Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001374

Physical Location & Seq

Genomic Coordinates Forward (+)

36250681 .. 36255378

Gene Structure 4698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19536

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGCGAGTGGTAGTGACGAAAATGGCGATCAACAACTGAAATTGTATTCCTACTACATGAGCTCTTGTGCTTACCGTGTCCGAATTGCACTCAACCTCAAAGGGCTCAAATACGAGTACAAAGCTGTAAACTTGTTGAAGGGAGAACAGTTTAGTCCTGAGTTTAGAAAGCTGAATCCTATCTGCTGTGTGCCGGTACTTGTGGATGGGGACATAGCTGTTTCTGATTCATTTGCCATATTATTGTATTTGGAAGAAAAGTACCCACAACATCCGTTGTTGCCTGAAGACCTTCAGCGAAAGGCCATTAACTTCCAGGCTGCAAATATTGTTTGCTCAAGCATACAGCCCCTTCTGAATCTGGCAGTACTGAATTATATAGAAGAAAGGGTTAGTCCAGATGCAAAAATTGAATGGGCTAAAGTTCATATTGGGAAAGGTTTTGCAGCACTTGAAGATCTACTGAAAAACTATGCAGGAAGATATGCAATTGGAGATGAAGTTTCTTTTGCAGATTTATTCCTGGCGCCCCAGATTGATGCATCTTTTTCAAGGTTCAATCTAGACATGACCCAGTTCCCCCTTTTGTCCAGGTTGCATGAGGCATACGATGAGATACCAGCATTCATAGATGCTAGGCCGGATAAGCAGCCGGATGCTACTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006725 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016034 GO:0016054 GO:0016853 GO:0016859 GO:0018958 GO:0019336 GO:0019439 GO:0019748 GO:0019752 GO:0032787 GO:0042221 GO:0043436 GO:0044237 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0050896 GO:0071704 GO:0072329 GO:0098754 GO:1901360 GO:1901361 GO:1901575 GO:1901615 GO:1901616 GO:1901999 GO:1902000

KEGG Pathways

Metabolic & Signaling

ko00350 ko00643 ko01100 ko01120 map00350 map00643 map01100 map01120

Pfam Domains

Protein Families

GST_C GST_C_2 GST_C_3 GST_N GST_N_3

Protein Analysis

222

Amino Acids

24.99

Weight (kDa)

4.94

Isoelectric Point (pI)

