG	2 cut(s)	500, 566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.