44.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	12 - 85	6.2e-16	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	15 - 91	2.3e-15	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	21 - 86	1.3e-15	Glutathione S-transferase, N-terminal domain
GST_C_3	PF14497	136 - 207	3.6e-07	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02380 AT2G02390 AT2G02390 AT2G02390 AT2G02390
fragaria_vesca	FvH4_5g27160
malus_domestica	MD08G1250500.v1.1 MD15G1445700.v1.1
prunus_persica	Prupe.1G587700_v2.0.a1 Prupe.1G587700_v2.0.a1
pyrus_communis	pycom08g21730 pycom15g39250
rosa_chinensis	RchiOBHm_Chr7g0218201 RchiOBHm_Chr7g0218231 RchiOBHm_Chr7g0218251
rosa_laevigata	RLG00000002386 RLG00000002388 RLG00000002390
rosa_multiflora	Rmu_sc0004956.1_g000003 Rmu_sc0008593.1_g000004 Rmu_sc0008593.1_g000008 Rmu_sc0011666.1_g000005 Rmu_sc0021950.1_g000001 Rmu_sc0024798.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032070 Rroxscaffold_3G00241200 Rroxscaffold_3G00241210
rosa_rugosa	Rorug07G0174800 Rorug07G0174900 Rorug07G0175000 Rorug07G0175200 Rorug07G0175300 Rorug07G0175400 Rorug07G0175500 Rorug07G0175500 Rorug07G0175600 Rorug07G0175700 Rorug07G0175800
rosa_samantha	Rh7AG304100 Rh7AG304200 Rh7BG308500 Rh7BG308600 Rh7BG308700 Rh7BG308800 Rh7CG322500 Rh7CG322700 Rh7CG334300 Rh7DG304300 Rh7DG316400
rosa_wichuraiana	Rw7G025830 Rw7G026860 Rw7G026940 Rw7G026950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	526
AcuI	CTGAAG	2 cut(s)	278, 306
AcyI	GRCGYC	1 cut(s)	527
AfaI	GTAC	4 cut(s)	119, 198, 263, 369
AgsI	TTSAA	5 cut(s)	139, 413, 455, 552, 559
AjnI	CCWGG	3 cut(s)	315, 522, 590
AluBI	AGCT	4 cut(s)	63, 125, 172, 218
AluI	AGCT	4 cut(s)	63, 125, 172, 218
Alw21I	GWGCWC	1 cut(s)	65
AoxI	GGCC	2 cut(s)	303, 638
ApeKI	GCWGC	3 cut(s)	320, 446, 649
Asp700I	GAANNNNTTC	1 cut(s)	291
AspLEI	GCGC	1 cut(s)	529
BanI	GGYRCC	1 cut(s)	526
BanII	GRGCYC	2 cut(s)	65, 108
BbsI	GAAGAC	1 cut(s)	294
Bbv12I	GWGCWC	1 cut(s)	65
BbvI	GCAGC	3 cut(s)	307, 458, 661
BccI	CCATC	1 cut(s)	200
BciT130I	CCWGG	3 cut(s)	317, 524, 592
BfaI	CTAG	2 cut(s)	563, 636
BfoI	RGCGCY	1 cut(s)	530
BglII	AGATCT	1 cut(s)	457
BisI	GCNGC	3 cut(s)	321, 447, 650
BlsI	GCNGC	3 cut(s)	322, 448, 651
BmcAI	AGTACT	1 cut(s)	369
Bme1390I	CCNGG	3 cut(s)	317, 524, 592
BmiI	GGNNCC	1 cut(s)	528
BmrFI	CCNGG	3 cut(s)	317, 524, 592
BmrI	ACTGGG	1 cut(s)	568
BmsI	GCATC	5 cut(s)	391, 529, 551, 622, 646
BmuI	ACTGGG	1 cut(s)	568
BpiI	GAAGAC	1 cut(s)	294
BpuEI	CTTGAG	1 cut(s)	322
BsaHI	GRCGYC	1 cut(s)	527
BsaXI	ACNNNNNCTCC	2 cut(s)	486, 516
Bse118I	RCCGGY	1 cut(s)	193
Bse1I	ACTGG	1 cut(s)	574
BseBI	CCWGG	3 cut(s)	317, 524, 592
BseGI	GGATG	3 cut(s)	211, 271, 661
BseMII	CTCAG	1 cut(s)	150
BseNI	ACTGG	1 cut(s)	574
BseXI	GCAGC	3 cut(s)	307, 458, 661
BshFI	GGCC	2 cut(s)	305, 640
BshNI	GGYRCC	1 cut(s)	526
BsiHKAI	GWGCWC	1 cut(s)	65
BsiSI	CCGG	3 cut(s)	194, 641, 653
BslFI	GGGAC	1 cut(s)	224
BsmFI	GGGAC	1 cut(s)	224
BsmI	GAATGC	1 cut(s)	623
BsnI	GGCC	2 cut(s)	305, 640
Bsp1286I	GDGCHC	2 cut(s)	65, 108
Bsp143I	GATC	2 cut(s)	28, 457
BspANI	GGCC	2 cut(s)	305, 640
BspCNI	CTCAG	1 cut(s)	151
BspLI	GGNNCC	1 cut(s)	528
BspT107I	GGYRCC	1 cut(s)	526
BsrFI	RCCGGY	1 cut(s)	193
BsrI	ACTGG	1 cut(s)	574
BssAI	RCCGGY	1 cut(s)	193
BssMI	GATC	2 cut(s)	28, 457
BssNI	GRCGYC	1 cut(s)	527
Bst2UI	CCWGG	3 cut(s)	317, 524, 592
Bst4CI	ACNGT	2 cut(s)	77, 150
BstACI	GRCGYC	1 cut(s)	527
BstDEI	CTNAG	1 cut(s)	159
BstF5I	GGATG	3 cut(s)	211, 271, 661
BstH2I	RGCGCY	1 cut(s)	530
BstHHI	GCGC	1 cut(s)	529
BstKTI	GATC	2 cut(s)	31, 460
BstMBI	GATC	2 cut(s)	28, 457
BstMWI	GCNNNNNNNGC	1 cut(s)	646
BstNI	CCWGG	3 cut(s)	317, 524, 592
BstSCI	CCNGG	3 cut(s)	315, 522, 590
BstV1I	GCAGC	3 cut(s)	307, 458, 661
BstV2I	GAAGAC	1 cut(s)	294
BstX2I	RGATCY	1 cut(s)	457
BstYI	RGATCY	1 cut(s)	457
BsuRI	GGCC	2 cut(s)	305, 640
BtsCI	GGATG	3 cut(s)	211, 271, 661
CfoI	GCGC	1 cut(s)	529
Cfr10I	RCCGGY	1 cut(s)	193
Csp6I	GTAC	4 cut(s)	118, 197, 262, 368
CviAII	CATG	3 cut(s)	58, 568, 599
CviQI	GTAC	4 cut(s)	118, 197, 262, 368
DdeI	CTNAG	1 cut(s)	159
DinI	GGCGCC	1 cut(s)	528
DpnI	GATC	2 cut(s)	30, 459
DpnII	GATC	2 cut(s)	28, 457
Ecl136II	GAGCTC	1 cut(s)	63
Eco24I	GRGCYC	2 cut(s)	65, 108
Eco53kI	GAGCTC	1 cut(s)	63
Eco57I	CTGAAG	2 cut(s)	278, 306
EcoICRI	GAGCTC	1 cut(s)	63
EcoRII	CCWGG	3 cut(s)	315, 522, 590
EcoT22I	ATGCAT	1 cut(s)	544
EcoT38I	GRGCYC	2 cut(s)	65, 108
EgeI	GGCGCC	1 cut(s)	528
EheI	GGCGCC	1 cut(s)	528
FaeI	CATG	3 cut(s)	61, 571, 602
FaqI	GGGAC	1 cut(s)	224
FatI	CATG	3 cut(s)	57, 567, 598
Fnu4HI	GCNGC	3 cut(s)	321, 447, 650
FokI	GGATG	2 cut(s)	218, 258
FriOI	GRGCYC	2 cut(s)	65, 108
Fsp4HI	GCNGC	3 cut(s)	321, 447, 650
FspBI	CTAG	2 cut(s)	563, 636
GlaI	GCGC	1 cut(s)	528
GluI	GCNGC	3 cut(s)	321, 447, 650
HaeII	RGCGCY	1 cut(s)	530
HaeIII	GGCC	2 cut(s)	305, 640
HapII	CCGG	3 cut(s)	194, 641, 653
HhaI	GCGC	1 cut(s)	529
Hin1I	GRCGYC	1 cut(s)	527
Hin1II	CATG	3 cut(s)	61, 571, 602
Hin6I	GCGC	1 cut(s)	527
HinP1I	GCGC	1 cut(s)	527
HinfI	GANTC	3 cut(s)	175, 227, 358
HpaII	CCGG	3 cut(s)	194, 641, 653
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	3 cut(s)	83, 226, 357
Hpy188III	TCNNGA	3 cut(s)	158, 398, 563
Hpy8I	GTNNAC	1 cut(s)	130
HpyAV	CCTTC	3 cut(s)	133, 302, 362
HpyCH4III	ACNGT	2 cut(s)	77, 150
HpyCH4V	TGCA	9 cut(s)	89, 323, 404, 446, 476, 488, 512, 542, 598
HpyF10VI	GCNNNNNNNGC	1 cut(s)	646
HpyF3I	CTNAG	1 cut(s)	159
Hsp92I	GRCGYC	1 cut(s)	527
Hsp92II	CATG	3 cut(s)	61, 571, 602
HspAI	GCGC	1 cut(s)	527
KasI	GGCGCC	1 cut(s)	526
Kzo9I	GATC	2 cut(s)	28, 457
Lsp1109I	GCAGC	3 cut(s)	307, 458, 661
LweI	GCATC	5 cut(s)	391, 529, 551, 622, 646
MaeI	CTAG	2 cut(s)	563, 636
MaeIII	GTNAC	1 cut(s)	14
MalI	GATC	2 cut(s)	30, 459
MboI	GATC	2 cut(s)	28, 457
MboII	GAAGA	5 cut(s)	266, 299, 395, 467, 492
MfeI	CAATTG	1 cut(s)	489
MflI	RGATCY	1 cut(s)	457
MhlI	GDGCHC	2 cut(s)	65, 108
MluCI	AATT	5 cut(s)	41, 84, 373, 408, 489
Mly113I	GGCGCC	1 cut(s)	527
MnlI	CCTC	2 cut(s)	107, 595
Mph1103I	ATGCAT	1 cut(s)	544
MroXI	GAANNNNTTC	1 cut(s)	291
MseI	TTAA	1 cut(s)	309
MspI	CCGG	3 cut(s)	194, 641, 653
MspR9I	CCNGG	3 cut(s)	317, 524, 592
MunI	CAATTG	1 cut(s)	489
Mva1269I	GAATGC	1 cut(s)	623
MvaI	CCWGG	3 cut(s)	317, 524, 592
MwoI	GCNNNNNNNGC	1 cut(s)	646
NarI	GGCGCC	1 cut(s)	527
NdeII	GATC	2 cut(s)	28, 457
NlaIII	CATG	3 cut(s)	61, 571, 602
NlaIV	GGNNCC	1 cut(s)	528
NmuCI	GTSAC	1 cut(s)	14
NsiI	ATGCAT	1 cut(s)	544
PcsI	WCGNNNNNNNCGW	1 cut(s)	24
PctI	GAATGC	1 cut(s)	623
PdmI	GAANNNNTTC	1 cut(s)	291
PfeI	GAWTC	3 cut(s)	175, 227, 358
PkrI	GCNGC	3 cut(s)	322, 448, 651
PluTI	GGCGCC	1 cut(s)	530
Psp124BI	GAGCTC	1 cut(s)	65
Psp6I	CCWGG	3 cut(s)	315, 522, 590
PspGI	CCWGG	3 cut(s)	315, 522, 590
PspN4I	GGNNCC	1 cut(s)	528
PsuI	RGATCY	1 cut(s)	457
RsaI	GTAC	4 cut(s)	119, 198, 263, 369
RsaNI	GTAC	4 cut(s)	118, 197, 262, 368
SacI	GAGCTC	1 cut(s)	65
SaqAI	TTAA	1 cut(s)	309
SatI	GCNGC	3 cut(s)	321, 447, 650
Sau3AI	GATC	2 cut(s)	28, 457
ScaI	AGTACT	1 cut(s)	369
ScrFI	CCNGG	3 cut(s)	317, 524, 592
SduI	GDGCHC	2 cut(s)	65, 108
SetI	ASST	9 cut(s)	65, 99, 127, 174, 220, 294, 442, 557, 596
SfaNI	GCATC	5 cut(s)	391, 529, 551, 622, 646
SfoI	GGCGCC	1 cut(s)	528
SmlI	CTYRAG	1 cut(s)	337
SmoI	CTYRAG	1 cut(s)	337
Sse9I	AATT	5 cut(s)	41, 84, 373, 408, 489
SspDI	GGCGCC	1 cut(s)	526
SspI	AATATT	1 cut(s)	328
SspMI	CTAG	2 cut(s)	563, 636
SstI	GAGCTC	1 cut(s)	65
StyD4I	CCNGG	3 cut(s)	315, 522, 590
TaaI	ACNGT	2 cut(s)	77, 150
TasI	AATT	5 cut(s)	41, 84, 373, 408, 489
TatI	WGTACW	2 cut(s)	117, 367
TfiI	GAWTC	3 cut(s)	175, 227, 358
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TseFI	GTSAC	1 cut(s)	14
TseI	GCWGC	3 cut(s)	320, 446, 649
Tsp45I	GTSAC	1 cut(s)	14
TspDTI	ATGAA	5 cut(s)	219, 416, 513, 616, 654
TspGWI	ACGGA	1 cut(s)	264
XbaI	TCTAGA	1 cut(s)	562
XmnI	GAANNNNTTC	1 cut(s)	291
XspI	CTAG	2 cut(s)	563, 636
ZrmI	AGTACT	1 cut(s)	369
Zsp2I	ATGCAT	1 cut(s)	544

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.